data_4DTB
#
_model_server_result.job_id            wL1UXLzdEviZmEUueGGNqw 
_model_server_result.datetime_utc      '2024-11-05 07:56:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dtb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4DTB 
#
_exptl.entry_id    4DTB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GUANOSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.6 
_cell.angle_gamma         90 
_cell.entry_id            4DTB 
_cell.length_a            42.272 
_cell.length_b            101.341 
_cell.length_c            73.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DTB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
A,B,C,D,E,F,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H13 N5 O5' 
_chem_comp.formula_weight    283.241 
_chem_comp.id                GMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GUANOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' GMP sing 129 n n 
O5' HO5' GMP sing 130 n n 
C5' C4' GMP sing 131 n n 
C5' "H5'1" GMP sing 132 n n 
C5' "H5'2" GMP sing 133 n n 
C4' O4' GMP sing 134 n n 
C4' C3' GMP sing 135 n n 
C4' H4' GMP sing 136 n n 
O4' C1' GMP sing 137 n n 
C3' O3' GMP sing 138 n n 
C3' C2' GMP sing 139 n n 
C3' H3' GMP sing 140 n n 
O3' HO3' GMP sing 141 n n 
C2' O2' GMP sing 142 n n 
C2' C1' GMP sing 143 n n 
C2' H2' GMP sing 144 n n 
O2' HO2' GMP sing 145 n n 
C1' N9 GMP sing 146 n n 
C1' H1' GMP sing 147 n n 
N9 C8 GMP sing 148 n y 
N9 C4 GMP sing 149 n y 
C8 N7 GMP doub 150 n y 
C8 H8 GMP sing 151 n n 
N7 C5 GMP sing 152 n y 
C5 C6 GMP sing 153 n n 
C5 C4 GMP doub 154 n y 
C6 O6 GMP doub 155 n n 
C6 N1 GMP sing 156 n n 
N1 C2 GMP sing 157 n n 
N1 HN1 GMP sing 158 n n 
C2 N2 GMP sing 159 n n 
C2 N3 GMP doub 160 n n 
N2 HN21 GMP sing 161 n n 
N2 HN22 GMP sing 162 n n 
N3 C4 GMP sing 163 n n 
#
_atom_sites.entry_id                     4DTB 
_atom_sites.fract_transf_matrix[1][1]    0.023656 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004426 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013823 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GMP A 1 401 1 GMP GNN . 
D 3 CL A 1 402 1 CL CL . 
E 2 GMP B 1 401 1 GMP GNN . 
F 4 HOH A 1 501 1 HOH HOH . 
F 4 HOH A 2 502 4 HOH HOH . 
F 4 HOH A 3 503 5 HOH HOH . 
F 4 HOH A 4 504 7 HOH HOH . 
F 4 HOH A 5 505 8 HOH HOH . 
F 4 HOH A 6 506 9 HOH HOH . 
F 4 HOH A 7 507 10 HOH HOH . 
F 4 HOH A 8 508 11 HOH HOH . 
F 4 HOH A 9 509 12 HOH HOH . 
F 4 HOH A 10 510 13 HOH HOH . 
F 4 HOH A 11 511 14 HOH HOH . 
F 4 HOH A 12 512 15 HOH HOH . 
F 4 HOH A 13 513 16 HOH HOH . 
F 4 HOH A 14 514 17 HOH HOH . 
F 4 HOH A 15 515 18 HOH HOH . 
F 4 HOH A 16 516 19 HOH HOH . 
F 4 HOH A 17 517 20 HOH HOH . 
F 4 HOH A 18 518 21 HOH HOH . 
F 4 HOH A 19 519 22 HOH HOH . 
F 4 HOH A 20 520 23 HOH HOH . 
F 4 HOH A 21 521 24 HOH HOH . 
F 4 HOH A 22 522 26 HOH HOH . 
F 4 HOH A 23 523 30 HOH HOH . 
F 4 HOH A 24 524 31 HOH HOH . 
F 4 HOH A 25 525 32 HOH HOH . 
F 4 HOH A 26 526 33 HOH HOH . 
F 4 HOH A 27 527 34 HOH HOH . 
F 4 HOH A 28 528 35 HOH HOH . 
F 4 HOH A 29 529 36 HOH HOH . 
F 4 HOH A 30 530 37 HOH HOH . 
F 4 HOH A 31 531 38 HOH HOH . 
F 4 HOH A 32 532 39 HOH HOH . 
F 4 HOH A 33 533 40 HOH HOH . 
F 4 HOH A 34 534 41 HOH HOH . 
F 4 HOH A 35 535 45 HOH HOH . 
F 4 HOH A 36 536 46 HOH HOH . 
F 4 HOH A 37 537 47 HOH HOH . 
F 4 HOH A 38 538 48 HOH HOH . 
F 4 HOH A 39 539 49 HOH HOH . 
F 4 HOH A 40 540 50 HOH HOH . 
F 4 HOH A 41 541 51 HOH HOH . 
F 4 HOH A 42 542 52 HOH HOH . 
F 4 HOH A 43 543 53 HOH HOH . 
F 4 HOH A 44 544 54 HOH HOH . 
F 4 HOH A 45 545 55 HOH HOH . 
F 4 HOH A 46 546 56 HOH HOH . 
F 4 HOH A 47 547 57 HOH HOH . 
F 4 HOH A 48 548 58 HOH HOH . 
F 4 HOH A 49 549 59 HOH HOH . 
F 4 HOH A 50 550 60 HOH HOH . 
F 4 HOH A 51 551 61 HOH HOH . 
F 4 HOH A 52 552 62 HOH HOH . 
F 4 HOH A 53 553 63 HOH HOH . 
F 4 HOH A 54 554 64 HOH HOH . 
F 4 HOH A 55 555 65 HOH HOH . 
F 4 HOH A 56 556 66 HOH HOH . 
F 4 HOH A 57 557 67 HOH HOH . 
F 4 HOH A 58 558 68 HOH HOH . 
F 4 HOH A 59 559 69 HOH HOH . 
F 4 HOH A 60 560 70 HOH HOH . 
F 4 HOH A 61 561 71 HOH HOH . 
F 4 HOH A 62 562 72 HOH HOH . 
F 4 HOH A 63 563 73 HOH HOH . 
F 4 HOH A 64 564 74 HOH HOH . 
F 4 HOH A 65 565 75 HOH HOH . 
F 4 HOH A 66 566 76 HOH HOH . 
F 4 HOH A 67 567 77 HOH HOH . 
F 4 HOH A 68 568 78 HOH HOH . 
F 4 HOH A 69 569 79 HOH HOH . 
F 4 HOH A 70 570 80 HOH HOH . 
F 4 HOH A 71 571 81 HOH HOH . 
F 4 HOH A 72 572 82 HOH HOH . 
F 4 HOH A 73 573 83 HOH HOH . 
F 4 HOH A 74 574 84 HOH HOH . 
F 4 HOH A 75 575 85 HOH HOH . 
F 4 HOH A 76 576 86 HOH HOH . 
F 4 HOH A 77 577 87 HOH HOH . 
F 4 HOH A 78 578 89 HOH HOH . 
F 4 HOH A 79 579 158 HOH HOH . 
F 4 HOH A 80 580 160 HOH HOH . 
F 4 HOH A 81 581 161 HOH HOH . 
F 4 HOH A 82 582 162 HOH HOH . 
F 4 HOH A 83 583 163 HOH HOH . 
F 4 HOH A 84 584 164 HOH HOH . 
F 4 HOH A 85 585 166 HOH HOH . 
F 4 HOH A 86 586 180 HOH HOH . 
F 4 HOH A 87 587 183 HOH HOH . 
F 4 HOH A 88 588 191 HOH HOH . 
F 4 HOH A 89 589 192 HOH HOH . 
F 4 HOH A 90 590 193 HOH HOH . 
F 4 HOH A 91 591 194 HOH HOH . 
F 4 HOH A 92 592 195 HOH HOH . 
F 4 HOH A 93 593 197 HOH HOH . 
G 4 HOH B 1 501 2 HOH HOH . 
G 4 HOH B 2 502 3 HOH HOH . 
G 4 HOH B 3 503 6 HOH HOH . 
G 4 HOH B 4 504 25 HOH HOH . 
G 4 HOH B 5 505 27 HOH HOH . 
G 4 HOH B 6 506 28 HOH HOH . 
G 4 HOH B 7 507 29 HOH HOH . 
G 4 HOH B 8 508 42 HOH HOH . 
G 4 HOH B 9 509 43 HOH HOH . 
G 4 HOH B 10 510 44 HOH HOH . 
G 4 HOH B 11 511 88 HOH HOH . 
G 4 HOH B 12 512 90 HOH HOH . 
G 4 HOH B 13 513 91 HOH HOH . 
G 4 HOH B 14 514 92 HOH HOH . 
G 4 HOH B 15 515 93 HOH HOH . 
G 4 HOH B 16 516 94 HOH HOH . 
G 4 HOH B 17 517 95 HOH HOH . 
G 4 HOH B 18 518 96 HOH HOH . 
G 4 HOH B 19 519 97 HOH HOH . 
G 4 HOH B 20 520 98 HOH HOH . 
G 4 HOH B 21 521 99 HOH HOH . 
G 4 HOH B 22 522 100 HOH HOH . 
G 4 HOH B 23 523 101 HOH HOH . 
G 4 HOH B 24 524 102 HOH HOH . 
G 4 HOH B 25 525 103 HOH HOH . 
G 4 HOH B 26 526 104 HOH HOH . 
G 4 HOH B 27 527 105 HOH HOH . 
G 4 HOH B 28 528 106 HOH HOH . 
G 4 HOH B 29 529 107 HOH HOH . 
G 4 HOH B 30 530 108 HOH HOH . 
G 4 HOH B 31 531 109 HOH HOH . 
G 4 HOH B 32 532 110 HOH HOH . 
G 4 HOH B 33 533 111 HOH HOH . 
G 4 HOH B 34 534 112 HOH HOH . 
G 4 HOH B 35 535 113 HOH HOH . 
G 4 HOH B 36 536 114 HOH HOH . 
G 4 HOH B 37 537 115 HOH HOH . 
G 4 HOH B 38 538 116 HOH HOH . 
G 4 HOH B 39 539 117 HOH HOH . 
G 4 HOH B 40 540 118 HOH HOH . 
G 4 HOH B 41 541 119 HOH HOH . 
G 4 HOH B 42 542 120 HOH HOH . 
G 4 HOH B 43 543 121 HOH HOH . 
G 4 HOH B 44 544 122 HOH HOH . 
G 4 HOH B 45 545 123 HOH HOH . 
G 4 HOH B 46 546 124 HOH HOH . 
G 4 HOH B 47 547 125 HOH HOH . 
G 4 HOH B 48 548 126 HOH HOH . 
G 4 HOH B 49 549 127 HOH HOH . 
G 4 HOH B 50 550 128 HOH HOH . 
G 4 HOH B 51 551 129 HOH HOH . 
G 4 HOH B 52 552 130 HOH HOH . 
G 4 HOH B 53 553 131 HOH HOH . 
G 4 HOH B 54 554 132 HOH HOH . 
G 4 HOH B 55 555 133 HOH HOH . 
G 4 HOH B 56 556 134 HOH HOH . 
G 4 HOH B 57 557 135 HOH HOH . 
G 4 HOH B 58 558 136 HOH HOH . 
G 4 HOH B 59 559 137 HOH HOH . 
G 4 HOH B 60 560 138 HOH HOH . 
G 4 HOH B 61 561 139 HOH HOH . 
G 4 HOH B 62 562 140 HOH HOH . 
G 4 HOH B 63 563 141 HOH HOH . 
G 4 HOH B 64 564 142 HOH HOH . 
G 4 HOH B 65 565 143 HOH HOH . 
G 4 HOH B 66 566 144 HOH HOH . 
G 4 HOH B 67 567 145 HOH HOH . 
G 4 HOH B 68 568 146 HOH HOH . 
G 4 HOH B 69 569 147 HOH HOH . 
G 4 HOH B 70 570 148 HOH HOH . 
G 4 HOH B 71 571 149 HOH HOH . 
G 4 HOH B 72 572 150 HOH HOH . 
G 4 HOH B 73 573 151 HOH HOH . 
G 4 HOH B 74 574 152 HOH HOH . 
G 4 HOH B 75 575 153 HOH HOH . 
G 4 HOH B 76 576 154 HOH HOH . 
G 4 HOH B 77 577 155 HOH HOH . 
G 4 HOH B 78 578 156 HOH HOH . 
