data_4DT6
#
_model_server_result.job_id            VhMg0oJHTjLK2XHrPZTiow 
_model_server_result.datetime_utc      '2024-10-19 10:32:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dt6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    4DT6 
#
_exptl.entry_id    4DT6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              518.822 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7-[2-(4-chlorophenoxy)ethyl]guanosine 5'-(dihydrogen phosphate)" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DT6 
_cell.length_a            38.224 
_cell.length_b            61.073 
_cell.length_c            122.439 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DT6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H22 Cl N5 O9 P 1' 
_chem_comp.formula_weight    518.822 
_chem_comp.id                6LI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7-[2-(4-chlorophenoxy)ethyl]guanosine 5'-(dihydrogen phosphate)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 6LI sing 1 n n 
C1 O1 6LI sing 2 n n 
C1 C4 6LI sing 3 n n 
N1 C7 6LI sing 4 n y 
N1 C8 6LI sing 5 n y 
O1 C2 6LI sing 6 n n 
P1 O4 6LI sing 7 n n 
P1 O7 6LI doub 8 n n 
P1 O8 6LI sing 9 n n 
P1 O9 6LI sing 10 n n 
CL1 C16 6LI sing 11 n n 
C2 C3 6LI sing 12 n n 
C2 C5 6LI sing 13 n n 
N2 C6 6LI sing 14 n y 
N2 C8 6LI doub 15 n y 
N2 C11 6LI sing 16 n n 
O2 C4 6LI sing 17 n n 
C3 O3 6LI sing 18 n n 
C3 C4 6LI sing 19 n n 
N3 C9 6LI sing 20 n n 
N3 C10 6LI sing 21 n n 
N4 C7 6LI sing 22 n n 
N4 C9 6LI doub 23 n n 
O4 C5 6LI sing 24 n n 
N5 C9 6LI sing 25 n n 
O5 C10 6LI doub 26 n n 
C6 C7 6LI doub 27 n y 
C6 C10 6LI sing 28 n n 
O6 C12 6LI sing 29 n n 
O6 C13 6LI sing 30 n n 
C11 C12 6LI sing 31 n n 
C13 C14 6LI doub 32 n y 
C13 C18 6LI sing 33 n y 
C14 C15 6LI sing 34 n y 
C15 C16 6LI doub 35 n y 
C16 C17 6LI sing 36 n y 
C17 C18 6LI doub 37 n y 
C1 H1 6LI sing 38 n n 
C2 H2 6LI sing 39 n n 
O2 HO2 6LI sing 40 n n 
C3 H3 6LI sing 41 n n 
N3 HN3 6LI sing 42 n n 
O3 HO3 6LI sing 43 n n 
C4 H4 6LI sing 44 n n 
C5 H5 6LI sing 45 n n 
C5 H5A 6LI sing 46 n n 
N5 HN5 6LI sing 47 n n 
N5 HN5A 6LI sing 48 n n 
C8 H8 6LI sing 49 n n 
C11 H11 6LI sing 50 n n 
C11 H11A 6LI sing 51 n n 
C12 H12 6LI sing 52 n n 
C12 H12A 6LI sing 53 n n 
C14 H14 6LI sing 54 n n 
C15 H15 6LI sing 55 n n 
C17 H17 6LI sing 56 n n 
C18 H18 6LI sing 57 n n 
O8 HO8 6LI sing 58 n n 
O9 HO9 6LI sing 59 n n 
#
_atom_sites.entry_id                     4DT6 
_atom_sites.fract_transf_matrix[1][1]    0.026162 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016374 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6LI A 1 1001 1001 6LI 6LI . 
C 3 GOL A 1 1002 1101 GOL GOL . 
D 4 EDO A 1 1003 1102 EDO EDO . 
E 4 EDO A 1 1004 1103 EDO EDO . 
F 4 EDO A 1 1005 1104 EDO EDO . 
G 4 EDO A 1 1006 1105 EDO EDO . 
H 5 HOH A 1 1101 1 HOH HOH . 
H 5 HOH A 2 1102 2 HOH HOH . 
H 5 HOH A 3 1103 3 HOH HOH . 
H 5 HOH A 4 1104 4 HOH HOH . 
H 5 HOH A 5 1105 5 HOH HOH . 
H 5 HOH A 6 1106 6 HOH HOH . 
H 5 HOH A 7 1107 7 HOH HOH . 
H 5 HOH A 8 1108 8 HOH HOH . 
H 5 HOH A 9 1109 9 HOH HOH . 
H 5 HOH A 10 1110 10 HOH HOH . 
H 5 HOH A 11 1111 11 HOH HOH . 
H 5 HOH A 12 1112 12 HOH HOH . 
H 5 HOH A 13 1113 13 HOH HOH . 
H 5 HOH A 14 1114 14 HOH HOH . 
H 5 HOH A 15 1115 15 HOH HOH . 
H 5 HOH A 16 1116 16 HOH HOH . 
H 5 HOH A 17 1117 17 HOH HOH . 
H 5 HOH A 18 1118 18 HOH HOH . 
H 5 HOH A 19 1119 19 HOH HOH . 
H 5 HOH A 20 1120 20 HOH HOH . 
H 5 HOH A 21 1121 21 HOH HOH . 
H 5 HOH A 22 1122 22 HOH HOH . 
H 5 HOH A 23 1123 23 HOH HOH . 
H 5 HOH A 24 1124 24 HOH HOH . 
H 5 HOH A 25 1125 25 HOH HOH . 
H 5 HOH A 26 1126 26 HOH HOH . 
H 5 HOH A 27 1127 27 HOH HOH . 
H 5 HOH A 28 1128 28 HOH HOH . 
H 5 HOH A 29 1129 29 HOH HOH . 
H 5 HOH A 30 1130 30 HOH HOH . 
H 5 HOH A 31 1131 31 HOH HOH . 
H 5 HOH A 32 1132 32 HOH HOH . 
H 5 HOH A 33 1133 33 HOH HOH . 
H 5 HOH A 34 1134 34 HOH HOH . 
H 5 HOH A 35 1135 35 HOH HOH . 
H 5 HOH A 36 1136 36 HOH HOH . 
H 5 HOH A 37 1137 37 HOH HOH . 
H 5 HOH A 38 1138 38 HOH HOH . 
H 5 HOH A 39 1139 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 6LI . . . B 2 2.232 -0.733 -24.582 1 15.88 ? C1 6LI 1001 A 1 
HETATM 2 N N1 6LI . . . B 2 1.254 0.413 -24.498 1 12.34 ? N1 6LI 1001 A 1 
HETATM 3 O O1 6LI . . . B 2 3.482 -0.384 -23.886 1 19.68 ? O1 6LI 1001 A 1 
HETATM 4 P P1 6LI . . . B 2 5.869 3.029 -23.954 1 27.16 ? P1 6LI 1001 A 1 
HETATM 5 CL CL1 6LI . . . B 2 0.333 4.903 -15.923 1 15.27 ? CL1 6LI 1001 A 1 
HETATM 6 C C2 6LI . . . B 2 4.569 -0.529 -24.849 1 19.49 ? C2 6LI 1001 A 1 
HETATM 7 N N2 6LI . . . B 2 0.4 2.372 -24.194 1 8.46 ? N2 6LI 1001 A 1 
HETATM 8 O O2 6LI . . . B 2 2.999 -2.321 -26.269 1 17.99 ? O2 6LI 1001 A 1 
HETATM 9 C C3 6LI . . . B 2 3.868 -0.084 -26.139 1 18.4 ? C3 6LI 1001 A 1 
HETATM 10 N N3 6LI . . . B 2 -2.732 0.682 -25.293 1 8.37 ? N3 6LI 1001 A 1 
HETATM 11 O O3 6LI . . . B 2 4.672 -0.44 -27.275 1 18.97 ? O3 6LI 1001 A 1 
HETATM 12 C C4 6LI . . . B 2 2.635 -0.944 -26.05 1 16.34 ? C4 6LI 1001 A 1 
HETATM 13 N N4 6LI . . . B 2 -0.764 -0.737 -25.212 1 11.09 ? N4 6LI 1001 A 1 
HETATM 14 O O4 6LI . . . B 2 5.063 1.655 -24.267 1 23.73 ? O4 6LI 1001 A 1 
HETATM 15 C C5 6LI . . . B 2 5.683 0.421 -24.46 1 20.02 ? C5 6LI 1001 A 1 
HETATM 16 N N5 6LI . . . B 2 -2.817 -1.611 -25.879 1 14.48 ? N5 6LI 1001 A 1 
HETATM 17 O O5 6LI . . . B 2 -2.436 2.884 -24.691 1 10.26 ? O5 6LI 1001 A 1 
HETATM 18 C C6 6LI . . . B 2 -0.578 1.578 -24.633 1 9.35 ? C6 6LI 1001 A 1 
HETATM 19 O O6 6LI . . . B 2 0.974 4.033 -21.667 1 9.35 ? O6 6LI 1001 A 1 
HETATM 20 C C7 6LI . . . B 2 -0.028 0.315 -24.806 1 9.97 ? C7 6LI 1001 A 1 
HETATM 21 O O7 6LI . . . B 2 7.222 2.936 -24.622 1 24.87 ? O7 6LI 1001 A 1 
HETATM 22 C C8 6LI . . . B 2 1.528 1.675 -24.135 1 9.03 ? C8 6LI 1001 A 1 
HETATM 23 O O8 6LI . . . B 2 5.797 3.209 -22.335 1 25.04 ? O8 6LI 1001 A 1 
HETATM 24 C C9 6LI . . . B 2 -2.093 -0.57 -25.462 1 13.49 ? C9 6LI 1001 A 1 
HETATM 25 O O9 6LI . . . B 2 4.88 4.229 -24.481 1 21.38 ? O9 6LI 1001 A 1 
HETATM 26 C C10 6LI . . . B 2 -1.941 1.769 -24.867 1 10.49 ? C10 6LI 1001 A 1 
HETATM 27 C C11 6LI . . . B 2 0.307 3.831 -23.917 1 7.48 ? C11 6LI 1001 A 1 
HETATM 28 C C12 6LI . . . B 2 -0.171 4.17 -22.524 1 10.12 ? C12 6LI 1001 A 1 
HETATM 29 C C13 6LI . . . B 2 0.748 4.266 -20.332 1 11.81 ? C13 6LI 1001 A 1 
HETATM 30 C C14 6LI . . . B 2 -0.453 4.786 -19.836 1 11.23 ? C14 6LI 1001 A 1 
HETATM 31 C C15 6LI . . . B 2 -0.6 4.983 -18.472 1 10.56 ? C15 6LI 1001 A 1 
HETATM 32 C C16 6LI . . . B 2 0.451 4.649 -17.623 1 12.24 ? C16 6LI 1001 A 1 
HETATM 33 C C17 6LI . . . B 2 1.637 4.159 -18.104 1 10.68 ? C17 6LI 1001 A 1 
HETATM 34 C C18 6LI . . . B 2 1.78 3.961 -19.451 1 11.62 ? C18 6LI 1001 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#