data_4DTT # _model_server_result.job_id mG7qLAFiTqAxBMlMPTO1GQ _model_server_result.datetime_utc '2024-10-22 21:39:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dtt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1103}' # _entry.id 4DTT # _exptl.entry_id 4DTT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.391 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[2-[[(2S)-3-(3H-IMIDAZOL-4-YL)-1-METHOXY-1-OXO-PROPAN-2-YL]AMINO]-2-OXO-ETHYL]-(PHENYLMETHYL)AMINO]ETHANOIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DTT _cell.length_a 263.518 _cell.length_b 263.518 _cell.length_c 90.401 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 C ZN ZN . A ZN 1101 1_555 D O19 I41 . A I41 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 B NE2 HIS 79 B HIS 108 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc6 B NE2 HIS 83 B HIS 112 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 B OE1 GLU 160 B GLU 189 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc8 F ZN ZN . B ZN 1101 1_555 G O19 I41 . B I41 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C18 H22 N4 O5' _chem_comp.formula_weight 374.391 _chem_comp.id I41 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[2-[[(2S)-3-(3H-IMIDAZOL-4-YL)-1-METHOXY-1-OXO-PROPAN-2-YL]AMINO]-2-OXO-ETHYL]-(PHENYLMETHYL)AMINO]ETHANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'COMPOUND 41367' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O04 C03 I41 doub 152 n n C03 O02 I41 sing 153 n n C03 C05 I41 sing 154 n n O02 C01 I41 sing 155 n n C05 C06 I41 sing 156 n n C05 N12 I41 sing 157 n n C06 C07 I41 sing 158 n n C07 C08 I41 doub 159 n y C07 N11 I41 sing 160 n y C08 N09 I41 sing 161 n y N09 C10 I41 doub 162 n y C10 N11 I41 sing 163 n y N12 C13 I41 sing 164 n n C13 O14 I41 doub 165 n n C13 C15 I41 sing 166 n n C15 N16 I41 sing 167 n n N16 C17 I41 sing 168 n n N16 C21 I41 sing 169 n n C17 C18 I41 sing 170 n n C18 O19 I41 sing 171 n n C18 O20 I41 doub 172 n n C21 C22 I41 sing 173 n n C22 C23 I41 sing 174 n y C22 C27 I41 doub 175 n y C23 C24 I41 doub 176 n y C24 C25 I41 sing 177 n y C25 C26 I41 doub 178 n y C26 C27 I41 sing 179 n y C05 H05 I41 sing 180 n n C01 H011 I41 sing 181 n n C01 H012 I41 sing 182 n n C01 H013 I41 sing 183 n n C06 H061 I41 sing 184 n n C06 H062 I41 sing 185 n n N12 H12 I41 sing 186 n n C08 H08 I41 sing 187 n n N11 H11 I41 sing 188 n n C10 H10 I41 sing 189 n n C15 H151 I41 sing 190 n n C15 H152 I41 sing 191 n n C17 H171 I41 sing 192 n n C17 H172 I41 sing 193 n n C21 H211 I41 sing 194 n n C21 H212 I41 sing 195 n n O19 H19 I41 sing 196 n n C23 H23 I41 sing 197 n n C27 H27 I41 sing 198 n n C24 H24 I41 sing 199 n n C25 H25 I41 sing 200 n n C26 H26 I41 sing 201 n n # _atom_sites.entry_id 4DTT _atom_sites.fract_transf_matrix[1][1] 0.003795 _atom_sites.fract_transf_matrix[1][2] 0.002191 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1101 2 ZN ZN . D 3 I41 A 1 1102 1 I41 I41 . E 3 I41 A 1 1103 1020 I41 I41 . F 2 ZN B 1 1101 1 ZN ZN . G 3 I41 B 1 1102 1020 I41 I41 . H 3 I41 B 1 1103 1021 I41 I41 . I 4 HOH A 1 1201 4 HOH HOH . I 4 HOH A 2 1202 6 HOH HOH . I 4 HOH A 3 1203 14 HOH HOH . I 4 HOH A 4 1204 27 HOH HOH . I 4 HOH A 5 1205 1021 HOH HOH . I 4 HOH A 6 1206 1022 HOH HOH . I 4 HOH A 7 1207 1023 HOH HOH . I 4 HOH A 8 1208 1024 HOH HOH . I 4 HOH A 9 1209 1025 HOH HOH . I 4 HOH A 10 1210 1026 HOH HOH . I 4 HOH A 11 1211 1027 HOH HOH . I 4 HOH A 12 1212 1028 HOH HOH . I 4 HOH A 13 1213 1029 HOH HOH . I 4 HOH A 14 1214 1030 HOH HOH . I 4 HOH A 15 1215 1031 HOH HOH . I 4 HOH A 16 1216 1032 HOH HOH . I 4 HOH A 17 1217 1033 HOH HOH . I 4 HOH A 18 1218 1034 HOH HOH . I 4 HOH A 19 1219 1035 HOH HOH . I 4 HOH A 20 1220 1036 HOH HOH . I 4 HOH A 21 1221 1037 HOH HOH . I 4 HOH A 22 1222 1038 HOH HOH . I 4 HOH A 23 1223 1039 HOH HOH . I 4 HOH A 24 1224 1040 HOH HOH . I 4 HOH A 25 1225 1041 HOH HOH . I 4 HOH A 26 1226 1042 HOH HOH . I 4 HOH A 27 1227 1043 HOH HOH . I 4 HOH A 28 1228 1044 HOH HOH . I 4 HOH A 29 1229 1045 HOH HOH . I 4 HOH A 30 1230 1046 HOH HOH . I 4 HOH A 31 1231 1047 HOH HOH . I 4 HOH A 32 1232 1048 HOH HOH . I 4 HOH A 33 1233 1049 HOH HOH . I 4 HOH A 34 1234 1050 HOH HOH . I 4 HOH A 35 1235 1051 HOH HOH . I 4 HOH A 36 1236 1052 HOH HOH . I 4 HOH A 37 1237 1053 HOH HOH . I 4 HOH A 38 1238 1054 HOH HOH . I 4 HOH A 39 1239 1055 HOH HOH . I 4 HOH A 40 1240 1056 HOH HOH . I 4 HOH A 41 1241 1057 HOH HOH . I 4 HOH A 42 1242 1058 HOH HOH . I 4 HOH A 43 1243 1059 HOH HOH . I 4 HOH A 44 1244 1060 HOH HOH . I 4 HOH A 45 1245 1061 HOH HOH . I 4 HOH A 46 1246 1062 HOH HOH . I 4 HOH A 47 1247 1063 HOH HOH . J 4 HOH B 1 1201 2 HOH HOH . J 4 HOH B 2 1202 8 HOH HOH . J 4 HOH B 3 1203 15 HOH HOH . J 4 HOH B 4 1204 1022 HOH HOH . J 4 HOH B 5 1205 1023 HOH HOH . J 4 HOH B 6 1206 1024 HOH HOH . J 4 HOH B 7 1207 1025 HOH HOH . J 4 HOH B 8 1208 1026 HOH HOH . J 4 HOH B 9 1209 1027 HOH HOH . J 4 HOH B 10 1210 1028 HOH HOH . J 4 HOH B 11 1211 1029 HOH HOH . J 4 HOH B 12 1212 1030 HOH HOH . J 4 HOH B 13 1213 1031 HOH HOH . J 4 HOH B 14 1214 1032 HOH HOH . J 4 HOH B 15 1215 1033 HOH HOH . J 4 HOH B 16 1216 1034 HOH HOH . J 4 HOH B 17 1217 1035 HOH HOH . J 4 HOH B 18 1218 1036 HOH HOH . J 4 HOH B 19 1219 1037 HOH HOH . J 4 HOH B 20 1220 1038 HOH HOH . J 4 HOH B 21 1221 1039 HOH HOH . J 4 HOH B 22 1222 1040 HOH HOH . J 4 HOH B 23 1223 1041 HOH HOH . J 4 HOH B 24 1224 1042 HOH HOH . J 4 HOH B 25 1225 1043 HOH HOH . J 4 HOH B 26 1226 1044 HOH HOH . J 4 HOH B 27 1227 1045 HOH HOH . J 4 HOH B 28 1228 1046 HOH HOH . J 4 HOH B 29 1229 1047 HOH HOH . J 4 HOH B 30 1230 1048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O04 I41 . . . H 3 115.417 9.854 19.112 1 91.61 ? O04 I41 1103 B 1 HETATM 2 C C03 I41 . . . H 3 114.844 9.032 18.403 1 91.81 ? C03 I41 1103 B 1 HETATM 3 O O02 I41 . . . H 3 113.971 9.545 17.333 1 92.17 ? O02 I41 1103 B 1 HETATM 4 C C01 I41 . . . H 3 112.694 8.989 16.966 1 92.27 ? C01 I41 1103 B 1 HETATM 5 C C05 I41 . . . H 3 115.049 7.567 18.7 1 91.85 ? C05 I41 1103 B 1 HETATM 6 C C06 I41 . . . H 3 114.649 6.716 17.479 1 89.51 ? C06 I41 1103 B 1 HETATM 7 C C07 I41 . . . H 3 115.354 5.383 17.237 1 87.03 ? C07 I41 1103 B 1 HETATM 8 C C08 I41 . . . H 3 114.697 4.172 16.937 1 84.93 ? C08 I41 1103 B 1 HETATM 9 N N09 I41 . . . H 3 115.57 3.163 16.759 1 82.37 ? N09 I41 1103 B 1 HETATM 10 C C10 I41 . . . H 3 116.882 3.757 16.945 1 83.41 ? C10 I41 1103 B 1 HETATM 11 N N11 I41 . . . H 3 116.689 5.17 17.252 1 85.23 ? N11 I41 1103 B 1 HETATM 12 N N12 I41 . . . H 3 114.165 7.277 19.837 1 95.14 ? N12 I41 1103 B 1 HETATM 13 C C13 I41 . . . H 3 114.158 6.156 20.569 1 98.03 ? C13 I41 1103 B 1 HETATM 14 O O14 I41 . . . H 3 114.912 5.21 20.338 1 99.74 ? O14 I41 1103 B 1 HETATM 15 C C15 I41 . . . H 3 113.142 6.057 21.711 1 99.17 ? C15 I41 1103 B 1 HETATM 16 N N16 I41 . . . H 3 113.409 6.968 22.866 1 99.69 ? N16 I41 1103 B 1 HETATM 17 C C17 I41 . . . H 3 112.54 6.418 23.952 1 98.57 ? C17 I41 1103 B 1 HETATM 18 C C18 I41 . . . H 3 111.432 7.313 24.5 1 97.61 ? C18 I41 1103 B 1 HETATM 19 O O19 I41 . . . H 3 110.966 7.117 25.661 1 95.31 ? O19 I41 1103 B 1 HETATM 20 O O20 I41 . . . H 3 111.008 8.244 23.766 1 98.4 ? O20 I41 1103 B 1 HETATM 21 C C21 I41 . . . H 3 114.884 7.083 23.145 1 100.65 ? C21 I41 1103 B 1 HETATM 22 C C22 I41 . . . H 3 115.3 6.375 24.43 1 103.77 ? C22 I41 1103 B 1 HETATM 23 C C23 I41 . . . H 3 115.707 7.14 25.528 1 104.92 ? C23 I41 1103 B 1 HETATM 24 C C24 I41 . . . H 3 116.093 6.517 26.816 1 106.46 ? C24 I41 1103 B 1 HETATM 25 C C25 I41 . . . H 3 116.035 5.034 26.875 1 106.26 ? C25 I41 1103 B 1 HETATM 26 C C26 I41 . . . H 3 115.621 4.29 25.763 1 106.02 ? C26 I41 1103 B 1 HETATM 27 C C27 I41 . . . H 3 115.261 4.962 24.571 1 105.72 ? C27 I41 1103 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #