data_4DU8 # _model_server_result.job_id GTi6Ij_j2BnSsX059Pu23Q _model_server_result.datetime_utc '2024-12-05 06:56:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4du8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 4DU8 # _exptl.entry_id 4DU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DU8 _cell.length_a 82.966 _cell.length_b 102.05 _cell.length_c 155.143 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 4DU8 _atom_sites.fract_transf_matrix[1][1] 0.012053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2P0 A 1 401 1 2P0 DRG . D 3 GOL A 1 402 3968 GOL GOL . E 3 GOL A 1 403 3968 GOL GOL . F 3 GOL A 1 404 3968 GOL GOL . G 2 2P0 B 1 401 1 2P0 DRG . H 4 HOH A 1 501 2 HOH HOH . H 4 HOH A 2 502 3 HOH HOH . H 4 HOH A 3 503 5 HOH HOH . H 4 HOH A 4 504 6 HOH HOH . H 4 HOH A 5 505 8 HOH HOH . H 4 HOH A 6 506 9 HOH HOH . H 4 HOH A 7 507 12 HOH HOH . H 4 HOH A 8 508 17 HOH HOH . H 4 HOH A 9 509 18 HOH HOH . H 4 HOH A 10 510 19 HOH HOH . H 4 HOH A 11 511 21 HOH HOH . H 4 HOH A 12 512 24 HOH HOH . H 4 HOH A 13 513 26 HOH HOH . H 4 HOH A 14 514 29 HOH HOH . H 4 HOH A 15 515 30 HOH HOH . H 4 HOH A 16 516 31 HOH HOH . H 4 HOH A 17 517 32 HOH HOH . H 4 HOH A 18 518 33 HOH HOH . H 4 HOH A 19 519 36 HOH HOH . H 4 HOH A 20 520 37 HOH HOH . H 4 HOH A 21 521 38 HOH HOH . H 4 HOH A 22 522 41 HOH HOH . H 4 HOH A 23 523 42 HOH HOH . H 4 HOH A 24 524 43 HOH HOH . H 4 HOH A 25 525 44 HOH HOH . H 4 HOH A 26 526 45 HOH HOH . H 4 HOH A 27 527 46 HOH HOH . H 4 HOH A 28 528 49 HOH HOH . H 4 HOH A 29 529 50 HOH HOH . H 4 HOH A 30 530 53 HOH HOH . H 4 HOH A 31 531 54 HOH HOH . H 4 HOH A 32 532 55 HOH HOH . H 4 HOH A 33 533 56 HOH HOH . H 4 HOH A 34 534 59 HOH HOH . H 4 HOH A 35 535 60 HOH HOH . H 4 HOH A 36 536 61 HOH HOH . H 4 HOH A 37 537 63 HOH HOH . H 4 HOH A 38 538 64 HOH HOH . H 4 HOH A 39 539 68 HOH HOH . H 4 HOH A 40 540 71 HOH HOH . H 4 HOH A 41 541 72 HOH HOH . H 4 HOH A 42 542 73 HOH HOH . H 4 HOH A 43 543 76 HOH HOH . H 4 HOH A 44 544 78 HOH HOH . H 4 HOH A 45 545 79 HOH HOH . H 4 HOH A 46 546 82 HOH HOH . H 4 HOH A 47 547 83 HOH HOH . H 4 HOH A 48 548 84 HOH HOH . H 4 HOH A 49 549 92 HOH HOH . H 4 HOH A 50 550 96 HOH HOH . H 4 HOH A 51 551 98 HOH HOH . H 4 HOH A 52 552 99 HOH HOH . H 4 HOH A 53 553 101 HOH HOH . H 4 HOH A 54 554 102 HOH HOH . H 4 HOH A 55 555 103 HOH HOH . H 4 HOH A 56 556 104 HOH HOH . H 4 HOH A 57 557 105 HOH HOH . H 4 HOH A 58 558 106 HOH HOH . H 4 HOH A 59 559 107 