data_4DVH # _model_server_result.job_id 48M0s3pMCZPW6FxIjtjpAA _model_server_result.datetime_utc '2025-08-31 07:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4DVH # _exptl.entry_id 4DVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.81 _cell.angle_gamma 90 _cell.entry_id 4DVH _cell.length_a 47.17 _cell.length_b 74.55 _cell.length_c 56.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 34 A HIS 28 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc2 A NE2 HIS 85 A HIS 79 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 A OD2 ASP 169 A ASP 163 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc4 A NE2 HIS 173 A HIS 167 1_555 C FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc5 C FE FE . A FE 301 1_555 E O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 B NE2 HIS 34 B HIS 28 1_555 D FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc7 B NE2 HIS 85 B HIS 79 1_555 D FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 B OD2 ASP 169 B ASP 163 1_555 D FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 B NE2 HIS 173 B HIS 167 1_555 D FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc10 D FE FE . B FE 301 1_555 F O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DVH _atom_sites.fract_transf_matrix[1][1] 0.0212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002532 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 301 1 FE FE . D 2 FE B 1 301 2 FE FE . E 3 HOH A 1 401 5 HOH HOH . E 3 HOH A 2 402 7 HOH HOH . E 3 HOH A 3 403 8 HOH HOH . E 3 HOH A 4 404 11 HOH HOH . E 3 HOH A 5 405 14 HOH HOH . E 3 HOH A 6 406 15 HOH HOH . E 3 HOH A 7 407 17 HOH HOH . E 3 HOH A 8 408 21 HOH HOH . E 3 HOH A 9 409 22 HOH HOH . E 3 HOH A 10 410 23 HOH HOH . E 3 HOH A 11 411 24 HOH HOH . E 3 HOH A 12 412 25 HOH HOH . E 3 HOH A 13 413 26 HOH HOH . E 3 HOH A 14 414 28 HOH HOH . E 3 HOH A 15 415 32 HOH HOH . E 3 HOH A 16 416 33 HOH HOH . E 3 HOH A 17 417 35 HOH HOH . E 3 HOH A 18 418 36 HOH HOH . E 3 HOH A 19 419 38 HOH HOH . E 3 HOH A 20 420 39 HOH HOH . E 3 HOH A 21 421 40 HOH HOH . E 3 HOH A 22 422 41 HOH HOH . E 3 HOH A 23 423 43 HOH HOH . E 3 HOH A 24 424 45 HOH HOH . E 3 HOH A 25 425 46 HOH HOH . E 3 HOH A 26 426 47 HOH HOH . E 3 HOH A 27 427 48 HOH HOH . E 3 HOH A 28 428 49 HOH HOH . E 3 HOH A 29 429 50 HOH HOH . E 3 HOH A 30 430 57 HOH HOH . E 3 HOH A 31 431 58 HOH HOH . E 3 HOH A 32 432 59 HOH HOH . E 3 HOH A 33 433 60 HOH HOH . E 3 HOH A 34 434 63 HOH HOH . E 3 HOH A 35 435 65 HOH HOH . E 3 HOH A 36 436 67 HOH HOH . E 3 HOH A 37 437 68 HOH HOH . E 3 HOH A 38 438 69 HOH HOH . E 3 HOH A 39 439 71 HOH HOH . E 3 HOH A 40 440 72 HOH HOH . E 3 HOH A 41 441 73 HOH HOH . E 3 HOH A 42 442 75 HOH HOH . E 3 HOH A 43 443 81 HOH HOH . E 3 HOH A 44 444 84 HOH HOH . E 3 HOH A 45 445 85 HOH HOH . E 3 HOH A 46 446 87 HOH HOH . E 3 HOH A 47 447 89 HOH HOH . E 3 HOH A 48 448 90 HOH HOH . E 3 HOH A 49 449 92 HOH HOH . E 3 HOH A 50 450 93 HOH HOH . E 3 HOH A 51 451 96 HOH HOH . E 3 HOH A 52 452 97 HOH HOH . E 3 HOH A 53 453 98 HOH HOH . E 3 HOH A 54 454 101 HOH HOH . E 3 HOH A 55 455 102 HOH HOH . F 3 HOH B 1 401 1 HOH HOH . F 3 HOH B 2 402 2 HOH HOH . F 3 HOH B 3 403 3 HOH HOH . F 3 HOH B 4 404 4 HOH HOH . F 3 HOH B 5 405 6 HOH HOH . F 3 HOH B 6 406 9 HOH HOH . F 3 HOH B 7 407 10 HOH HOH . F 3 HOH B 8 408 12 HOH HOH . F 3 HOH B 9 409 13 HOH HOH . F 3 HOH B 10 410 16 HOH HOH . F 3 HOH B 11 411 18 HOH HOH . F 3 HOH B 12 412 19 HOH HOH . F 3 HOH B 13 413 20 HOH HOH . F 3 HOH B 14 414 27 HOH HOH . F 3 HOH B 15 415 29 HOH HOH . F 3 HOH B 16 416 30 HOH HOH . F 3 HOH B 17 417 31 HOH HOH . F 3 HOH B 18 418 34 HOH HOH . F 3 HOH B 19 419 37 HOH HOH . F 3 HOH B 20 420 42 HOH HOH . F 3 HOH B 21 421 44 HOH HOH . F 3 HOH B 22 422 51 HOH HOH . F 3 HOH B 23 423 52 HOH HOH . F 3 HOH B 24 424 53 HOH HOH . F 3 HOH B 25 425 54 HOH HOH . F 3 HOH B 26 426 55 HOH HOH . F 3 HOH B 27 427 56 HOH HOH . F 3 HOH B 28 428 61 HOH HOH . F 3 HOH B 29 429 62 HOH HOH . F 3 HOH B 30 430 64 HOH HOH . F 3 HOH B 31 431 66 HOH HOH . F 3 HOH B 32 432 70 HOH HOH . F 3 HOH B 33 433 74 HOH HOH . F 3 HOH B 34 434 76 HOH HOH . F 3 HOH B 35 435 77 HOH HOH . F 3 HOH B 36 436 78 HOH HOH . F 3 HOH B 37 437 79 HOH HOH . F 3 HOH B 38 438 80 HOH HOH . F 3 HOH B 39 439 82 HOH HOH . F 3 HOH B 40 440 83 HOH HOH . F 3 HOH B 41 441 86 HOH HOH . F 3 HOH B 42 442 88 HOH HOH . F 3 HOH B 43 443 91 HOH HOH . F 3 HOH B 44 444 94 HOH HOH . F 3 HOH B 45 445 95 HOH HOH . F 3 HOH B 46 446 99 HOH HOH . F 3 HOH B 47 447 100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.806 _atom_site.Cartn_y -4.577 _atom_site.Cartn_z 19.546 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 1416 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 476 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #