data_4DT9
#
_model_server_result.job_id            '_picorBV_mU-8fmHg-qu1w' 
_model_server_result.datetime_utc      '2024-11-05 05:08:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4DT9 
#
_exptl.entry_id    4DT9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GUANOSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100 
_cell.angle_gamma         90 
_cell.entry_id            4DT9 
_cell.length_a            42.252 
_cell.length_b            101.288 
_cell.length_c            73.389 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
A,B,C,D,E,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H13 N5 O5' 
_chem_comp.formula_weight    283.241 
_chem_comp.id                GMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GUANOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' GMP sing 129 n n 
O5' HO5' GMP sing 130 n n 
C5' C4' GMP sing 131 n n 
C5' "H5'1" GMP sing 132 n n 
C5' "H5'2" GMP sing 133 n n 
C4' O4' GMP sing 134 n n 
C4' C3' GMP sing 135 n n 
C4' H4' GMP sing 136 n n 
O4' C1' GMP sing 137 n n 
C3' O3' GMP sing 138 n n 
C3' C2' GMP sing 139 n n 
C3' H3' GMP sing 140 n n 
O3' HO3' GMP sing 141 n n 
C2' O2' GMP sing 142 n n 
C2' C1' GMP sing 143 n n 
C2' H2' GMP sing 144 n n 
O2' HO2' GMP sing 145 n n 
C1' N9 GMP sing 146 n n 
C1' H1' GMP sing 147 n n 
N9 C8 GMP sing 148 n y 
N9 C4 GMP sing 149 n y 
C8 N7 GMP doub 150 n y 
C8 H8 GMP sing 151 n n 
N7 C5 GMP sing 152 n y 
C5 C6 GMP sing 153 n n 
C5 C4 GMP doub 154 n y 
C6 O6 GMP doub 155 n n 
C6 N1 GMP sing 156 n n 
N1 C2 GMP sing 157 n n 
N1 HN1 GMP sing 158 n n 
C2 N2 GMP sing 159 n n 
C2 N3 GMP doub 160 n n 
N2 HN21 GMP sing 161 n n 
N2 HN22 GMP sing 162 n n 
N3 C4 GMP sing 163 n n 
#
_atom_sites.entry_id                     4DT9 
_atom_sites.fract_transf_matrix[1][1]    0.023668 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004172 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013836 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GMP A 1 401 1 GMP GNN . 
D 2 GMP B 1 401 1 GMP GNN . 
E 3 HOH A 1 501 4 HOH HOH . 
E 3 HOH A 2 502 5 HOH HOH . 
E 3 HOH A 3 503 6 HOH HOH . 
E 3 HOH A 4 504 7 HOH HOH . 
E 3 HOH A 5 505 8 HOH HOH . 
E 3 HOH A 6 506 28 HOH HOH . 
E 3 HOH A 7 507 29 HOH HOH . 
E 3 HOH A 8 508 31 HOH HOH . 
E 3 HOH A 9 509 33 HOH HOH . 
E 3 HOH A 10 510 36 HOH HOH . 
E 3 HOH A 11 511 37 HOH HOH . 
E 3 HOH A 12 512 38 HOH HOH . 
E 3 HOH A 13 513 39 HOH HOH . 
E 3 HOH A 14 514 40 HOH HOH . 
E 3 HOH A 15 515 46 HOH HOH . 
E 3 HOH A 16 516 53 HOH HOH . 
E 3 HOH A 17 517 57 HOH HOH . 
E 3 HOH A 18 518 58 HOH HOH . 
E 3 HOH A 19 519 59 HOH HOH . 
E 3 HOH A 20 520 61 HOH HOH . 
E 3 HOH A 21 521 62 HOH HOH . 
E 3 HOH A 22 522 66 HOH HOH . 
E 3 HOH A 23 523 67 HOH HOH . 
E 3 HOH A 24 524 68 HOH HOH . 
E 3 HOH A 25 525 72 HOH HOH . 
E 3 HOH A 26 526 77 HOH HOH . 
E 3 HOH A 27 527 78 HOH HOH . 
E 3 HOH A 28 528 79 HOH HOH . 
E 3 HOH A 29 529 80 HOH HOH . 
E 3 HOH A 30 530 81 HOH HOH . 
E 3 HOH A 31 531 82 HOH HOH . 
E 3 HOH A 32 532 83 HOH HOH . 
E 3 HOH A 33 533 84 HOH HOH . 
E 3 HOH A 34 534 85 HOH HOH . 
E 3 HOH A 35 535 86 HOH HOH . 
E 3 HOH A 36 536 87 HOH HOH . 
E 3 HOH A 37 537 89 HOH HOH . 
E 3 HOH A 38 538 90 HOH HOH . 
E 3 HOH A 39 539 91 HOH HOH . 
E 3 HOH A 40 540 92 HOH HOH . 
E 3 HOH A 41 541 93 HOH HOH . 
E 3 HOH A 42 542 96 HOH HOH . 
E 3 HOH A 43 543 97 HOH HOH . 
E 3 HOH A 44 544 98 HOH HOH . 
E 3 HOH A 45 545 99 HOH HOH . 
E 3 HOH A 46 546 100 HOH HOH . 
E 3 HOH A 47 547 101 HOH HOH . 
E 3 HOH A 48 548 102 HOH HOH . 
E 3 HOH A 49 549 103 HOH HOH . 
E 3 HOH A 50 550 105 HOH HOH . 
E 3 HOH A 51 551 106 HOH HOH . 
E 3 HOH A 52 552 107 HOH HOH . 
E 3 HOH A 53 553 108 HOH HOH . 
E 3 HOH A 54 554 109 HOH HOH . 
E 3 HOH A 55 555 110 HOH HOH . 
E 3 HOH A 56 556 111 HOH HOH . 
E 3 HOH A 57 557 112 HOH HOH . 
E 3 HOH A 58 558 113 HOH HOH . 
E 3 HOH A 59 559 114 HOH HOH . 
E 3 HOH A 60 560 115 HOH HOH . 
E 3 HOH A 61 561 116 HOH HOH . 
E 3 HOH A 62 562 117 HOH HOH . 
E 3 HOH A 63 563 118 HOH HOH . 
E 3 HOH A 64 564 165 HOH HOH . 
E 3 HOH A 65 565 166 HOH HOH . 
E 3 HOH A 66 566 167 HOH HOH . 
E 3 HOH A 67 567 171 HOH HOH . 
E 3 HOH A 68 568 172 HOH HOH . 
E 3 HOH A 69 569 176 HOH HOH . 
E 3 HOH A 70 570 177 HOH HOH . 
E 3 HOH A 71 571 178 HOH HOH . 
E 3 HOH A 72 572 179 HOH HOH . 
E 3 HOH A 73 573 180 HOH HOH . 
E 3 HOH A 74 574 181 HOH HOH . 
E 3 HOH A 75 575 182 HOH HOH . 
E 3 HOH A 76 576 183 HOH HOH . 
E 3 HOH A 77 577 184 HOH HOH . 
E 3 HOH A 78 578 185 HOH HOH . 
E 3 HOH A 79 579 186 HOH HOH . 
E 3 HOH A 80 580 187 HOH HOH . 
E 3 HOH A 81 581 200 HOH HOH . 
E 3 HOH A 82 582 73 HOH HOH . 
F 3 HOH B 1 501 1 HOH HOH . 
F 3 HOH B 2 502 2 HOH HOH . 
F 3 HOH B 3 503 3 HOH HOH . 
F 3 HOH B 4 504 9 HOH HOH . 
F 3 HOH B 5 505 10 HOH HOH . 
F 3 HOH B 6 506 11 HOH HOH . 
F 3 HOH B 7 507 12 HOH HOH . 
F 3 HOH B 8 508 13 HOH HOH . 
F 3 HOH B 9 509 14 HOH HOH . 
F 3 HOH B 10 510 15 HOH HOH . 
F 3 HOH B 11 511 16 HOH HOH . 
F 3 HOH B 12 512 17 HOH HOH . 
F 3 HOH B 13 513 18 HOH HOH . 
F 3 HOH B 14 514 19 HOH HOH . 
F 3 HOH B 15 515 20 HOH HOH . 
F 3 HOH B 16 516 21 HOH HOH . 
F 3 HOH B 17 517 22 HOH HOH . 
F 3 HOH B 18 518 23 HOH HOH . 
F 3 HOH B 19 519 24 HOH HOH . 
F 3 HOH B 20 520 25 HOH HOH . 
F 3 HOH B 21 521 26 HOH HOH . 
F 3 HOH B 22 522 27 HOH HOH . 
F 3 HOH B 23 523 30 HOH HOH . 
F 3 HOH B 24 524 32 HOH HOH . 
F 3 HOH B 25 525 34 HOH HOH . 
F 3 HOH B 26 526 35 HOH HOH . 
F 3 HOH B 27 527 41 HOH HOH . 
F 3 HOH B 28 528 42 HOH HOH . 
F 3 HOH B 29 529 43 HOH HOH . 
F 3 HOH B 30 530 44 HOH HOH . 
F 3 HOH B 31 531 45 HOH HOH . 
F 3 HOH B 32 532 47 HOH HOH . 
F 3 HOH B 33 533 48 HOH HOH . 
F 3 HOH B 34 534 49 HOH HOH . 
F 3 HOH B 35 535 50 HOH HOH . 
F 3 HOH B 36 536 51 HOH HOH . 
F 3 HOH B 37 537 52 HOH HOH . 
F 3 HOH B 38 538 54 HOH HOH . 
F 3 HOH B 39 539 55 HOH HOH . 
F 3 HOH B 40 540 56 HOH HOH . 
F 3 HOH B 41 541 60 HOH HOH . 
F 3 HOH B 42 542 63 HOH HOH . 
F 3 HOH B 43 543 64 HOH HOH . 
F 3 HOH B 44 544 65 HOH HOH . 
F 3 HOH B 45 545 69 HOH HOH . 
F 3 HOH B 46 546 70 HOH HOH . 
F 3 HOH B 47 547 71 HOH HOH . 
F 3 HOH B 48 548 74 HOH HOH . 
F 3 HOH B 49 549 75 HOH HOH . 
F 3 HOH B 50 550 76 HOH HOH . 
F 3 HOH B 51 551 88 HOH HOH . 
F 3 HOH B 52 552 94 HOH HOH . 
F 3 HOH B 53 553 95 HOH HOH . 
F 3 HOH B 54 554 104 HOH HOH . 
F 3 HOH B 55 555 119 HOH HOH . 
F 3 HOH B 56 556 120 HOH HOH . 
F 3 HOH B 57 557 121 HOH HOH . 
F 3 HOH B 58 558 122 HOH HOH . 
F 3 HOH B 59 559 123 HOH HOH . 
F 3 HOH B 60 560 124 HOH HOH . 
F 3 HOH B 61 561 125 HOH HOH . 
F 3 HOH B 62 562 126 HOH HOH . 
F 3 HOH B 63 563 127 HOH HOH . 
F 3 HOH B 64 564 128 HOH HOH . 
F 3 HOH B 65 565 129 HOH HOH . 
F 3 HOH B 66 566 130 HOH HOH . 
F 3 HOH B 67 567 131 HOH HOH . 
F 3 HOH B 68 568 132 HOH HOH . 
F 3 HOH B 69 569 133 HOH HOH . 
F 3 HOH B 70 570 134 HOH HOH . 
F 3 HOH B 71 571 135 HOH HOH . 
F 3 HOH B 72 572 136 HOH HOH . 
F 3 HOH B 73 573 137 HOH HOH . 
F 3 HOH B 74 574 138 HOH HOH . 
F 3 HOH B 75 575 139 HOH HOH . 
F 3 HOH B 76 576 140 HOH HOH . 
F 3 HOH B 77 577 141 HOH HOH . 
F 3 HOH B 78 578 142 HOH HOH . 
F 3 HOH B 79 579 143 HOH HOH . 
F 3 HOH B 80 580 144 HOH HOH . 
F 3 HOH B 81 581 145 HOH HOH . 
F 3 HOH B 82 582 146 HOH HOH . 
F 3 HOH B 83 583 147 HOH HOH . 
F 3 HOH B 84 584 148 HOH HOH . 
F 3 HOH B 85 585 149 HOH HOH . 
F 3 HOH B 86 586 150 HOH HOH . 
F 3 HOH B 87 587 151 HOH HOH . 
F 3 HOH B 88 588 152 HOH HOH . 
F 3 HOH B 89 589 153 HOH HOH . 
F 3 HOH B 90 590 154 HOH HOH . 
F 3 HOH B 91 591 155 HOH HOH . 
F 3 HOH B 92 592 156 HOH HOH . 