HOH HOH . H 4 HOH A 60 560 108 HOH HOH . H 4 HOH A 61 561 110 HOH HOH . H 4 HOH A 62 562 111 HOH HOH . H 4 HOH A 63 563 112 HOH HOH . H 4 HOH A 64 564 114 HOH HOH . H 4 HOH A 65 565 115 HOH HOH . H 4 HOH A 66 566 116 HOH HOH . H 4 HOH A 67 567 118 HOH HOH . H 4 HOH A 68 568 119 HOH HOH . H 4 HOH A 69 569 122 HOH HOH . H 4 HOH A 70 570 124 HOH HOH . H 4 HOH A 71 571 125 HOH HOH . H 4 HOH A 72 572 126 HOH HOH . H 4 HOH A 73 573 128 HOH HOH . H 4 HOH A 74 574 129 HOH HOH . H 4 HOH A 75 575 132 HOH HOH . H 4 HOH A 76 576 133 HOH HOH . H 4 HOH A 77 577 139 HOH HOH . H 4 HOH A 78 578 140 HOH HOH . H 4 HOH A 79 579 143 HOH HOH . H 4 HOH A 80 580 147 HOH HOH . H 4 HOH A 81 581 148 HOH HOH . H 4 HOH A 82 582 149 HOH HOH . H 4 HOH A 83 583 151 HOH HOH . H 4 HOH A 84 584 153 HOH HOH . H 4 HOH A 85 585 154 HOH HOH . H 4 HOH A 86 586 155 HOH HOH . H 4 HOH A 87 587 158 HOH HOH . H 4 HOH A 88 588 159 HOH HOH . H 4 HOH A 89 589 160 HOH HOH . H 4 HOH A 90 590 170 HOH HOH . H 4 HOH A 91 591 172 HOH HOH . H 4 HOH A 92 592 173 HOH HOH . H 4 HOH A 93 593 176 HOH HOH . H 4 HOH A 94 594 177 HOH HOH . H 4 HOH A 95 595 178 HOH HOH . H 4 HOH A 96 596 179 HOH HOH . H 4 HOH A 97 597 181 HOH HOH . H 4 HOH A 98 598 182 HOH HOH . H 4 HOH A 99 599 185 HOH HOH . H 4 HOH A 100 600 191 HOH HOH . H 4 HOH A 101 601 192 HOH HOH . H 4 HOH A 102 602 200 HOH HOH . H 4 HOH A 103 603 204 HOH HOH . H 4 HOH A 104 604 205 HOH HOH . H 4 HOH A 105 605 206 HOH HOH . H 4 HOH A 106 606 208 HOH HOH . H 4 HOH A 107 607 210 HOH HOH . H 4 HOH A 108 608 211 HOH HOH . H 4 HOH A 109 609 212 HOH HOH . H 4 HOH A 110 610 214 HOH HOH . H 4 HOH A 111 611 215 HOH HOH . H 4 HOH A 112 612 216 HOH HOH . H 4 HOH A 113 613 217 HOH HOH . H 4 HOH A 114 614 220 HOH HOH . H 4 HOH A 115 615 221 HOH HOH . H 4 HOH A 116 616 222 HOH HOH . H 4 HOH A 117 617 224 HOH HOH . H 4 HOH A 118 618 227 HOH HOH . H 4 HOH A 119 619 229 HOH HOH . H 4 HOH A 120 620 232 HOH HOH . H 4 HOH A 121 621 233 HOH HOH . H 4 HOH A 122 622 234 HOH HOH . H 4 HOH A 123 623 236 HOH HOH . H 4 HOH A 124 624 237 HOH HOH . H 4 HOH A 125 625 239 HOH HOH . H 4 HOH A 126 626 240 HOH HOH . H 4 HOH A 127 627 241 HOH HOH . H 4 HOH A 128 628 243 HOH HOH . H 4 HOH A 129 629 246 HOH HOH . H 4 HOH A 130 630 247 HOH HOH . H 4 HOH A 131 631 248 HOH HOH . H 4 HOH A 132 632 252 HOH HOH . H 4 HOH A 133 633 255 HOH HOH . H 4 HOH A 134 634 257 HOH HOH . H 4 HOH A 135 635 258 HOH HOH . H 4 HOH A 136 636 259 HOH HOH . H 4 HOH A 137 637 262 HOH HOH . H 4 HOH A 138 638 265 HOH HOH . H 4 HOH A 139 639 266 HOH HOH . H 4 HOH A 140 640 269 HOH HOH . H 4 HOH A 141 641 272 HOH HOH . H 4 HOH A 142 642 275 HOH HOH . I 4 HOH B 1 501 260 HOH HOH . I 4 HOH B 2 502 1 HOH HOH . I 4 HOH B 3 503 4 HOH HOH . I 4 HOH B 4 504 7 HOH HOH . I 4 HOH B 5 505 10 HOH HOH . I 4 HOH B 6 506 11 HOH HOH . I 4 HOH B 7 507 13 HOH HOH . I 4 HOH B 8 508 14 HOH HOH . I 4 HOH B 9 509 15 HOH HOH . I 4 HOH B 10 510 16 HOH HOH . I 4 HOH B 11 511 20 HOH HOH . I 4 HOH B 12 512 22 HOH HOH . I 4 HOH B 13 513 23 HOH HOH . I 4 HOH B 14 514 25 HOH HOH . I 4 HOH B 15 515 27 HOH HOH . I 4 HOH B 16 516 28 HOH HOH . I 4 HOH B 17 517 34 HOH HOH . I 4 HOH B 18 518 35 HOH HOH . I 4 HOH B 19 519 39 HOH HOH . I 4 HOH B 20 520 40 HOH HOH . I 4 HOH B 21 521 47 HOH HOH . I 4 HOH B 22 522 48 HOH HOH . I 4 HOH B 23 523 51 HOH HOH . I 4 HOH B 24 524 52 HOH HOH . I 4 HOH B 25 525 57 HOH HOH . I 4 HOH B 26 526 58 HOH HOH . I 4 HOH B 27 527 62 HOH HOH . I 4 HOH B 28 528 65 HOH HOH . I 4 HOH B 29 529 66 HOH HOH . I 4 HOH B 30 530 67 HOH HOH . I 4 HOH B 31 531 69 HOH HOH . I 4 HOH B 32 532 70 HOH HOH . I 4 HOH B 33 533 74 HOH HOH . I 4 HOH B 34 534 75 HOH HOH . I 4 HOH B 35 535 77 HOH HOH . I 4 HOH B 36 536 80 HOH HOH . I 4 HOH B 37 537 81 HOH HOH . I 4 HOH B 38 538 85 HOH HOH . I 4 HOH B 39 539 86 HOH HOH . I 4 HOH B 40 540 87 HOH HOH . I 4 HOH B 41 541 88 HOH HOH . I 4 HOH B 42 542 89 HOH HOH . I 4 HOH B 43 543 90 HOH HOH . I 4 HOH B 44 544 91 HOH HOH . I 4 HOH B 45 545 93 HOH HOH . I 4 HOH B 46 546 94 HOH HOH . I 4 HOH B 47 547 95 HOH HOH . I 4 HOH B 48 548 97 HOH HOH . I 4 HOH B 49 549 100 HOH HOH . I 4 HOH B 50 550 109 HOH HOH . I 4 HOH B 51 551 113 HOH HOH . I 4 HOH B 52 552 117 HOH HOH . I 4 HOH B 53 553 120 HOH HOH . I 4 HOH B 54 554 121 HOH HOH . I 4 HOH B 55 555 123 HOH HOH . I 4 HOH B 56 556 127 HOH HOH . I 4 HOH B 57 557 130 HOH HOH . I 4 HOH B 58 558 131 HOH HOH . I 4 HOH B 59 559 134 HOH HOH . I 4 HOH B 60 560 135 HOH HOH . I 4 HOH B 61 561 136 HOH HOH . I 4 HOH B 62 562 137 HOH HOH . I 4 HOH B 63 563 138 HOH HOH . I 4 HOH B 64 564 141 HOH HOH . I 4 HOH B 65 565 142 HOH HOH . I 4 HOH B 66 566 144 HOH HOH . I 4 HOH B 67 567 145 HOH HOH . I 4 HOH B 68 568 146 HOH HOH . I 4 HOH B 69 569 150 HOH HOH . I 4 HOH B 70 570 152 HOH HOH . I 4 HOH B 71 571 156 HOH HOH . I 4 HOH B 72 572 157 HOH HOH . I 4 HOH B 73 573 161 HOH HOH . I 4 HOH B 74 574 162 HOH HOH . I 4 HOH B 75 575 163 HOH HOH . I 4 HOH B 76 576 164 HOH HOH . I 4 HOH B 77 577 165 HOH HOH . I 4 HOH B 78 578 166 HOH HOH . I 4 HOH B 79 579 167 HOH HOH . I 4 HOH B 80 580 168 HOH HOH . I 4 HOH B 81 581 169 HOH HOH . I 4 HOH B 82 582 171 HOH HOH . I 4 HOH B 83 583 174 HOH HOH . I 4 HOH B 84 584 175 HOH HOH . I 4 HOH B 85 585 180 HOH HOH . I 4 HOH B 86 586 183 HOH HOH . I 4 HOH B 87 587 184 HOH HOH . I 4 HOH B 88 588 186 HOH HOH . I 4 HOH B 89 589 187 HOH HOH . I 4 HOH B 90 590 188 HOH HOH . I 4 HOH B 91 591 189 HOH HOH . I 4 HOH B 92 592 190 HOH HOH . I 4 HOH B 93 593 193 HOH HOH . I 4 HOH B 94 594 194 HOH HOH . I 4 HOH B 95 595 195 HOH HOH . I 4 HOH B 96 596 196 HOH HOH . I 4 HOH B 97 597 197 HOH HOH . I 4 HOH B 98 598 198 HOH HOH . I 4 HOH B 99 599 199 HOH HOH . I 4 HOH B 100 600 201 HOH HOH . I 4 HOH B 101 601 202 HOH HOH . I 4 HOH B 102 602 203 HOH HOH . I 4 HOH B 103 603 207 HOH HOH . I 4 HOH B 104 604 209 HOH HOH . I 4 HOH B 105 605 213 HOH HOH . I 4 HOH B 106 606 218 HOH HOH . I 4 HOH B 107 607 219 HOH HOH . I 4 HOH B 108 608 223 HOH HOH . I 4 HOH B 109 609 225 HOH HOH . I 4 HOH B 110 610 226 HOH HOH . I 4 HOH B 111 611 228 HOH HOH . I 4 HOH B 112 612 230 HOH HOH . I 4 HOH B 113 613 231 HOH HOH . I 4 HOH B 114 614 235 HOH HOH . I 4 HOH B 115 615 238 HOH HOH . I 4 HOH B 116 616 242 HOH HOH . I 4 HOH B 117 617 244 HOH HOH . I 4 HOH B 118 618 245 HOH HOH . I 4 HOH B 119 619 249 HOH HOH . I 4 HOH B 120 620 250 HOH HOH . I 4 HOH B 121 621 251 HOH HOH . I 4 HOH B 122 622 253 HOH HOH . I 4 HOH B 123 623 254 HOH HOH . I 4 HOH B 124 624 256 HOH HOH . I 4 HOH B 125 625 261 HOH HOH . I 4 HOH B 126 626 263 HOH HOH . I 4 HOH B 127 627 264 HOH HOH . I 4 HOH B 128 628 267 HOH HOH . I 4 HOH B 129 629 268 HOH HOH . I 4 HOH B 130 630 270 HOH HOH . I 4 HOH B 131 631 271 HOH HOH . I 4 HOH B 132 632 273 HOH HOH . I 4 HOH B 133 633 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 50.67 15.983 31.999 0.9 40.6 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . F 3 51.986 16.064 32.504 0.9 39.98 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . F 3 49.817 17.204 32.331 0.9 42.85 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . F 3 50.646 18.287 32.688 0.9 46.2 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . F 3 48.963 17.566 31.116 0.9 37.47 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . F 3 48.16 18.693 31.403 0.9 43.32 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #