data_4DT8
#
_model_server_result.job_id            1xXzgVVlWBXdpAzSsQGG0A 
_model_server_result.datetime_utc      '2024-11-23 21:28:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dt8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4DT8 
#
_exptl.entry_id    4DT8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.56 
_cell.angle_gamma         90 
_cell.entry_id            4DT8 
_cell.length_a            42.664 
_cell.length_b            101.403 
_cell.length_c            73.588 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DT8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     4DT8 
_atom_sites.fract_transf_matrix[1][1]    0.023439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004371 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013823 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADN A 1 401 1 ADN ADN . 
D 3 CL A 1 402 198 CL CL . 
E 2 ADN B 1 401 1 ADN ADN . 
F 3 CL B 1 402 199 CL CL . 
G 4 HOH A 1 501 1 HOH HOH . 
G 4 HOH A 2 502 6 HOH HOH . 
G 4 HOH A 3 503 7 HOH HOH . 
G 4 HOH A 4 504 8 HOH HOH . 
G 4 HOH A 5 505 9 HOH HOH . 
G 4 HOH A 6 506 10 HOH HOH . 
G 4 HOH A 7 507 11 HOH HOH . 
G 4 HOH A 8 508 12 HOH HOH . 
G 4 HOH A 9 509 15 HOH HOH . 
G 4 HOH A 10 510 17 HOH HOH . 
G 4 HOH A 11 511 18 HOH HOH . 
G 4 HOH A 12 512 19 HOH HOH . 
G 4 HOH A 13 513 20 HOH HOH . 
G 4 HOH A 14 514 21 HOH HOH . 
G 4 HOH A 15 515 25 HOH HOH . 
G 4 HOH A 16 516 26 HOH HOH . 
G 4 HOH A 17 517 28 HOH HOH . 
G 4 HOH A 18 518 29 HOH HOH . 
G 4 HOH A 19 519 35 HOH HOH . 
G 4 HOH A 20 520 36 HOH HOH . 
G 4 HOH A 21 521 37 HOH HOH . 
G 4 HOH A 22 522 38 HOH HOH . 
G 4 HOH A 23 523 39 HOH HOH . 
G 4 HOH A 24 524 46 HOH HOH . 
G 4 HOH A 25 525 48 HOH HOH . 
G 4 HOH A 26 526 50 HOH HOH . 
G 4 HOH A 27 527 51 HOH HOH . 
G 4 HOH A 28 528 52 HOH HOH . 
G 4 HOH A 29 529 53 HOH HOH . 
G 4 HOH A 30 530 54 HOH HOH . 
G 4 HOH A 31 531 55 HOH HOH . 
G 4 HOH A 32 532 58 HOH HOH . 
G 4 HOH A 33 533 59 HOH HOH . 
G 4 HOH A 34 534 61 HOH HOH . 
G 4 HOH A 35 535 62 HOH HOH . 
G 4 HOH A 36 536 63 HOH HOH . 
G 4 HOH A 37 537 64 HOH HOH . 
G 4 HOH A 38 538 65 HOH HOH . 
G 4 HOH A 39 539 66 HOH HOH . 
G 4 HOH A 40 540 67 HOH HOH . 
G 4 HOH A 41 541 68 HOH HOH . 
G 4 HOH A 42 542 69 HOH HOH . 
G 4 HOH A 43 543 70 HOH HOH . 
G 4 HOH A 44 544 71 HOH HOH . 
G 4 HOH A 45 545 72 HOH HOH . 
G 4 HOH A 46 546 75 HOH HOH . 
G 4 HOH A 47 547 76 HOH HOH . 
G 4 HOH A 48 548 78 HOH HOH . 
G 4 HOH A 49 549 79 HOH HOH . 
G 4 HOH A 50 550 81 HOH HOH . 
G 4 HOH A 51 551 82 HOH HOH . 
G 4 HOH A 52 552 83 HOH HOH . 
G 4 HOH A 53 553 84 HOH HOH . 
G 4 HOH A 54 554 85 HOH HOH . 
G 4 HOH A 55 555 86 HOH HOH . 
G 4 HOH A 56 556 87 HOH HOH . 
G 4 HOH A 57 557 88 HOH HOH . 
G 4 HOH A 58 558 89 HOH HOH . 
G 4 HOH A 59 559 90 HOH HOH . 
G 4 HOH A 60 560 91 HOH HOH . 
G 4 HOH A 61 561 92 HOH HOH . 
G 4 HOH A 62 562 93 HOH HOH . 
G 4 HOH A 63 563 94 HOH HOH . 
G 4 HOH A 64 564 95 HOH HOH . 
G 4 HOH A 65 565 96 HOH HOH . 
G 4 HOH A 66 566 97 HOH HOH . 
G 4 HOH A 67 567 98 HOH HOH . 
G 4 HOH A 68 568 99 HOH HOH . 
G 4 HOH A 69 569 100 HOH HOH . 
G 4 HOH A 70 570 126 HOH HOH . 
G 4 HOH A 71 571 127 HOH HOH . 
G 4 HOH A 72 572 128 HOH HOH . 
G 4 HOH A 73 573 129 HOH HOH . 
G 4 HOH A 74 574 130 HOH HOH . 
G 4 HOH A 75 575 134 HOH HOH . 
G 4 HOH A 76 576 135 HOH HOH . 
G 4 HOH A 77 577 140 HOH HOH . 
G 4 HOH A 78 578 147 HOH HOH . 
G 4 HOH A 79 579 148 HOH HOH . 
G 4 HOH A 80 580 149 HOH HOH . 
G 4 HOH A 81 581 150 HOH HOH . 
G 4 HOH A 82 582 151 HOH HOH . 
G 4 HOH A 83 583 152 HOH HOH . 
G 4 HOH A 84 584 153 HOH HOH . 
G 4 HOH A 85 585 154 HOH HOH . 
G 4 HOH A 86 586 155 HOH HOH . 
G 4 HOH A 87 587 162 HOH HOH . 
G 4 HOH A 88 588 165 HOH HOH . 
G 4 HOH A 89 589 166 HOH HOH . 
G 4 HOH A 90 590 167 HOH HOH . 
G 4 HOH A 91 591 168 HOH HOH . 
G 4 HOH A 92 592 172 HOH HOH . 
G 4 HOH A 93 593 173 HOH HOH . 
G 4 HOH A 94 594 175 HOH HOH . 
G 4 HOH A 95 595 179 HOH HOH . 
G 4 HOH A 96 596 180 HOH HOH . 
G 4 HOH A 97 597 181 HOH HOH . 
G 4 HOH A 98 598 192 HOH HOH . 
G 4 HOH A 99 599 193 HOH HOH . 
G 4 HOH A 100 600 195 HOH HOH . 
H 4 HOH B 1 501 2 HOH HOH . 
H 4 HOH B 2 502 3 HOH HOH . 
H 4 HOH B 3 503 4 HOH HOH . 
H 4 HOH B 4 504 5 HOH HOH . 
H 4 HOH B 5 505 13 HOH HOH . 
H 4 HOH B 6 506 14 HOH HOH . 
H 4 HOH B 7 507 16 HOH HOH . 
H 4 HOH B 8 508 22 HOH HOH . 
H 4 HOH B 9 509 23 HOH HOH . 
H 4 HOH B 10 510 24 HOH HOH . 
H 4 HOH B 11 511 27 HOH HOH . 
H 4 HOH B 12 512 30 HOH HOH . 
H 4 HOH B 13 513 31 HOH HOH . 
H 4 HOH B 14 514 32 HOH HOH . 
H 4 HOH B 15 515 33 HOH HOH . 
H 4 HOH B 16 516 34 HOH HOH . 
H 4 HOH B 17 517 40 HOH HOH . 
H 4 HOH B 18 518 41 HOH HOH . 
H 4 HOH B 19 519 42 HOH HOH . 
H 4 HOH B 20 520 43 HOH HOH . 
H 4 HOH B 21 521 44 HOH HOH . 
H 4 HOH B 22 522 45 HOH HOH . 
H 4 HOH B 23 523 47 HOH HOH . 
H 4 HOH B 24 524 49 HOH HOH . 
H 4 HOH B 25 525 56 HOH HOH . 
H 4 HOH B 26 526 57 HOH HOH . 
H 4 HOH B 27 527 60 HOH HOH . 
H 4 HOH B 28 528 73 HOH HOH . 
H 4 HOH B 29 529 74 HOH HOH . 
H 4 HOH B 30 530 77 HOH HOH . 
H 4 HOH B 31 531 80 HOH HOH . 
H 4 HOH B 32 532 101 HOH HOH . 
H 4 HOH B 33 533 102 HOH HOH . 
H 4 HOH B 34 534 103 HOH HOH . 
H 4 HOH B 35 535 104 HOH HOH . 
H 4 HOH B 36 536 105 HOH HOH . 
H 4 HOH B 37 537 106 HOH HOH . 
H 4 HOH B 38 538 107 HOH HOH . 
H 4 HOH B 39 539 108 HOH HOH . 
H 4 HOH B 40 540 109 HOH HOH . 
H 4 HOH B 41 541 110 HOH HOH . 
H 4 HOH B 42 542 111 HOH HOH . 
H 4 HOH B 43 543 112 HOH HOH . 
H 4 HOH B 44 544 113 HOH HOH . 
H 4 HOH B 45 545 114 HOH HOH . 
H 4 HOH B 46 546 115 HOH HOH . 
H 4 HOH B 47 547 116 HOH HOH . 
H 4 HOH B 48 548 117 HOH HOH . 
H 4 HOH B 49 549 118 HOH HOH . 
H 4 HOH B 50 550 119 HOH HOH . 
H 4 HOH B 51 551 120 HOH HOH . 
H 4 HOH B 52 552 121 HOH HOH . 
H 4 HOH B 53 553 122 HOH HOH . 
H 4 HOH B 54 554 123 HOH HOH . 
H 4 HOH B 55 555 124 HOH HOH . 
H 4 HOH B 56 556 125 HOH HOH . 
H 4 HOH B 57 557 131 HOH HOH . 
H 4 HOH B 58 558 132 HOH HOH . 
H 4 HOH B 59 559 133 HOH HOH . 
H 4 HOH B 60 560 136 HOH HOH . 
H 4 HOH B 61 561 137 HOH HOH . 
H 4 HOH B 62 562 138 HOH HOH . 
H 4 HOH B 63 563 139 HOH HOH . 
H 4 HOH B 64 564 141 HOH HOH . 
H 4 HOH B 65 565 142 HOH HOH . 
H 4 HOH B 66 566 143 HOH HOH . 
H 4 HOH B 67 567 144 HOH HOH . 
H 4 HOH B 68 568 145 HOH HOH . 
H 4 HOH B 69 569 146 HOH HOH . 
H 4 HOH B 70 570 156 HOH HOH . 
H 4 HOH B 71 571 157 HOH HOH . 
H 4 HOH B 72 572 158 HOH HOH . 
H 4 HOH B 73 573 159 HOH HOH . 
H 4 HOH B 74 574 160 HOH HOH . 
H 4 HOH B 75 575 161 HOH HOH . 
H 4 HOH B 76 576 163 HOH HOH . 
H 4 HOH B 77 577 164 HOH HOH . 
H 4 HOH B 78 578 169 HOH HOH . 
H 4 HOH B 79 579 170 HOH HOH . 
H 4 HOH B 80 580 171 HOH HOH . 
H 4 HOH B 81 581 174 HOH HOH . 
H 4 HOH B 82 582 176 HOH HOH . 
H 4 HOH B 83 583 177 HOH HOH . 
H 4 HOH B 84 584 178 HOH HOH . 
H 4 HOH B 85 585 182 HOH HOH . 
H 4 HOH B 86 586 183 HOH HOH . 
H 4 HOH B 87 587 184 HOH HOH . 
H 4 HOH B 88 588 185 HOH HOH . 
H 4 HOH B 89 589 186 HOH HOH . 
H 4 HOH B 90 590 187 HOH HOH . 
H 4 HOH B 91 591 188 HOH HOH . 
H 4 HOH B 92 592 189 HOH HOH . 
H 4 HOH B 93 593 190 HOH HOH . 
H 4 HOH B 94 594 191 HOH HOH . 
H 4 HOH B 95 595 194 HOH HOH . 
H 4 HOH B 96 596 196 HOH HOH . 
H 4 HOH B 97 597 197 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . C 2 5.394 -10.834 32.623 1 37.96 ? O5' ADN 401 A 1 
HETATM 2 C C5' ADN . . . C 2 6.312 -10.874 33.768 1 41.89 ? C5' ADN 401 A 1 
HETATM 3 C C4' ADN . . . C 2 6.231 -9.588 34.664 1 41.28 ? C4' ADN 401 A 1 
HETATM 4 O O4' ADN . . . C 2 6.681 -8.231 34.116 1 45.86 ? O4' ADN 401 A 1 
HETATM 5 C C3' ADN . . . C 2 4.725 -9.258 35.132 1 39.17 ? C3' ADN 401 A 1 
HETATM 6 O O3' ADN . . . C 2 4.128 -10.135 36.148 1 34.36 ? O3' ADN 401 A 1 
HETATM 7 C C2' ADN . . . C 2 4.812 -7.766 35.633 1 42.13 ? C2' ADN 401 A 1 
HETATM 8 O O2' ADN . . . C 2 5.687 -7.681 36.775 1 46.96 ? O2' ADN 401 A 1 
HETATM 9 C C1' ADN . . . C 2 5.514 -7.184 34.484 1 37.75 ? C1' ADN 401 A 1 
HETATM 10 N N9 ADN . . . C 2 4.603 -6.857 33.269 1 37.07 ? N9 ADN 401 A 1 
HETATM 11 C C8 ADN . . . C 2 4.412 -7.657 32.207 1 35.77 ? C8 ADN 401 A 1 
HETATM 12 N N7 ADN . . . C 2 3.618 -7.04 31.332 1 36.8 ? N7 ADN 401 A 1 
HETATM 13 C C5 ADN . . . C 2 3.327 -5.845 31.846 1 33.01 ? C5 ADN 401 A 1 
HETATM 14 C C6 ADN . . . C 2 2.568 -4.854 31.314 1 31.1 ? C6 ADN 401 A 1 
HETATM 15 N N6 ADN . . . C 2 2.028 -5.086 30.069 1 34.17 ? N6 ADN 401 A 1 
HETATM 16 N N1 ADN . . . C 2 2.415 -3.711 31.997 1 25.19 ? N1 ADN 401 A 1 
HETATM 17 C C2 ADN . . . C 2 2.999 -3.565 33.29 1 25.08 ? C2 ADN 401 A 1 
HETATM 18 N N3 ADN . . . C 2 3.815 -4.615 33.813 1 28.5 ? N3 ADN 401 A 1 
HETATM 19 C C4 ADN . . . C 2 3.933 -5.728 33.049 1 29.73 ? C4 ADN 401 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#