data_4DTA
#
_model_server_result.job_id            08a_nKVl2ODDJb64V9V6Ww 
_model_server_result.datetime_utc      '2024-11-05 07:54:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dta 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    4DTA 
#
_exptl.entry_id    4DTA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.94 
_cell.angle_gamma         90 
_cell.entry_id            4DTA 
_cell.length_a            42.113 
_cell.length_b            101.055 
_cell.length_c            73.031 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DTA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
A,B,C,D,E,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     4DTA 
_atom_sites.fract_transf_matrix[1][1]    0.023746 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004161 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009896 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013901 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADN A 1 401 1 ADN ADN . 
D 2 ADN B 1 401 1 ADN ADN . 
E 3 HOH A 1 501 1 HOH HOH . 
E 3 HOH A 2 502 2 HOH HOH . 
E 3 HOH A 3 503 4 HOH HOH . 
E 3 HOH A 4 504 7 HOH HOH . 
E 3 HOH A 5 505 8 HOH HOH . 
E 3 HOH A 6 506 9 HOH HOH . 
E 3 HOH A 7 507 10 HOH HOH . 
E 3 HOH A 8 508 11 HOH HOH . 
E 3 HOH A 9 509 13 HOH HOH . 
E 3 HOH A 10 510 15 HOH HOH . 
E 3 HOH A 11 511 16 HOH HOH . 
E 3 HOH A 12 512 17 HOH HOH . 
E 3 HOH A 13 513 18 HOH HOH . 
E 3 HOH A 14 514 19 HOH HOH . 
E 3 HOH A 15 515 20 HOH HOH . 
E 3 HOH A 16 516 21 HOH HOH . 
E 3 HOH A 17 517 22 HOH HOH . 
E 3 HOH A 18 518 23 HOH HOH . 
E 3 HOH A 19 519 24 HOH HOH . 
E 3 HOH A 20 520 25 HOH HOH . 
E 3 HOH A 21 521 26 HOH HOH . 
E 3 HOH A 22 522 27 HOH HOH . 
E 3 HOH A 23 523 28 HOH HOH . 
E 3 HOH A 24 524 29 HOH HOH . 
E 3 HOH A 25 525 30 HOH HOH . 
E 3 HOH A 26 526 31 HOH HOH . 
E 3 HOH A 27 527 32 HOH HOH . 
E 3 HOH A 28 528 33 HOH HOH . 
E 3 HOH A 29 529 34 HOH HOH . 
E 3 HOH A 30 530 35 HOH HOH . 
E 3 HOH A 31 531 36 HOH HOH . 
E 3 HOH A 32 532 37 HOH HOH . 
E 3 HOH A 33 533 38 HOH HOH . 
E 3 HOH A 34 534 39 HOH HOH . 
E 3 HOH A 35 535 40 HOH HOH . 
E 3 HOH A 36 536 41 HOH HOH . 
E 3 HOH A 37 537 43 HOH HOH . 
E 3 HOH A 38 538 44 HOH HOH . 
E 3 HOH A 39 539 45 HOH HOH . 
E 3 HOH A 40 540 46 HOH HOH . 
E 3 HOH A 41 541 47 HOH HOH . 
E 3 HOH A 42 542 48 HOH HOH . 
E 3 HOH A 43 543 49 HOH HOH . 
E 3 HOH A 44 544 50 HOH HOH . 
E 3 HOH A 45 545 51 HOH HOH . 
E 3 HOH A 46 546 52 HOH HOH . 
E 3 HOH A 47 547 53 HOH HOH . 
E 3 HOH A 48 548 54 HOH HOH . 
E 3 HOH A 49 549 55 HOH HOH . 
E 3 HOH A 50 550 56 HOH HOH . 
E 3 HOH A 51 551 57 HOH HOH . 
E 3 HOH A 52 552 58 HOH HOH . 
E 3 HOH A 53 553 59 HOH HOH . 
E 3 HOH A 54 554 88 HOH HOH . 
E 3 HOH A 55 555 89 HOH HOH . 
F 3 HOH B 1 501 42 HOH HOH . 
F 3 HOH B 2 502 3 HOH HOH . 
F 3 HOH B 3 503 5 HOH HOH . 
F 3 HOH B 4 504 6 HOH HOH . 
F 3 HOH B 5 505 12 HOH HOH . 
F 3 HOH B 6 506 14 HOH HOH . 
F 3 HOH B 7 507 60 HOH HOH . 
F 3 HOH B 8 508 61 HOH HOH . 
F 3 HOH B 9 509 62 HOH HOH . 
F 3 HOH B 10 510 63 HOH HOH . 
F 3 HOH B 11 511 64 HOH HOH . 
F 3 HOH B 12 512 65 HOH HOH . 
F 3 HOH B 13 513 66 HOH HOH . 
F 3 HOH B 14 514 68 HOH HOH . 
F 3 HOH B 15 515 69 HOH HOH . 
F 3 HOH B 16 516 70 HOH HOH . 
F 3 HOH B 17 517 71 HOH HOH . 
F 3 HOH B 18 518 72 HOH HOH . 
F 3 HOH B 19 519 73 HOH HOH . 
F 3 HOH B 20 520 74 HOH HOH . 
F 3 HOH B 21 521 75 HOH HOH . 
F 3 HOH B 22 522 76 HOH HOH . 
F 3 HOH B 23 523 77 HOH HOH . 
F 3 HOH B 24 524 78 HOH HOH . 
F 3 HOH B 25 525 79 HOH HOH . 
F 3 HOH B 26 526 80 HOH HOH . 
F 3 HOH B 27 527 81 HOH HOH . 
F 3 HOH B 28 528 82 HOH HOH . 
F 3 HOH B 29 529 83 HOH HOH . 
F 3 HOH B 30 530 84 HOH HOH . 
F 3 HOH B 31 531 85 HOH HOH . 
F 3 HOH B 32 532 86 HOH HOH . 
F 3 HOH B 33 533 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . D 2 12.433 -40.338 6.766 1 77.05 ? O5' ADN 401 B 1 
HETATM 2 C C5' ADN . . . D 2 12.531 -41.131 5.561 1 76.79 ? C5' ADN 401 B 1 
HETATM 3 C C4' ADN . . . D 2 13.714 -42.175 5.605 1 81.53 ? C4' ADN 401 B 1 
HETATM 4 O O4' ADN . . . D 2 13.892 -43.106 6.746 1 70.84 ? O4' ADN 401 B 1 
HETATM 5 C C3' ADN . . . D 2 13.609 -43.155 4.411 1 75.15 ? C3' ADN 401 B 1 
HETATM 6 O O3' ADN . . . D 2 14.911 -43.701 4.177 1 73.63 ? O3' ADN 401 B 1 
HETATM 7 C C2' ADN . . . D 2 12.701 -44.25 4.904 1 68.39 ? C2' ADN 401 B 1 
HETATM 8 O O2' ADN . . . D 2 13.09 -45.511 4.289 1 57.62 ? O2' ADN 401 B 1 
HETATM 9 C C1' ADN . . . D 2 13.042 -44.269 6.4 1 69.31 ? C1' ADN 401 B 1 
HETATM 10 N N9 ADN . . . D 2 11.889 -44.345 7.373 1 63.81 ? N9 ADN 401 B 1 
HETATM 11 C C8 ADN . . . D 2 11.366 -43.458 8.245 1 60.21 ? C8 ADN 401 B 1 
HETATM 12 N N7 ADN . . . D 2 10.388 -44.066 8.924 1 54.03 ? N7 ADN 401 B 1 
HETATM 13 C C5 ADN . . . D 2 10.316 -45.336 8.483 1 53.79 ? C5 ADN 401 B 1 
HETATM 14 C C6 ADN . . . D 2 9.532 -46.385 8.822 1 51.78 ? C6 ADN 401 B 1 
HETATM 15 N N6 ADN . . . D 2 8.616 -46.214 9.793 1 47.49 ? N6 ADN 401 B 1 
HETATM 16 N N1 ADN . . . D 2 9.669 -47.572 8.214 1 46.72 ? N1 ADN 401 B 1 
HETATM 17 C C2 ADN . . . D 2 10.638 -47.733 7.234 1 47.34 ? C2 ADN 401 B 1 
HETATM 18 N N3 ADN . . . D 2 11.445 -46.648 6.895 1 50.68 ? N3 ADN 401 B 1 
HETATM 19 C C4 ADN . . . D 2 11.261 -45.492 7.535 1 53.87 ? C4 ADN 401 B 1 
#
_model_server_stats.io_time_ms              123 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#