data_4DSU # _model_server_result.job_id ylyZirlvL-iTS6RkwJdsTg _model_server_result.datetime_utc '2024-11-27 20:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dsu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4DSU # _exptl.entry_id 4DSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.136 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DSU _cell.length_a 79.553 _cell.length_b 79.553 _cell.length_c 78.055 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 B O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 C MG MG . A MG 202 1_555 E O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 C MG MG . A MG 202 1_555 E O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C7 H6 N2' _chem_comp.formula_weight 118.136 _chem_comp.id BZI _chem_comp.mon_nstd_flag . _chem_comp.name BENZIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 BZI sing 70 n y N1 C7A BZI sing 71 n y N1 HN1 BZI sing 72 n n C2 N3 BZI doub 73 n y C2 H2 BZI sing 74 n n N3 C3A BZI sing 75 n y C3A C4 BZI doub 76 n y C3A C7A BZI sing 77 n y C4 C5 BZI sing 78 n y C4 H4 BZI sing 79 n n C5 C6 BZI doub 80 n y C5 H5 BZI sing 81 n n C6 C7 BZI sing 82 n y C6 H6 BZI sing 83 n n C7 C7A BZI doub 84 n y C7 H7 BZI sing 85 n n # _atom_sites.entry_id 4DSU _atom_sites.fract_transf_matrix[1][1] 0.01257 _atom_sites.fract_transf_matrix[1][2] 0.007257 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 1 GDP GDP . C 3 MG A 1 202 1 MG MG . D 4 BZI A 1 203 1 BZI BZI . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 18 HOH HOH . E 5 HOH A 18 318 19 HOH HOH . E 5 HOH A 19 319 20 HOH HOH . E 5 HOH A 20 320 21 HOH HOH . E 5 HOH A 21 321 22 HOH HOH . E 5 HOH A 22 322 24 HOH HOH . E 5 HOH A 23 323 25 HOH HOH . E 5 HOH A 24 324 26 HOH HOH . E 5 HOH A 25 325 28 HOH HOH . E 5 HOH A 26 326 29 HOH HOH . E 5 HOH A 27 327 30 HOH HOH . E 5 HOH A 28 328 31 HOH HOH . E 5 HOH A 29 329 32 HOH HOH . E 5 HOH A 30 330 33 HOH HOH . E 5 HOH A 31 331 34 HOH HOH . E 5 HOH A 32 332 35 HOH HOH . E 5 HOH A 33 333 36 HOH HOH . E 5 HOH A 34 334 37 HOH HOH . E 5 HOH A 35 335 38 HOH HOH . E 5 HOH A 36 336 39 HOH HOH . E 5 HOH A 37 337 40 HOH HOH . E 5 HOH A 38 338 41 HOH HOH . E 5 HOH A 39 339 42 HOH HOH . E 5 HOH A 40 340 43 HOH HOH . E 5 HOH A 41 341 44 HOH HOH . E 5 HOH A 42 342 45 HOH HOH . E 5 HOH A 43 343 46 HOH HOH . E 5 HOH A 44 344 47 HOH HOH . E 5 HOH A 45 345 48 HOH HOH . E 5 HOH A 46 346 49 HOH HOH . E 5 HOH A 47 347 50 HOH HOH . E 5 HOH A 48 348 51 HOH HOH . E 5 HOH A 49 349 52 HOH HOH . E 5 HOH A 50 350 53 HOH HOH . E 5 HOH A 51 351 54 HOH HOH . E 5 HOH A 52 352 55 HOH HOH . E 5 HOH A 53 353 56 HOH HOH . E 5 HOH A 54 354 57 HOH HOH . E 5 HOH A 55 355 58 HOH HOH . E 5 HOH A 56 356 59 HOH HOH . E 5 HOH A 57 357 60 HOH HOH . E 5 HOH A 58 358 61 HOH HOH . E 5 HOH A 59 359 62 HOH HOH . E 5 HOH A 60 360 63 HOH HOH . E 5 HOH A 61 361 64 HOH HOH . E 5 HOH A 62 362 65 HOH HOH . E 5 HOH A 63 363 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BZI . . . D 4 25.358 12.533 11.401 1 48.77 ? N1 BZI 203 A 1 HETATM 2 C C2 BZI . . . D 4 25.126 12.51 12.681 1 49.75 ? C2 BZI 203 A 1 HETATM 3 N N3 BZI . . . D 4 23.962 13.16 12.955 1 47.09 ? N3 BZI 203 A 1 HETATM 4 C C3A BZI . . . D 4 23.447 13.613 11.75 1 45.02 ? C3A BZI 203 A 1 HETATM 5 C C4 BZI . . . D 4 22.312 14.325 11.389 1 42.56 ? C4 BZI 203 A 1 HETATM 6 C C5 BZI . . . D 4 22.087 14.623 10.061 1 40.36 ? C5 BZI 203 A 1 HETATM 7 C C6 BZI . . . D 4 22.986 14.213 9.086 1 41.38 ? C6 BZI 203 A 1 HETATM 8 C C7 BZI . . . D 4 24.113 13.513 9.422 1 41.69 ? C7 BZI 203 A 1 HETATM 9 C C7A BZI . . . D 4 24.358 13.2 10.762 1 44.87 ? C7A BZI 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 9 #