data_4DTC # _model_server_result.job_id RTBDNjfxsXC_h_LetSBjzQ _model_server_result.datetime_utc '2024-11-21 17:18:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 4DTC # _exptl.entry_id 4DTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.419 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-3'-(trifluoromethyl)biphenyl-4-carboxamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DTC _cell.length_a 80.466 _cell.length_b 80.466 _cell.length_c 290.901 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C24 H20 F6 N2 O' _chem_comp.formula_weight 466.419 _chem_comp.id D5C _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-3'-(trifluoromethyl)biphenyl-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FBG CBD D5C sing 83 n n FBE CBD D5C sing 84 n n FBF CBD D5C sing 85 n n CBD CBB D5C sing 86 n n CBB CBA D5C doub 87 n y CBB CBC D5C sing 88 n y CBA CAZ D5C sing 89 n y CBC CAX D5C doub 90 n y CAZ CAY D5C doub 91 n y CAX CAY D5C sing 92 n y CAX CAU D5C sing 93 n n CAT CAU D5C doub 94 n y CAT CAS D5C sing 95 n y CAU CAV D5C sing 96 n y CAS CAR D5C doub 97 n y CAV CAW D5C doub 98 n y CAR CAW D5C sing 99 n y CAR CAP D5C sing 100 n n OAQ CAP D5C doub 101 n n CAP NAO D5C sing 102 n n NAO CAN D5C sing 103 n n CAN CAL D5C sing 104 n n CAL CAK D5C sing 105 n n CAK CAJ D5C sing 106 n n CAK NAM D5C sing 107 n n CAJ CAD D5C sing 108 n n CAC CAD D5C doub 109 n y CAC CAB D5C sing 110 n y FAI CAB D5C sing 111 n n CAD CAE D5C sing 112 n y CAB CAA D5C doub 113 n y CAE FAG D5C sing 114 n n CAE CAF D5C doub 115 n y CAA CAF D5C sing 116 n y CAA FAH D5C sing 117 n n CBC H1 D5C sing 118 n n CBA H2 D5C sing 119 n n CAZ H3 D5C sing 120 n n CAY H4 D5C sing 121 n n CAV H5 D5C sing 122 n n CAW H6 D5C sing 123 n n CAT H7 D5C sing 124 n n CAS H8 D5C sing 125 n n NAO H9 D5C sing 126 n n CAN H10 D5C sing 127 n n CAN H11 D5C sing 128 n n CAL H12 D5C sing 129 n n CAL H13 D5C sing 130 n n CAK H14 D5C sing 131 n n NAM H15 D5C sing 132 n n NAM H16 D5C sing 133 n n CAJ H18 D5C sing 134 n n CAJ H19 D5C sing 135 n n CAF H20 D5C sing 136 n n CAC H21 D5C sing 137 n n # _atom_sites.entry_id 4DTC _atom_sites.fract_transf_matrix[1][1] 0.012428 _atom_sites.fract_transf_matrix[1][2] 0.007175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 D5C A 1 801 814 D5C D5C . D 2 D5C B 1 801 813 D5C D5C . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FBE D5C . . . C 2 8.717 23.808 -31.346 1 105.77 ? FBE D5C 801 A 1 HETATM 2 C CBD D5C . . . C 2 7.422 23.945 -30.836 1 132.59 ? CBD D5C 801 A 1 HETATM 3 F FBF D5C . . . C 2 6.673 22.859 -31.229 1 133.68 ? FBF D5C 801 A 1 HETATM 4 F FBG D5C . . . C 2 6.876 25.066 -31.333 1 143.42 ? FBG D5C 801 A 1 HETATM 5 C CBB D5C . . . C 2 7.449 24.031 -29.412 1 137.52 ? CBB D5C 801 A 1 HETATM 6 C CBC D5C . . . C 2 7.115 22.934 -28.602 1 140.5 ? CBC D5C 801 A 1 HETATM 7 C CBA D5C . . . C 2 7.817 25.222 -28.778 1 138.77 ? CBA D5C 801 A 1 HETATM 8 C CAZ D5C . . . C 2 7.851 25.323 -27.382 1 136.54 ? CAZ D5C 801 A 1 HETATM 9 C CAY D5C . . . C 2 7.522 24.223 -26.594 1 134.27 ? CAY D5C 801 A 1 HETATM 10 C CAX D5C . . . C 2 7.162 23.014 -27.203 1 137.05 ? CAX D5C 801 A 1 HETATM 11 C CAU D5C . . . C 2 6.827 21.907 -26.407 1 139.04 ? CAU D5C 801 A 1 HETATM 12 C CAV D5C . . . C 2 7.678 20.775 -26.196 1 132.64 ? CAV D5C 801 A 1 HETATM 13 C CAW D5C . . . C 2 7.272 19.706 -25.369 1 127.87 ? CAW D5C 801 A 1 HETATM 14 C CAT D5C . . . C 2 5.572 21.959 -25.783 1 135.81 ? CAT D5C 801 A 1 HETATM 15 C CAS D5C . . . C 2 5.182 20.904 -24.974 1 136.92 ? CAS D5C 801 A 1 HETATM 16 C CAR D5C . . . C 2 5.994 19.776 -24.739 1 128.15 ? CAR D5C 801 A 1 HETATM 17 C CAP D5C . . . C 2 5.386 18.824 -23.894 1 123.32 ? CAP D5C 801 A 1 HETATM 18 O OAQ D5C . . . C 2 4.148 18.802 -23.841 1 139.93 ? OAQ D5C 801 A 1 HETATM 19 N NAO D5C . . . C 2 6.134 17.982 -23.148 1 95.52 ? NAO D5C 801 A 1 HETATM 20 C CAN D5C . . . C 2 5.446 17.011 -22.232 1 94.58 ? CAN D5C 801 A 1 HETATM 21 C CAL D5C . . . C 2 4.268 17.658 -21.407 1 85.36 ? CAL D5C 801 A 1 HETATM 22 C CAK D5C . . . C 2 3.432 16.724 -20.471 1 80.56 ? CAK D5C 801 A 1 HETATM 23 N NAM D5C . . . C 2 2.673 17.514 -19.495 1 77.44 ? NAM D5C 801 A 1 HETATM 24 C CAJ D5C . . . C 2 4.274 15.682 -19.686 1 90.73 ? CAJ D5C 801 A 1 HETATM 25 C CAD D5C . . . C 2 3.495 14.829 -18.879 1 79.19 ? CAD D5C 801 A 1 HETATM 26 C CAE D5C . . . C 2 3.507 14.931 -17.504 1 85.43 ? CAE D5C 801 A 1 HETATM 27 F FAG D5C . . . C 2 4.187 15.787 -16.969 1 102.12 ? FAG D5C 801 A 1 HETATM 28 C CAF D5C . . . C 2 2.732 14.085 -16.71 1 92.94 ? CAF D5C 801 A 1 HETATM 29 C CAA D5C . . . C 2 1.921 13.109 -17.292 1 89.07 ? CAA D5C 801 A 1 HETATM 30 F FAH D5C . . . C 2 1.126 12.254 -16.526 1 74.88 ? FAH D5C 801 A 1 HETATM 31 C CAB D5C . . . C 2 1.908 13.002 -18.672 1 90.55 ? CAB D5C 801 A 1 HETATM 32 F FAI D5C . . . C 2 1.14 12.101 -19.25 1 83.51 ? FAI D5C 801 A 1 HETATM 33 C CAC D5C . . . C 2 2.699 13.85 -19.45 1 93.44 ? CAC D5C 801 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #