data_4DTC
#
_model_server_result.job_id            ieyHSNrdN2-jErorQcfhiA 
_model_server_result.datetime_utc      '2024-11-21 17:13:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dtc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    4DTC 
#
_exptl.entry_id    4DTC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              466.419 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-3'-(trifluoromethyl)biphenyl-4-carboxamide" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DTC 
_cell.length_a            80.466 
_cell.length_b            80.466 
_cell.length_c            290.901 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DTC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C24 H20 F6 N2 O' 
_chem_comp.formula_weight    466.419 
_chem_comp.id                D5C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-3'-(trifluoromethyl)biphenyl-4-carboxamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FBG CBD D5C sing 83 n n 
FBE CBD D5C sing 84 n n 
FBF CBD D5C sing 85 n n 
CBD CBB D5C sing 86 n n 
CBB CBA D5C doub 87 n y 
CBB CBC D5C sing 88 n y 
CBA CAZ D5C sing 89 n y 
CBC CAX D5C doub 90 n y 
CAZ CAY D5C doub 91 n y 
CAX CAY D5C sing 92 n y 
CAX CAU D5C sing 93 n n 
CAT CAU D5C doub 94 n y 
CAT CAS D5C sing 95 n y 
CAU CAV D5C sing 96 n y 
CAS CAR D5C doub 97 n y 
CAV CAW D5C doub 98 n y 
CAR CAW D5C sing 99 n y 
CAR CAP D5C sing 100 n n 
OAQ CAP D5C doub 101 n n 
CAP NAO D5C sing 102 n n 
NAO CAN D5C sing 103 n n 
CAN CAL D5C sing 104 n n 
CAL CAK D5C sing 105 n n 
CAK CAJ D5C sing 106 n n 
CAK NAM D5C sing 107 n n 
CAJ CAD D5C sing 108 n n 
CAC CAD D5C doub 109 n y 
CAC CAB D5C sing 110 n y 
FAI CAB D5C sing 111 n n 
CAD CAE D5C sing 112 n y 
CAB CAA D5C doub 113 n y 
CAE FAG D5C sing 114 n n 
CAE CAF D5C doub 115 n y 
CAA CAF D5C sing 116 n y 
CAA FAH D5C sing 117 n n 
CBC H1 D5C sing 118 n n 
CBA H2 D5C sing 119 n n 
CAZ H3 D5C sing 120 n n 
CAY H4 D5C sing 121 n n 
CAV H5 D5C sing 122 n n 
CAW H6 D5C sing 123 n n 
CAT H7 D5C sing 124 n n 
CAS H8 D5C sing 125 n n 
NAO H9 D5C sing 126 n n 
CAN H10 D5C sing 127 n n 
CAN H11 D5C sing 128 n n 
CAL H12 D5C sing 129 n n 
CAL H13 D5C sing 130 n n 
CAK H14 D5C sing 131 n n 
NAM H15 D5C sing 132 n n 
NAM H16 D5C sing 133 n n 
CAJ H18 D5C sing 134 n n 
CAJ H19 D5C sing 135 n n 
CAF H20 D5C sing 136 n n 
CAC H21 D5C sing 137 n n 
#
_atom_sites.entry_id                     4DTC 
_atom_sites.fract_transf_matrix[1][1]    0.012428 
_atom_sites.fract_transf_matrix[1][2]    0.007175 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01435 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003438 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 D5C A 1 801 814 D5C D5C . 
D 2 D5C B 1 801 813 D5C D5C . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F FBE D5C . . . D 2 -17.513 9.117 34.127 1 137.93 ? FBE D5C 801 B 1 
HETATM 2 C CBD D5C . . . D 2 -16.667 10.041 33.579 1 147.83 ? CBD D5C 801 B 1 
HETATM 3 F FBF D5C . . . D 2 -15.395 9.7 33.89 1 150.95 ? FBF D5C 801 B 1 
HETATM 4 F FBG D5C . . . D 2 -16.944 11.273 34.08 1 144.61 ? FBG D5C 801 B 1 
HETATM 5 C CBB D5C . . . D 2 -16.832 10.071 32.18 1 151.69 ? CBB D5C 801 B 1 
HETATM 6 C CBC D5C . . . D 2 -15.734 9.889 31.326 1 142.52 ? CBC D5C 801 B 1 
HETATM 7 C CBA D5C . . . D 2 -18.103 10.284 31.63 1 144.06 ? CBA D5C 801 B 1 
HETATM 8 C CAZ D5C . . . D 2 -18.288 10.313 30.247 1 136.35 ? CAZ D5C 801 B 1 
HETATM 9 C CAY D5C . . . D 2 -17.185 10.136 29.411 1 135.57 ? CAY D5C 801 B 1 
HETATM 10 C CAX D5C . . . D 2 -15.908 9.929 29.942 1 130.65 ? CAX D5C 801 B 1 
HETATM 11 C CAU D5C . . . D 2 -14.82 9.719 29.098 1 125.37 ? CAU D5C 801 B 1 
HETATM 12 C CAV D5C . . . D 2 -14.544 8.384 28.665 1 135.3 ? CAV D5C 801 B 1 
HETATM 13 C CAW D5C . . . D 2 -13.465 8.106 27.83 1 130.71 ? CAW D5C 801 B 1 
HETATM 14 C CAT D5C . . . D 2 -13.992 10.797 28.7 1 117.96 ? CAT D5C 801 B 1 
HETATM 15 C CAS D5C . . . D 2 -12.917 10.523 27.861 1 123.66 ? CAS D5C 801 B 1 
HETATM 16 C CAR D5C . . . D 2 -12.633 9.194 27.408 1 125.27 ? CAR D5C 801 B 1 
HETATM 17 C CAP D5C . . . D 2 -11.518 8.952 26.567 1 120.41 ? CAP D5C 801 B 1 
HETATM 18 O OAQ D5C . . . D 2 -11.165 7.793 26.302 1 100.21 ? OAQ D5C 801 B 1 
HETATM 19 N NAO D5C . . . D 2 -10.859 10.049 26.095 1 110.64 ? NAO D5C 801 B 1 
HETATM 20 C CAN D5C . . . D 2 -9.645 9.927 25.262 1 93.01 ? CAN D5C 801 B 1 
HETATM 21 C CAL D5C . . . D 2 -9.948 10.14 23.79 1 80.37 ? CAL D5C 801 B 1 
HETATM 22 C CAK D5C . . . D 2 -8.638 10.403 23.057 1 85.91 ? CAK D5C 801 B 1 
HETATM 23 N NAM D5C . . . D 2 -8.924 11.201 21.854 1 90.78 ? NAM D5C 801 B 1 
HETATM 24 C CAJ D5C . . . D 2 -7.904 9.08 22.741 1 83.1 ? CAJ D5C 801 B 1 
HETATM 25 C CAD D5C . . . D 2 -6.814 9.215 21.854 1 85.78 ? CAD D5C 801 B 1 
HETATM 26 C CAE D5C . . . D 2 -6.971 9.099 20.476 1 88.71 ? CAE D5C 801 B 1 
HETATM 27 F FAG D5C . . . D 2 -8.114 8.906 19.989 1 108.71 ? FAG D5C 801 B 1 
HETATM 28 C CAF D5C . . . D 2 -5.892 9.227 19.612 1 89.75 ? CAF D5C 801 B 1 
HETATM 29 C CAA D5C . . . D 2 -4.63 9.448 20.134 1 89.15 ? CAA D5C 801 B 1 
HETATM 30 F FAH D5C . . . D 2 -3.606 9.57 19.403 1 96.14 ? FAH D5C 801 B 1 
HETATM 31 C CAB D5C . . . D 2 -4.457 9.545 21.488 1 87.67 ? CAB D5C 801 B 1 
HETATM 32 F FAI D5C . . . D 2 -3.277 9.742 21.906 1 92.99 ? FAI D5C 801 B 1 
HETATM 33 C CAC D5C . . . D 2 -5.539 9.435 22.358 1 89.45 ? CAC D5C 801 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#