data_4DUS # _model_server_result.job_id 4eJqx18utRkJmRmXDNwdvw _model_server_result.datetime_utc '2024-11-08 19:20:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":410}' # _entry.id 4DUS # _exptl.entry_id 4DUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.618 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-((2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-((6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl)amino)butan-2-yl)acetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DUS _cell.length_a 102.309 _cell.length_b 102.309 _cell.length_c 169.758 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C28 H38 F N3 O3' _chem_comp.formula_weight 483.618 _chem_comp.id 0MP _chem_comp.mon_nstd_flag . _chem_comp.name "N-((2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-((6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl)amino)butan-2-yl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 0MP doub 1 n y C20 C19 0MP sing 2 n y C21 C22 0MP sing 3 n y C31 C19 0MP sing 4 n n C31 C25 0MP sing 5 n n N27 C25 0MP sing 6 n n N27 C33 0MP sing 7 n n C26 O30 0MP sing 8 n n C26 C25 0MP sing 9 n n C26 C28 0MP sing 10 n n C19 C24 0MP doub 11 n y C35 C33 0MP sing 12 n n N29 C28 0MP sing 13 n n N29 C11 0MP sing 14 n n C22 F32 0MP sing 15 n n C22 C23 0MP doub 16 n y C33 O34 0MP doub 17 n n C13 C11 0MP sing 18 n n C13 C1 0MP sing 19 n n C11 C6 0MP sing 20 n n C24 C23 0MP sing 21 n y C3 C4 0MP sing 22 n n C3 C2 0MP sing 23 n n C4 C1 0MP sing 24 n n C1 C2 0MP sing 25 n n C1 O12 0MP sing 26 n n C6 C7 0MP doub 27 n y C6 C5 0MP sing 28 n y C7 C8 0MP sing 29 n y O12 C5 0MP sing 30 n n C5 N10 0MP doub 31 n y C18 C15 0MP sing 32 n n C8 C14 0MP sing 33 n n C8 C9 0MP doub 34 n y C14 C15 0MP sing 35 n n N10 C9 0MP sing 36 n y C15 C16 0MP sing 37 n n C15 C17 0MP sing 38 n n C2 H1 0MP sing 39 n n C2 H2 0MP sing 40 n n C3 H3 0MP sing 41 n n C3 H4 0MP sing 42 n n C4 H5 0MP sing 43 n n C4 H6 0MP sing 44 n n C13 H7 0MP sing 45 n n C13 H8 0MP sing 46 n n C9 H9 0MP sing 47 n n C14 H10 0MP sing 48 n n C14 H11 0MP sing 49 n n C17 H12 0MP sing 50 n n C17 H13 0MP sing 51 n n C17 H14 0MP sing 52 n n C18 H15 0MP sing 53 n n C18 H16 0MP sing 54 n n C18 H17 0MP sing 55 n n C16 H18 0MP sing 56 n n C16 H19 0MP sing 57 n n C16 H20 0MP sing 58 n n C7 H21 0MP sing 59 n n C11 H22 0MP sing 60 n n N29 H23 0MP sing 61 n n C28 H25 0MP sing 62 n n C28 H26 0MP sing 63 n n C26 H27 0MP sing 64 n n O30 H28 0MP sing 65 n n C25 H29 0MP sing 66 n n N27 H30 0MP sing 67 n n C35 H31 0MP sing 68 n n C35 H32 0MP sing 69 n n C35 H33 0MP sing 70 n n C31 H34 0MP sing 71 n n C31 H35 0MP sing 72 n n C20 H36 0MP sing 73 n n C21 H37 0MP sing 74 n n C23 H38 0MP sing 75 n n C24 H39 0MP sing 76 n n # _atom_sites.entry_id 4DUS _atom_sites.fract_transf_matrix[1][1] 0.009774 _atom_sites.fract_transf_matrix[1][2] 0.005643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 401 440 IOD IOD . C 2 IOD A 1 402 441 IOD IOD . D 2 IOD A 1 403 442 IOD IOD . E 2 IOD A 1 404 443 IOD IOD . F 2 IOD A 1 405 444 IOD IOD . G 2 IOD A 1 406 445 IOD IOD . H 2 IOD A 1 407 446 IOD IOD . I 3 GOL A 1 408 1 GOL GOL . J 3 GOL A 1 409 2 GOL GOL . K 4 0MP A 1 410 1 0MP 0MP . L 5 HOH A 1 501 1 HOH HOH . L 5 HOH A 2 502 2 HOH HOH . L 5 HOH A 3 503 3 HOH HOH . L 5 HOH A 4 504 4 HOH HOH . L 5 HOH A 5 505 5 HOH HOH . L 5 HOH A 6 506 6 HOH HOH . L 5 HOH A 7 507 7 HOH HOH . L 5 HOH A 8 508 8 HOH HOH . L 5 HOH A 9 509 9 HOH HOH . L 5 HOH A 10 510 10 HOH HOH . L 5 HOH A 11 511 11 HOH HOH . L 5 HOH A 12 512 12 HOH HOH . L 5 HOH A 13 513 13 HOH HOH . L 5 HOH A 14 514 14 HOH HOH . L 5 HOH A 15 515 15 HOH HOH . L 5 HOH A 16 516 16 HOH HOH . L 5 HOH A 17 517 17 HOH HOH . L 5 HOH A 18 518 18 HOH HOH . L 5 HOH A 19 519 19 HOH HOH . L 5 HOH A 20 520 20 HOH HOH . L 5 HOH A 21 521 21 HOH HOH . L 5 HOH A 22 522 22 HOH HOH . L 5 HOH A 23 523 23 HOH HOH . L 5 HOH A 24 524 24 HOH HOH . L 5 HOH A 25 525 25 HOH HOH . L 5 HOH A 26 526 26 HOH HOH . L 5 HOH A 27 527 27 HOH HOH . L 5 HOH A 28 528 28 HOH HOH . L 5 HOH A 29 529 29 HOH HOH . L 5 HOH A 30 530 30 HOH HOH . L 5 HOH A 31 531 31 HOH HOH . L 5 HOH A 32 532 32 HOH HOH . L 5 HOH A 33 533 33 HOH HOH . L 5 HOH A 34 534 34 HOH HOH . L 5 HOH A 35 535 35 HOH HOH . L 5 HOH A 36 536 36 HOH HOH . L 5 HOH A 37 537 37 HOH HOH . L 5 HOH A 38 538 38 HOH HOH . L 5 HOH A 39 539 39 HOH HOH . L 5 HOH A 40 540 40 HOH HOH . L 5 HOH A 41 541 41 HOH HOH . L 5 HOH A 42 542 43 HOH HOH . L 5 HOH A 43 543 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 0MP . . . K 4 61.059 45.409 9.381 1 30.56 ? C2 0MP 410 A 1 HETATM 2 C C3 0MP . . . K 4 60.77 43.941 9.045 1 29.56 ? C3 0MP 410 A 1 HETATM 3 C C4 0MP . . . K 4 62.268 43.611 9.104 1 28.58 ? C4 0MP 410 A 1 HETATM 4 C C1 0MP . . . K 4 62.571 45.105 9.331 1 31.09 ? C1 0MP 410 A 1 HETATM 5 C C13 0MP . . . K 4 63.301 45.728 8.124 1 28.52 ? C13 0MP 410 A 1 HETATM 6 O O12 0MP . . . K 4 63.243 45.371 10.561 1 31.1 ? O12 0MP 410 A 1 HETATM 7 C C5 0MP . . . K 4 63.468 46.702 10.815 1 33.57 ? C5 0MP 410 A 1 HETATM 8 N N10 0MP . . . K 4 63.62 47.076 12.105 1 36.72 ? N10 0MP 410 A 1 HETATM 9 C C9 0MP . . . K 4 63.859 48.338 12.447 1 35.7 ? C9 0MP 410 A 1 HETATM 10 C C8 0MP . . . K 4 63.954 49.328 11.467 1 33.07 ? C8 0MP 410 A 1 HETATM 11 C C14 0MP . . . K 4 64.225 50.773 11.88 1 29.54 ? C14 0MP 410 A 1 HETATM 12 C C15 0MP . . . K 4 62.974 51.532 12.3 1 31.61 ? C15 0MP 410 A 1 HETATM 13 C C17 0MP . . . K 4 62.202 50.688 13.315 1 30.44 ? C17 0MP 410 A 1 HETATM 14 C C18 0MP . . . K 4 62.081 51.876 11.09 1 28.61 ? C18 0MP 410 A 1 HETATM 15 C C16 0MP . . . K 4 63.421 52.847 12.956 1 28.55 ? C16 0MP 410 A 1 HETATM 16 C C7 0MP . . . K 4 63.806 48.985 10.116 1 29.9 ? C7 0MP 410 A 1 HETATM 17 C C6 0MP . . . K 4 63.57 47.655 9.786 1 30.63 ? C6 0MP 410 A 1 HETATM 18 C C11 0MP . . . K 4 63.391 47.252 8.306 1 30.26 ? C11 0MP 410 A 1 HETATM 19 N N29 0MP . . . K 4 64.446 47.808 7.44 1 28.38 ? N29 0MP 410 A 1 HETATM 20 C C28 0MP . . . K 4 65.828 47.44 7.799 1 27.18 ? C28 0MP 410 A 1 HETATM 21 C C26 0MP . . . K 4 66.761 48.48 7.157 1 27.28 ? C26 0MP 410 A 1 HETATM 22 O O30 0MP . . . K 4 66.308 49.798 7.478 1 27.81 ? O30 0MP 410 A 1 HETATM 23 C C25 0MP . . . K 4 68.204 48.323 7.624 1 25.5 ? C25 0MP 410 A 1 HETATM 24 N N27 0MP . . . K 4 68.753 47.033 7.157 1 23.87 ? N27 0MP 410 A 1 HETATM 25 C C33 0MP . . . K 4 68.889 46.015 8.005 1 25.11 ? C33 0MP 410 A 1 HETATM 26 C C35 0MP . . . K 4 69.443 44.715 7.403 1 24.85 ? C35 0MP 410 A 1 HETATM 27 O O34 0MP . . . K 4 68.564 46.078 9.19 1 25.17 ? O34 0MP 410 A 1 HETATM 28 C C31 0MP . . . K 4 69.062 49.503 7.141 1 24.91 ? C31 0MP 410 A 1 HETATM 29 C C19 0MP . . . K 4 70.552 49.22 7.359 1 23.55 ? C19 0MP 410 A 1 HETATM 30 C C20 0MP . . . K 4 71.397 49.044 6.277 1 22.99 ? C20 0MP 410 A 1 HETATM 31 C C21 0MP . . . K 4 72.741 48.772 6.502 1 24.95 ? C21 0MP 410 A 1 HETATM 32 C C22 0MP . . . K 4 73.228 48.687 7.803 1 25.43 ? C22 0MP 410 A 1 HETATM 33 F F32 0MP . . . K 4 74.529 48.434 8.034 1 29.96 ? F32 0MP 410 A 1 HETATM 34 C C23 0MP . . . K 4 72.383 48.849 8.88 1 24.16 ? C23 0MP 410 A 1 HETATM 35 C C24 0MP . . . K 4 71.04 49.113 8.648 1 23.68 ? C24 0MP 410 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #