data_4DVA
#
_model_server_result.job_id            KqR9sfujiBYgvJhvMCPttg 
_model_server_result.datetime_utc      '2024-11-24 10:30:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dva 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4DVA 
#
_exptl.entry_id    4DVA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DVA 
_cell.length_a            121.281 
_cell.length_b            121.281 
_cell.length_c            42.806 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DVA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 334 n n 
S O2 SO4 doub 335 n n 
S O3 SO4 sing 336 n n 
S O4 SO4 sing 337 n n 
#
_atom_sites.entry_id                     4DVA 
_atom_sites.fract_transf_matrix[1][1]    0.008245 
_atom_sites.fract_transf_matrix[1][2]    0.00476 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009521 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023361 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 U 1 301 1 SO4 SO4 . 
C 2 SO4 U 1 302 2 SO4 SO4 . 
D 3 P6G U 1 303 5115 P6G PG6 . 
E 3 P6G U 1 304 5116 P6G PG6 . 
F 4 HOH U 1 401 1 HOH HOH . 
F 4 HOH U 2 402 2 HOH HOH . 
F 4 HOH U 3 403 3 HOH HOH . 
F 4 HOH U 4 404 4 HOH HOH . 
F 4 HOH U 5 405 5 HOH HOH . 
F 4 HOH U 6 406 6 HOH HOH . 
F 4 HOH U 7 407 7 HOH HOH . 
F 4 HOH U 8 408 8 HOH HOH . 
F 4 HOH U 9 409 9 HOH HOH . 
F 4 HOH U 10 410 10 HOH HOH . 
F 4 HOH U 11 411 11 HOH HOH . 
F 4 HOH U 12 412 12 HOH HOH . 
F 4 HOH U 13 413 13 HOH HOH . 
F 4 HOH U 14 414 14 HOH HOH . 
F 4 HOH U 15 415 15 HOH HOH . 
F 4 HOH U 16 416 16 HOH HOH . 
F 4 HOH U 17 417 17 HOH HOH . 
F 4 HOH U 18 418 18 HOH HOH . 
F 4 HOH U 19 419 19 HOH HOH . 
F 4 HOH U 20 420 20 HOH HOH . 
F 4 HOH U 21 421 21 HOH HOH . 
F 4 HOH U 22 422 22 HOH HOH . 
F 4 HOH U 23 423 23 HOH HOH . 
F 4 HOH U 24 424 24 HOH HOH . 
F 4 HOH U 25 425 25 HOH HOH . 
F 4 HOH U 26 426 26 HOH HOH . 
F 4 HOH U 27 427 27 HOH HOH . 
F 4 HOH U 28 428 28 HOH HOH . 
F 4 HOH U 29 429 29 HOH HOH . 
F 4 HOH U 30 430 30 HOH HOH . 
F 4 HOH U 31 431 31 HOH HOH . 
F 4 HOH U 32 432 32 HOH HOH . 
F 4 HOH U 33 433 33 HOH HOH . 
F 4 HOH U 34 434 34 HOH HOH . 
F 4 HOH U 35 435 35 HOH HOH . 
F 4 HOH U 36 436 36 HOH HOH . 
F 4 HOH U 37 437 37 HOH HOH . 
F 4 HOH U 38 438 38 HOH HOH . 
F 4 HOH U 39 439 39 HOH HOH . 
F 4 HOH U 40 440 40 HOH HOH . 
F 4 HOH U 41 441 41 HOH HOH . 
F 4 HOH U 42 442 42 HOH HOH . 
F 4 HOH U 43 443 43 HOH HOH . 
F 4 HOH U 44 444 44 HOH HOH . 
F 4 HOH U 45 445 45 HOH HOH . 
F 4 HOH U 46 446 46 HOH HOH . 
F 4 HOH U 47 447 47 HOH HOH . 
F 4 HOH U 48 448 48 HOH HOH . 
F 4 HOH U 49 449 49 HOH HOH . 
F 4 HOH U 50 450 50 HOH HOH . 
F 4 HOH U 51 451 51 HOH HOH . 
F 4 HOH U 52 452 52 HOH HOH . 
F 4 HOH U 53 453 53 HOH HOH . 
F 4 HOH U 54 454 54 HOH HOH . 
F 4 HOH U 55 455 55 HOH HOH . 
F 4 HOH U 56 456 56 HOH HOH . 
F 4 HOH U 57 457 57 HOH HOH . 
F 4 HOH U 58 458 58 HOH HOH . 
F 4 HOH U 59 459 59 HOH HOH . 
F 4 HOH U 60 460 60 HOH HOH . 
F 4 HOH U 61 461 61 HOH HOH . 
F 4 HOH U 62 462 62 HOH HOH . 
F 4 HOH U 63 463 63 HOH HOH . 
F 4 HOH U 64 464 64 HOH HOH . 
F 4 HOH U 65 465 65 HOH HOH . 
F 4 HOH U 66 466 66 HOH HOH . 
F 4 HOH U 67 467 67 HOH HOH . 
F 4 HOH U 68 468 68 HOH HOH . 
F 4 HOH U 69 469 69 HOH HOH . 
F 4 HOH U 70 470 70 HOH HOH . 
F 4 HOH U 71 471 71 HOH HOH . 
F 4 HOH U 72 472 72 HOH HOH . 
F 4 HOH U 73 473 73 HOH HOH . 
F 4 HOH U 74 474 74 HOH HOH . 
F 4 HOH U 75 475 76 HOH HOH . 
F 4 HOH U 76 476 77 HOH HOH . 
F 4 HOH U 77 477 78 HOH HOH . 
F 4 HOH U 78 478 79 HOH HOH . 
F 4 HOH U 79 479 80 HOH HOH . 
F 4 HOH U 80 480 81 HOH HOH . 
F 4 HOH U 81 481 82 HOH HOH . 
F 4 HOH U 82 482 83 HOH HOH . 
F 4 HOH U 83 483 84 HOH HOH . 
F 4 HOH U 84 484 85 HOH HOH . 
F 4 HOH U 85 485 86 HOH HOH . 
F 4 HOH U 86 486 87 HOH HOH . 
F 4 HOH U 87 487 88 HOH HOH . 
F 4 HOH U 88 488 89 HOH HOH . 
F 4 HOH U 89 489 90 HOH HOH . 
F 4 HOH U 90 490 91 HOH HOH . 
F 4 HOH U 91 491 92 HOH HOH . 
F 4 HOH U 92 492 93 HOH HOH . 
F 4 HOH U 93 493 94 HOH HOH . 
F 4 HOH U 94 494 95 HOH HOH . 
F 4 HOH U 95 495 96 HOH HOH . 
F 4 HOH U 96 496 97 HOH HOH . 
F 4 HOH U 97 497 98 HOH HOH . 
F 4 HOH U 98 498 99 HOH HOH . 
F 4 HOH U 99 499 100 HOH HOH . 
F 4 HOH U 100 500 101 HOH HOH . 
F 4 HOH U 101 501 102 HOH HOH . 
F 4 HOH U 102 502 103 HOH HOH . 
F 4 HOH U 103 503 104 HOH HOH . 
F 4 HOH U 104 504 105 HOH HOH . 
F 4 HOH U 105 505 106 HOH HOH . 
F 4 HOH U 106 506 107 HOH HOH . 
F 4 HOH U 107 507 108 HOH HOH . 
F 4 HOH U 108 508 109 HOH HOH . 
F 4 HOH U 109 509 110 HOH HOH . 
F 4 HOH U 110 510 111 HOH HOH . 
F 4 HOH U 111 511 112 HOH HOH . 
F 4 HOH U 112 512 113 HOH HOH . 
F 4 HOH U 113 513 114 HOH HOH . 
F 4 HOH U 114 514 115 HOH HOH . 
F 4 HOH U 115 515 116 HOH HOH . 
F 4 HOH U 116 516 117 HOH HOH . 
F 4 HOH U 117 517 118 HOH HOH . 
F 4 HOH U 118 518 119 HOH HOH . 
F 4 HOH U 119 519 120 HOH HOH . 
F 4 HOH U 120 520 121 HOH HOH . 
F 4 HOH U 121 521 122 HOH HOH . 
F 4 HOH U 122 522 123 HOH HOH . 
F 4 HOH U 123 523 124 HOH HOH . 
F 4 HOH U 124 524 125 HOH HOH . 
F 4 HOH U 125 525 126 HOH HOH . 
F 4 HOH U 126 526 127 HOH HOH . 
F 4 HOH U 127 527 128 HOH HOH . 
F 4 HOH U 128 528 129 HOH HOH . 
F 4 HOH U 129 529 130 HOH HOH . 
F 4 HOH U 130 530 131 HOH HOH . 
F 4 HOH U 131 531 132 HOH HOH . 
F 4 HOH U 132 532 133 HOH HOH . 
F 4 HOH U 133 533 134 HOH HOH . 
F 4 HOH U 134 534 135 HOH HOH . 
F 4 HOH U 135 535 136 HOH HOH . 
F 4 HOH U 136 536 137 HOH HOH . 
F 4 HOH U 137 537 138 HOH HOH . 
F 4 HOH U 138 538 139 HOH HOH . 
F 4 HOH U 139 539 140 HOH HOH . 
F 4 HOH U 140 540 141 HOH HOH . 
F 4 HOH U 141 541 142 HOH HOH . 
F 4 HOH U 142 542 143 HOH HOH . 
F 4 HOH U 143 543 144 HOH HOH . 
F 4 HOH U 144 544 145 HOH HOH . 
F 4 HOH U 145 545 146 HOH HOH . 
F 4 HOH U 146 546 147 HOH HOH . 
F 4 HOH U 147 547 148 HOH HOH . 
F 4 HOH U 148 548 149 HOH HOH . 
F 4 HOH U 149 549 150 HOH HOH . 
F 4 HOH U 150 550 151 HOH HOH . 
F 4 HOH U 151 551 152 HOH HOH . 
F 4 HOH U 152 552 153 HOH HOH . 
F 4 HOH U 153 553 154 HOH HOH . 
F 4 HOH U 154 554 155 HOH HOH . 
F 4 HOH U 155 555 156 HOH HOH . 
F 4 HOH U 156 556 157 HOH HOH . 
F 4 HOH U 157 557 158 HOH HOH . 
F 4 HOH U 158 558 159 HOH HOH . 
F 4 HOH U 159 559 160 HOH HOH . 
F 4 HOH U 160 560 161 HOH HOH . 
F 4 HOH U 161 561 162 HOH HOH . 
F 4 HOH U 162 562 163 HOH HOH . 
F 4 HOH U 163 563 164 HOH HOH . 
F 4 HOH U 164 564 165 HOH HOH . 
F 4 HOH U 165 565 166 HOH HOH . 
F 4 HOH U 166 566 167 HOH HOH . 
F 4 HOH U 167 567 168 HOH HOH . 
F 4 HOH U 168 568 169 HOH HOH . 
F 4 HOH U 169 569 170 HOH HOH . 
F 4 HOH U 170 570 171 HOH HOH . 
F 4 HOH U 171 571 172 HOH HOH . 
F 4 HOH U 172 572 173 HOH HOH . 
F 4 HOH U 173 573 174 HOH HOH . 
F 4 HOH U 174 574 175 HOH HOH . 
F 4 HOH U 175 575 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . B 2 -24.467 -15.254 -4.712 1 26.82 ? S SO4 301 U 1 
HETATM 2 O O1 SO4 . . . B 2 -25.266 -16.386 -5.236 1 26 ? O1 SO4 301 U 1 
HETATM 3 O O2 SO4 . . . B 2 -24.717 -14.04 -5.523 1 27.01 ? O2 SO4 301 U 1 
HETATM 4 O O3 SO4 . . . B 2 -23.026 -15.591 -4.787 1 27.71 ? O3 SO4 301 U 1 
HETATM 5 O O4 SO4 . . . B 2 -24.821 -15.019 -3.299 1 26.96 ? O4 SO4 301 U 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           1008 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#