F 3 HOH B 93 593 157 HOH HOH . 
F 3 HOH B 94 594 158 HOH HOH . 
F 3 HOH B 95 595 159 HOH HOH . 
F 3 HOH B 96 596 160 HOH HOH . 
F 3 HOH B 97 597 161 HOH HOH . 
F 3 HOH B 98 598 162 HOH HOH . 
F 3 HOH B 99 599 163 HOH HOH . 
F 3 HOH B 100 600 164 HOH HOH . 
F 3 HOH B 101 601 168 HOH HOH . 
F 3 HOH B 102 602 169 HOH HOH . 
F 3 HOH B 103 603 170 HOH HOH . 
F 3 HOH B 104 604 173 HOH HOH . 
F 3 HOH B 105 605 174 HOH HOH . 
F 3 HOH B 106 606 175 HOH HOH . 
F 3 HOH B 107 607 188 HOH HOH . 
F 3 HOH B 108 608 189 HOH HOH . 
F 3 HOH B 109 609 190 HOH HOH . 
F 3 HOH B 110 610 191 HOH HOH . 
F 3 HOH B 111 611 192 HOH HOH . 
F 3 HOH B 112 612 193 HOH HOH . 
F 3 HOH B 113 613 194 HOH HOH . 
F 3 HOH B 114 614 195 HOH HOH . 
F 3 HOH B 115 615 196 HOH HOH . 
F 3 HOH B 116 616 197 HOH HOH . 
F 3 HOH B 117 617 198 HOH HOH . 
F 3 HOH B 118 618 199 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' GMP . . . C 2 2.982 12.281 27.856 1 27.44 ? O5' GMP 401 A 1 
HETATM 2 C C5' GMP . . . C 2 1.797 12.738 28.512 1 32.81 ? C5' GMP 401 A 1 
HETATM 3 C C4' GMP . . . C 2 1.317 11.586 29.441 1 33.77 ? C4' GMP 401 A 1 
HETATM 4 O O4' GMP . . . C 2 0.788 10.31 28.798 1 36.14 ? O4' GMP 401 A 1 
HETATM 5 C C3' GMP . . . C 2 2.438 11.077 30.364 1 33.85 ? C3' GMP 401 A 1 
HETATM 6 O O3' GMP . . . C 2 2.759 12.082 31.358 1 33.22 ? O3' GMP 401 A 1 
HETATM 7 C C2' GMP . . . C 2 1.793 9.828 30.931 1 34.59 ? C2' GMP 401 A 1 
HETATM 8 O O2' GMP . . . C 2 0.761 10.162 31.9 1 38.59 ? O2' GMP 401 A 1 
HETATM 9 C C1' GMP . . . C 2 1.12 9.219 29.666 1 33.53 ? C1' GMP 401 A 1 
HETATM 10 N N9 GMP . . . C 2 2.217 8.527 28.875 1 33.99 ? N9 GMP 401 A 1 
HETATM 11 C C8 GMP . . . C 2 2.991 8.91 27.857 1 31.49 ? C8 GMP 401 A 1 
HETATM 12 N N7 GMP . . . C 2 3.821 7.931 27.576 1 33.91 ? N7 GMP 401 A 1 
HETATM 13 C C5 GMP . . . C 2 3.532 6.888 28.384 1 33.12 ? C5 GMP 401 A 1 
HETATM 14 C C6 GMP . . . C 2 4.056 5.644 28.528 1 32.11 ? C6 GMP 401 A 1 
HETATM 15 O O6 GMP . . . C 2 4.976 5.18 27.849 1 29.31 ? O6 GMP 401 A 1 
HETATM 16 N N1 GMP . . . C 2 3.519 4.823 29.497 1 32.35 ? N1 GMP 401 A 1 
HETATM 17 C C2 GMP . . . C 2 2.483 5.3 30.337 1 32.93 ? C2 GMP 401 A 1 
HETATM 18 N N2 GMP . . . C 2 2.008 4.508 31.256 1 31.59 ? N2 GMP 401 A 1 
HETATM 19 N N3 GMP . . . C 2 1.976 6.524 30.179 1 30.37 ? N3 GMP 401 A 1 
HETATM 20 C C4 GMP . . . C 2 2.53 7.295 29.211 1 34.5 ? C4 GMP 401 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#