G 4 HOH B 79 579 157 HOH HOH . 
G 4 HOH B 80 580 159 HOH HOH . 
G 4 HOH B 81 581 165 HOH HOH . 
G 4 HOH B 82 582 167 HOH HOH . 
G 4 HOH B 83 583 168 HOH HOH . 
G 4 HOH B 84 584 169 HOH HOH . 
G 4 HOH B 85 585 170 HOH HOH . 
G 4 HOH B 86 586 171 HOH HOH . 
G 4 HOH B 87 587 172 HOH HOH . 
G 4 HOH B 88 588 173 HOH HOH . 
G 4 HOH B 89 589 174 HOH HOH . 
G 4 HOH B 90 590 175 HOH HOH . 
G 4 HOH B 91 591 176 HOH HOH . 
G 4 HOH B 92 592 177 HOH HOH . 
G 4 HOH B 93 593 178 HOH HOH . 
G 4 HOH B 94 594 179 HOH HOH . 
G 4 HOH B 95 595 181 HOH HOH . 
G 4 HOH B 96 596 182 HOH HOH . 
G 4 HOH B 97 597 184 HOH HOH . 
G 4 HOH B 98 598 185 HOH HOH . 
G 4 HOH B 99 599 186 HOH HOH . 
G 4 HOH B 100 600 187 HOH HOH . 
G 4 HOH B 101 601 188 HOH HOH . 
G 4 HOH B 102 602 189 HOH HOH . 
G 4 HOH B 103 603 190 HOH HOH . 
G 4 HOH B 104 604 196 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' GMP . . . C 2 2.741 11.732 27.593 1 28.5 ? O5' GMP 401 A 1 
HETATM 2 C C5' GMP . . . C 2 1.575 12.242 28.22 1 35.25 ? C5' GMP 401 A 1 
HETATM 3 C C4' GMP . . . C 2 1.051 11.193 29.22 1 37.64 ? C4' GMP 401 A 1 
HETATM 4 O O4' GMP . . . C 2 0.592 9.932 28.588 1 37.01 ? O4' GMP 401 A 1 
HETATM 5 C C3' GMP . . . C 2 2.191 10.692 30.122 1 36.71 ? C3' GMP 401 A 1 
HETATM 6 O O3' GMP . . . C 2 2.655 11.677 31.111 1 35.29 ? O3' GMP 401 A 1 
HETATM 7 C C2' GMP . . . C 2 1.535 9.398 30.698 1 38.44 ? C2' GMP 401 A 1 
HETATM 8 O O2' GMP . . . C 2 0.478 9.723 31.573 1 40.65 ? O2' GMP 401 A 1 
HETATM 9 C C1' GMP . . . C 2 0.95 8.79 29.432 1 35.66 ? C1' GMP 401 A 1 
HETATM 10 N N9 GMP . . . C 2 2.034 8.047 28.671 1 36.86 ? N9 GMP 401 A 1 
HETATM 11 C C8 GMP . . . C 2 2.835 8.416 27.669 1 33.24 ? C8 GMP 401 A 1 
HETATM 12 N N7 GMP . . . C 2 3.631 7.378 27.388 1 35.43 ? N7 GMP 401 A 1 
HETATM 13 C C5 GMP . . . C 2 3.333 6.359 28.196 1 35.39 ? C5 GMP 401 A 1 
HETATM 14 C C6 GMP . . . C 2 3.801 5.091 28.319 1 34.78 ? C6 GMP 401 A 1 
HETATM 15 O O6 GMP . . . C 2 4.706 4.615 27.639 1 30.91 ? O6 GMP 401 A 1 
HETATM 16 N N1 GMP . . . C 2 3.237 4.273 29.279 1 36.08 ? N1 GMP 401 A 1 
HETATM 17 C C2 GMP . . . C 2 2.199 4.779 30.111 1 36.87 ? C2 GMP 401 A 1 
HETATM 18 N N2 GMP . . . C 2 1.643 4.017 31.042 1 37.43 ? N2 GMP 401 A 1 
HETATM 19 N N3 GMP . . . C 2 1.779 6.022 29.96 1 34.85 ? N3 GMP 401 A 1 
HETATM 20 C C4 GMP . . . C 2 2.338 6.795 29.005 1 37.54 ? C4 GMP 401 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#