data_4DTD # _model_server_result.job_id Xc4Va03rDtXYvZX6AiVGTA _model_server_result.datetime_utc '2024-12-08 12:32:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4DTD # _exptl.entry_id 4DTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DTD _cell.length_a 128.08 _cell.length_b 128.08 _cell.length_c 76.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/4 0 -1 0 -1 0 0 0 0 -1 128.08 128.08 -19.13 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 37 A ALA 25 1_555 A N MSE 38 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C MSE 38 A MSE 26 1_555 A N PRO 39 A PRO 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale3 A C PHE 58 A PHE 46 1_555 A N MSE 59 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C MSE 59 A MSE 47 1_555 A N LEU 60 A LEU 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C ASP 63 A ASP 51 1_555 A N MSE 64 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 64 A MSE 52 1_555 A N ASN 65 A ASN 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C GLU 97 A GLU 85 1_555 A N MSE 98 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale8 A C MSE 98 A MSE 86 1_555 A N ASP 99 A ASP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale9 A C ALA 110 A ALA 98 1_555 A N MSE 111 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale10 A C MSE 111 A MSE 99 1_555 A N LEU 112 A LEU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale11 A C THR 167 A THR 155 1_555 A N MSE 168 A MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale12 A C MSE 168 A MSE 156 1_555 A N THR 169 A THR 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale13 A C PRO 254 A PRO 242 1_555 A N MSE 255 A MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale14 A C MSE 255 A MSE 243 1_555 A N SER 256 A SER 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale15 A C VAL 298 A VAL 286 1_555 A N MSE 299 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale16 A C MSE 299 A MSE 287 1_555 A N LYS 300 A LYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4DTD _atom_sites.fract_transf_matrix[1][1] 0.007808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 541 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 49 HOH HOH . C 3 HOH A 49 549 50 HOH HOH . C 3 HOH A 50 550 51 HOH HOH . C 3 HOH A 51 551 52 HOH HOH . C 3 HOH A 52 552 53 HOH HOH . C 3 HOH A 53 553 54 HOH HOH . C 3 HOH A 54 554 55 HOH HOH . C 3 HOH A 55 555 56 HOH HOH . C 3 HOH A 56 556 57 HOH HOH . C 3 HOH A 57 557 58 HOH HOH . C 3 HOH A 58 558 59 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 61 HOH HOH . C 3 HOH A 61 561 62 HOH HOH . C 3 HOH A 62 562 64 HOH HOH . C 3 HOH A 63 563 65 HOH HOH . C 3 HOH A 64 564 66 HOH HOH . C 3 HOH A 65 565 67 HOH HOH . C 3 HOH A 66 566 68 HOH HOH . C 3 HOH A 67 567 69 HOH HOH . C 3 HOH A 68 568 70 HOH HOH . C 3 HOH A 69 569 72 HOH HOH . C 3 HOH A 70 570 73 HOH HOH . C 3 HOH A 71 571 74 HOH HOH . C 3 HOH A 72 572 75 HOH HOH . C 3 HOH A 73 573 76 HOH HOH . C 3 HOH A 74 574 77 HOH HOH . C 3 HOH A 75 575 79 HOH HOH . C 3 HOH A 76 576 80 HOH HOH . C 3 HOH A 77 577 81 HOH HOH . C 3 HOH A 78 578 82 HOH HOH . C 3 HOH A 79 579 83 HOH HOH . C 3 HOH A 80 580 84 HOH HOH . C 3 HOH A 81 581 85 HOH HOH . C 3 HOH A 82 582 86 HOH HOH . C 3 HOH A 83 583 87 HOH HOH . C 3 HOH A 84 584 88 HOH HOH . C 3 HOH A 85 585 89 HOH HOH . C 3 HOH A 86 586 90 HOH HOH . C 3 HOH A 87 587 91 HOH HOH . C 3 HOH A 88 588 92 HOH HOH . C 3 HOH A 89 589 93 HOH HOH . C 3 HOH A 90 590 94 HOH HOH . C 3 HOH A 91 591 95 HOH HOH . C 3 HOH A 92 592 96 HOH HOH . C 3 HOH A 93 593 97 HOH HOH . C 3 HOH A 94 594 98 HOH HOH . C 3 HOH A 95 595 99 HOH HOH . C 3 HOH A 96 596 600 HOH HOH . C 3 HOH A 97 597 101 HOH HOH . C 3 HOH A 98 598 102 HOH HOH . C 3 HOH A 99 599 103 HOH HOH . C 3 HOH A 100 600 104 HOH HOH . C 3 HOH A 101 601 105 HOH HOH . C 3 HOH A 102 602 106 HOH HOH . C 3 HOH A 103 603 107 HOH HOH . C 3 HOH A 104 604 108 HOH HOH . C 3 HOH A 105 605 109 HOH HOH . C 3 HOH A 106 606 110 HOH HOH . C 3 HOH A 107 607 611 HOH HOH . C 3 HOH A 108 608 112 HOH HOH . C 3 HOH A 109 609 114 HOH HOH . C 3 HOH A 110 610 115 HOH HOH . C 3 HOH A 111 611 116 HOH HOH . C 3 HOH A 112 612 117 HOH HOH . C 3 HOH A 113 613 118 HOH HOH . C 3 HOH A 114 614 119 HOH HOH . C 3 HOH A 115 615 120 HOH HOH . C 3 HOH A 116 616 121 HOH HOH . C 3 HOH A 117 617 122 HOH HOH . C 3 HOH A 118 618 123 HOH HOH . C 3 HOH A 119 619 624 HOH HOH . C 3 HOH A 120 620 125 HOH HOH . C 3 HOH A 121 621 126 HOH HOH . C 3 HOH A 122 622 627 HOH HOH . C 3 HOH A 123 623 128 HOH HOH . C 3 HOH A 124 624 629 HOH HOH . C 3 HOH A 125 625 130 HOH HOH . C 3 HOH A 126 626 131 HOH HOH . C 3 HOH A 127 627 132 HOH HOH . C 3 HOH A 128 628 133 HOH HOH . C 3 HOH A 129 629 134 HOH HOH . C 3 HOH A 130 630 135 HOH HOH . C 3 HOH A 131 631 136 HOH HOH . C 3 HOH A 132 632 137 HOH HOH . C 3 HOH A 133 633 138 HOH HOH . C 3 HOH A 134 634 139 HOH HOH . C 3 HOH A 135 635 140 HOH HOH . C 3 HOH A 136 636 141 HOH HOH . C 3 HOH A 137 637 142 HOH HOH . C 3 HOH A 138 638 143 HOH HOH . C 3 HOH A 139 639 144 HOH HOH . C 3 HOH A 140 640 145 HOH HOH . C 3 HOH A 141 641 646 HOH HOH . C 3 HOH A 142 642 147 HOH HOH . C 3 HOH A 143 643 148 HOH HOH . C 3 HOH A 144 644 149 HOH HOH . C 3 HOH A 145 645 150 HOH HOH . C 3 HOH A 146 646 151 HOH HOH . C 3 HOH A 147 647 152 HOH HOH . C 3 HOH A 148 648 153 HOH HOH . C 3 HOH A 149 649 154 HOH HOH . C 3 HOH A 150 650 155 HOH HOH . C 3 HOH A 151 651 156 HOH HOH . C 3 HOH A 152 652 157 HOH HOH . C 3 HOH A 153 653 158 HOH HOH . C 3 HOH A 154 654 159 HOH HOH . C 3 HOH A 155 655 160 HOH HOH . C 3 HOH A 156 656 161 HOH HOH . C 3 HOH A 157 657 162 HOH HOH . C 3 HOH A 158 658 163 HOH HOH . C 3 HOH A 159 659 164 HOH HOH . C 3 HOH A 160 660 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 41.895 83.346 -5.586 1 90.48 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 41.453 84.667 -5.364 1 89.05 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 41.539 82.509 -4.37 1 90.35 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 41.853 83.278 -3.226 1 91.18 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 42.461 81.305 -4.342 1 90.59 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 42.213 80.578 -3.147 1 90.62 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 541 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #