data_4DU6
#
_model_server_result.job_id            DMdsCfDWZsx8GkwCyJAbxA 
_model_server_result.datetime_utc      '2025-04-04 10:12:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4du6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":304}' 
#
_entry.id    4DU6 
#
_exptl.entry_id    4DU6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.89 
_cell.angle_gamma         90 
_cell.entry_id            4DU6 
_cell.length_a            174.047 
_cell.length_b            104.912 
_cell.length_c            70.07 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 174.047 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 P N N 
? 6 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 112 B CYS 109 1_555 B SG CYS 183 B CYS 180 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 C SG CYS 112 C CYS 109 1_555 C SG CYS 183 C CYS 180 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 D SG CYS 112 D CYS 109 1_555 D SG CYS 183 D CYS 180 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 E SG CYS 112 E CYS 109 1_555 E SG CYS 183 E CYS 180 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4DU6 
_atom_sites.fract_transf_matrix[1][1]    0.005746 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000694 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009532 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014375 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 GTP A 1 301 230 GTP GTP . 
G 3 GOL A 1 302 230 GOL GOL . 
H 3 GOL B 1 301 240 GOL GOL . 
I 4 PEG B 1 302 230 PEG PEG . 
J 5 TRS B 1 303 232 TRS TRS . 
K 2 GTP B 1 304 233 GTP GTP . 
L 6 CA B 1 305 234 CA CA . 
M 3 GOL C 1 301 231 GOL GOL . 
N 2 GTP C 1 302 231 GTP GTP . 
O 5 TRS C 1 303 232 TRS TRS . 
P 6 CA C 1 304 233 CA CA . 
Q 3 GOL C 1 305 234 GOL GOL . 
R 3 GOL C 1 306 235 GOL GOL . 
S 3 GOL D 1 301 230 GOL GOL . 
T 2 GTP D 1 302 231 GTP GTP . 
U 5 TRS D 1 303 232 TRS TRS . 
V 6 CA D 1 304 233 CA CA . 
W 3 GOL E 1 301 230 GOL GOL . 
X 2 GTP E 1 302 231 GTP GTP . 
Y 7 HOH A 1 401 10 HOH HOH . 
Y 7 HOH A 2 402 20 HOH HOH . 
Y 7 HOH A 3 403 30 HOH HOH . 
Y 7 HOH A 4 404 36 HOH HOH . 
Y 7 HOH A 5 405 52 HOH HOH . 
Y 7 HOH A 6 406 53 HOH HOH . 
Y 7 HOH A 7 407 54 HOH HOH . 
Y 7 HOH A 8 408 60 HOH HOH . 
Y 7 HOH A 9 409 61 HOH HOH . 
Y 7 HOH A 10 410 62 HOH HOH . 
Y 7 HOH A 11 411 63 HOH HOH . 
Y 7 HOH A 12 412 64 HOH HOH . 
Y 7 HOH A 13 413 65 HOH HOH . 
Y 7 HOH A 14 414 66 HOH HOH . 
Y 7 HOH A 15 415 67 HOH HOH . 
Y 7 HOH A 16 416 68 HOH HOH . 
Y 7 HOH A 17 417 71 HOH HOH . 
Y 7 HOH A 18 418 72 HOH HOH . 
Y 7 HOH A 19 419 73 HOH HOH . 
Y 7 HOH A 20 420 78 HOH HOH . 
Y 7 HOH A 21 421 80 HOH HOH . 
Y 7 HOH A 22 422 82 HOH HOH . 
Y 7 HOH A 23 423 101 HOH HOH . 
Y 7 HOH A 24 424 109 HOH HOH . 
Y 7 HOH A 25 425 118 HOH HOH . 
Y 7 HOH A 26 426 119 HOH HOH . 
Y 7 HOH A 27 427 124 HOH HOH . 
Y 7 HOH A 28 428 125 HOH HOH . 
Y 7 HOH A 29 429 127 HOH HOH . 
Y 7 HOH A 30 430 149 HOH HOH . 
Y 7 HOH A 31 431 150 HOH HOH . 
Y 7 HOH A 32 432 151 HOH HOH . 
Y 7 HOH A 33 433 152 HOH HOH . 
Y 7 HOH A 34 434 182 HOH HOH . 
Z 7 HOH B 1 401 4 HOH HOH . 
Z 7 HOH B 2 402 5 HOH HOH . 
Z 7 HOH B 3 403 8 HOH HOH . 
Z 7 HOH B 4 404 16 HOH HOH . 
Z 7 HOH B 5 405 18 HOH HOH . 
Z 7 HOH B 6 406 19 HOH HOH . 
Z 7 HOH B 7 407 24 HOH HOH . 
Z 7 HOH B 8 408 29 HOH HOH . 
Z 7 HOH B 9 409 33 HOH HOH . 
Z 7 HOH B 10 410 35 HOH HOH . 
Z 7 HOH B 11 411 38 HOH HOH . 
Z 7 HOH B 12 412 39 HOH HOH . 
Z 7 HOH B 13 413 40 HOH HOH . 
Z 7 HOH B 14 414 42 HOH HOH . 
Z 7 HOH B 15 415 43 HOH HOH . 
Z 7 HOH B 16 416 48 HOH HOH . 
Z 7 HOH B 17 417 51 HOH HOH . 
Z 7 HOH B 18 418 55 HOH HOH . 
Z 7 HOH B 19 419 56 HOH HOH . 
Z 7 HOH B 20 420 57 HOH HOH . 
Z 7 HOH B 21 421 58 HOH HOH . 
Z 7 HOH B 22 422 59 HOH HOH . 
Z 7 HOH B 23 423 69 HOH HOH . 
Z 7 HOH B 24 424 75 HOH HOH . 
Z 7 HOH B 25 425 83 HOH HOH . 
Z 7 HOH B 26 426 105 HOH HOH . 
Z 7 HOH B 27 427 107 HOH HOH . 
Z 7 HOH B 28 428 108 HOH HOH . 
Z 7 HOH B 29 429 110 HOH HOH . 
Z 7 HOH B 30 430 113 HOH HOH . 
Z 7 HOH B 31 431 120 HOH HOH . 
Z 7 HOH B 32 432 121 HOH HOH . 
Z 7 HOH B 33 433 122 HOH HOH . 
Z 7 HOH B 34 434 123 HOH HOH . 
Z 7 HOH B 35 435 126 HOH HOH . 
Z 7 HOH B 36 436 128 HOH HOH . 
Z 7 HOH B 37 437 148 HOH HOH . 
Z 7 HOH B 38 438 158 HOH HOH . 
Z 7 HOH B 39 439 159 HOH HOH . 
Z 7 HOH B 40 440 160 HOH HOH . 
Z 7 HOH B 41 441 161 HOH HOH . 
Z 7 HOH B 42 442 162 HOH HOH . 
Z 7 HOH B 43 443 163 HOH HOH . 
Z 7 HOH B 44 444 164 HOH HOH . 
Z 7 HOH B 45 445 165 HOH HOH . 
Z 7 HOH B 46 446 166 HOH HOH . 
Z 7 HOH B 47 447 169 HOH HOH . 
Z 7 HOH B 48 448 181 HOH HOH . 
AA 7 HOH C 1 401 2 HOH HOH . 
AA 7 HOH C 2 402 3 HOH HOH . 
AA 7 HOH C 3 403 6 HOH HOH . 
AA 7 HOH C 4 404 7 HOH HOH . 
AA 7 HOH C 5 405 11 HOH HOH . 
AA 7 HOH C 6 406 12 HOH HOH . 
AA 7 HOH C 7 407 15 HOH HOH . 
AA 7 HOH C 8 408 22 HOH HOH . 
AA 7 HOH C 9 409 23 HOH HOH . 
AA 7 HOH C 10 410 26 HOH HOH . 
AA 7 HOH C 11 411 28 HOH HOH . 
AA 7 HOH C 12 412 41 HOH HOH . 
AA 7 HOH C 13 413 46 HOH HOH . 
AA 7 HOH C 14 414 47 HOH HOH . 
AA 7 HOH C 15 415 49 HOH HOH . 
AA 7 HOH C 16 416 50 HOH HOH . 
AA 7 HOH C 17 417 74 HOH HOH . 
AA 7 HOH C 18 418 76 HOH HOH . 
AA 7 HOH C 19 419 77 HOH HOH . 
AA 7 HOH C 20 420 84 HOH HOH . 
AA 7 HOH C 21 421 85 HOH HOH . 
AA 7 HOH C 22 422 86 HOH HOH . 
AA 7 HOH C 23 423 87 HOH HOH . 
AA 7 HOH C 24 424 102 HOH HOH . 
AA 7 HOH C 25 425 103 HOH HOH . 
AA 7 HOH C 26 426 104 HOH HOH . 
AA 7 HOH C 27 427 106 HOH HOH . 
AA 7 HOH C 28 428 114 HOH HOH . 
AA 7 HOH C 29 429 116 HOH HOH . 
AA 7 HOH C 30 430 129 HOH HOH . 
AA 7 HOH C 31 431 130 HOH HOH . 
AA 7 HOH C 32 432 131 HOH HOH . 
AA 7 HOH C 33 433 132 HOH HOH . 
AA 7 HOH C 34 434 133 HOH HOH . 
AA 7 HOH C 35 435 139 HOH HOH . 
AA 7 HOH C 36 436 140 HOH HOH . 
AA 7 HOH C 37 437 141 HOH HOH . 
AA 7 HOH C 38 438 143 HOH HOH . 
AA 7 HOH C 39 439 144 HOH HOH . 
AA 7 HOH C 40 440 147 HOH HOH . 
AA 7 HOH C 41 441 167 HOH HOH . 
AA 7 HOH C 42 442 168 HOH HOH . 
AA 7 HOH C 43 443 171 HOH HOH . 
AA 7 HOH C 44 444 172 HOH HOH . 
AA 7 HOH C 45 445 173 HOH HOH . 
BA 7 HOH D 1 401 1 HOH HOH . 
BA 7 HOH D 2 402 9 HOH HOH . 
BA 7 HOH D 3 403 13 HOH HOH . 
BA 7 HOH D 4 404 21 HOH HOH . 
BA 7 HOH D 5 405 25 HOH HOH . 
BA 7 HOH D 6 406 27 HOH HOH . 
BA 7 HOH D 7 407 32 HOH HOH . 
BA 7 HOH D 8 408 44 HOH HOH . 
BA 7 HOH D 9 409 45 HOH HOH . 
BA 7 HOH D 10 410 88 HOH HOH . 
BA 7 HOH D 11 411 89 HOH HOH . 
BA 7 HOH D 12 412 90 HOH HOH . 
BA 7 HOH D 13 413 91 HOH HOH . 
BA 7 HOH D 14 414 92 HOH HOH . 
BA 7 HOH D 15 415 94 HOH HOH . 
BA 7 HOH D 16 416 95 HOH HOH . 
BA 7 HOH D 17 417 96 HOH HOH . 
BA 7 HOH D 18 418 111 HOH HOH . 
BA 7 HOH D 19 419 112 HOH HOH . 
BA 7 HOH D 20 420 115 HOH HOH . 
BA 7 HOH D 21 421 134 HOH HOH . 
BA 7 HOH D 22 422 135 HOH HOH . 
BA 7 HOH D 23 423 136 HOH HOH . 
BA 7 HOH D 24 424 137 HOH HOH . 
BA 7 HOH D 25 425 138 HOH HOH . 
BA 7 HOH D 26 426 142 HOH HOH . 
BA 7 HOH D 27 427 145 HOH HOH . 
BA 7 HOH D 28 428 157 HOH HOH . 
BA 7 HOH D 29 429 170 HOH HOH . 
BA 7 HOH D 30 430 174 HOH HOH . 
BA 7 HOH D 31 431 175 HOH HOH . 
BA 7 HOH D 32 432 176 HOH HOH . 
CA 7 HOH E 1 401 14 HOH HOH . 
CA 7 HOH E 2 402 17 HOH HOH . 
CA 7 HOH E 3 403 31 HOH HOH . 
CA 7 HOH E 4 404 34 HOH HOH . 
CA 7 HOH E 5 405 37 HOH HOH . 
CA 7 HOH E 6 406 70 HOH HOH . 
CA 7 HOH E 7 407 79 HOH HOH . 
CA 7 HOH E 8 408 81 HOH HOH . 
CA 7 HOH E 9 409 93 HOH HOH . 
CA 7 HOH E 10 410 97 HOH HOH . 
CA 7 HOH E 11 411 98 HOH HOH . 
CA 7 HOH E 12 412 99 HOH HOH . 
CA 7 HOH E 13 413 100 HOH HOH . 
CA 7 HOH E 14 414 117 HOH HOH . 
CA 7 HOH E 15 415 146 HOH HOH . 
CA 7 HOH E 16 416 153 HOH HOH . 
CA 7 HOH E 17 417 154 HOH HOH . 
CA 7 HOH E 18 418 155 HOH HOH . 
CA 7 HOH E 19 419 156 HOH HOH . 
CA 7 HOH E 20 420 177 HOH HOH . 
CA 7 HOH E 21 421 178 HOH HOH . 
CA 7 HOH E 22 422 179 HOH HOH . 
CA 7 HOH E 23 423 180 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         P 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               74.559 
_atom_site.Cartn_y               -27.951 
_atom_site.Cartn_z               -10.631 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        146.94 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           304 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           648 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           1 
#