data_4DVR
#
_model_server_result.job_id            mH7ER5NsbrFbfjTtibR1aA 
_model_server_result.datetime_utc      '2024-10-17 19:29:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dvr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":505}' 
#
_entry.id    4DVR 
#
_exptl.entry_id    4DVR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DVR 
_cell.length_a            53.445 
_cell.length_b            109.738 
_cell.length_c            130.682 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DVR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 37 G CYS 119 1_555 A SG CYS 50 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 63 G CYS 218 1_555 A SG CYS 92 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 73 G CYS 228 1_555 A SG CYS 84 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 141 G CYS 296 1_555 A SG CYS 160 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 207 G CYS 378 1_555 A SG CYS 266 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 214 G CYS 385 1_555 A SG CYS 239 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 B SG CYS 133 L CYS 133 1_555 B SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 C SG CYS 146 H CYS 146 1_555 C SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 79 G ASN 234 1_555 D C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 A ND2 ASN 107 G ASN 262 1_555 E C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 121 G ASN 276 1_555 F C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 A ND2 ASN 134 G ASN 289 1_555 G C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale5 A ND2 ASN 140 G ASN 295 1_555 H C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 A ND2 ASN 215 G ASN 386 1_555 I C1 NAG . G NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale7 A ND2 ASN 269 G ASN 448 1_555 J C1 NAG . G NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 285 n n 
C1 O1 NAG sing 286 n n 
C1 O5 NAG sing 287 n n 
C1 H1 NAG sing 288 n n 
C2 C3 NAG sing 289 n n 
C2 N2 NAG sing 290 n n 
C2 H2 NAG sing 291 n n 
C3 C4 NAG sing 292 n n 
C3 O3 NAG sing 293 n n 
C3 H3 NAG sing 294 n n 
C4 C5 NAG sing 295 n n 
C4 O4 NAG sing 296 n n 
C4 H4 NAG sing 297 n n 
C5 C6 NAG sing 298 n n 
C5 O5 NAG sing 299 n n 
C5 H5 NAG sing 300 n n 
C6 O6 NAG sing 301 n n 
C6 H61 NAG sing 302 n n 
C6 H62 NAG sing 303 n n 
C7 C8 NAG sing 304 n n 
C7 N2 NAG sing 305 n n 
C7 O7 NAG doub 306 n n 
C8 H81 NAG sing 307 n n 
C8 H82 NAG sing 308 n n 
C8 H83 NAG sing 309 n n 
N2 HN2 NAG sing 310 n n 
O1 HO1 NAG sing 311 n n 
O3 HO3 NAG sing 312 n n 
O4 HO4 NAG sing 313 n n 
O6 HO6 NAG sing 314 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4DVR 
_atom_sites.fract_transf_matrix[1][1]    0.018711 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009113 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007652 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG G 1 501 734 NAG NAG . 
E 4 NAG G 1 502 762 NAG NAG . 
F 4 NAG G 1 503 776 NAG NAG . 
G 4 NAG G 1 504 789 NAG NAG . 
H 4 NAG G 1 505 795 NAG NAG . 
I 4 NAG G 1 506 886 NAG NAG . 
J 4 NAG G 1 507 948 NAG NAG . 
K 5 0LY G 1 508 1 0LY 0LY . 
L 6 HOH G 1 601 2 HOH HOH . 
L 6 HOH G 2 602 3 HOH HOH . 
L 6 HOH G 3 603 4 HOH HOH . 
L 6 HOH G 4 604 7 HOH HOH . 
L 6 HOH G 5 605 8 HOH HOH . 
L 6 HOH G 6 606 13 HOH HOH . 
L 6 HOH G 7 607 16 HOH HOH . 
L 6 HOH G 8 608 17 HOH HOH . 
L 6 HOH G 9 609 20 HOH HOH . 
L 6 HOH G 10 610 24 HOH HOH . 
L 6 HOH G 11 611 27 HOH HOH . 
L 6 HOH G 12 612 28 HOH HOH . 
L 6 HOH G 13 613 31 HOH HOH . 
L 6 HOH G 14 614 32 HOH HOH . 
L 6 HOH G 15 615 35 HOH HOH . 
L 6 HOH G 16 616 38 HOH HOH . 
L 6 HOH G 17 617 39 HOH HOH . 
L 6 HOH G 18 618 40 HOH HOH . 
L 6 HOH G 19 619 41 HOH HOH . 
L 6 HOH G 20 620 45 HOH HOH . 
L 6 HOH G 21 621 49 HOH HOH . 
L 6 HOH G 22 622 50 HOH HOH . 
L 6 HOH G 23 623 52 HOH HOH . 
L 6 HOH G 24 624 53 HOH HOH . 
L 6 HOH G 25 625 57 HOH HOH . 
L 6 HOH G 26 626 60 HOH HOH . 
L 6 HOH G 27 627 63 HOH HOH . 
L 6 HOH G 28 628 66 HOH HOH . 
L 6 HOH G 29 629 68 HOH HOH . 
L 6 HOH G 30 630 70 HOH HOH . 
L 6 HOH G 31 631 71 HOH HOH . 
L 6 HOH G 32 632 74 HOH HOH . 
L 6 HOH G 33 633 78 HOH HOH . 
L 6 HOH G 34 634 79 HOH HOH . 
L 6 HOH G 35 635 80 HOH HOH . 
L 6 HOH G 36 636 82 HOH HOH . 
L 6 HOH G 37 637 84 HOH HOH . 
L 6 HOH G 38 638 86 HOH HOH . 
L 6 HOH G 39 639 90 HOH HOH . 
L 6 HOH G 40 640 91 HOH HOH . 
L 6 HOH G 41 641 92 HOH HOH . 
L 6 HOH G 42 642 93 HOH HOH . 
L 6 HOH G 43 643 95 HOH HOH . 
L 6 HOH G 44 644 96 HOH HOH . 
L 6 HOH G 45 645 97 HOH HOH . 
L 6 HOH G 46 646 100 HOH HOH . 
L 6 HOH G 47 647 102 HOH HOH . 
L 6 HOH G 48 648 103 HOH HOH . 
L 6 HOH G 49 649 105 HOH HOH . 
L 6 HOH G 50 650 112 HOH HOH . 
M 6 HOH L 1 301 1 HOH HOH . 
M 6 HOH L 2 302 9 HOH HOH . 
M 6 HOH L 3 303 10 HOH HOH . 
M 6 HOH L 4 304 11 HOH HOH . 
M 6 HOH L 5 305 15 HOH HOH . 
M 6 HOH L 6 306 18 HOH HOH . 
M 6 HOH L 7 307 21 HOH HOH . 
M 6 HOH L 8 308 25 HOH HOH . 
M 6 HOH L 9 309 26 HOH HOH . 
M 6 HOH L 10 310 34 HOH HOH . 
M 6 HOH L 11 311 36 HOH HOH . 
M 6 HOH L 12 312 47 HOH HOH . 
M 6 HOH L 13 313 54 HOH HOH . 
M 6 HOH L 14 314 55 HOH HOH . 
M 6 HOH L 15 315 56 HOH HOH . 
M 6 HOH L 16 316 58 HOH HOH . 
M 6 HOH L 17 317 59 HOH HOH . 
M 6 HOH L 18 318 62 HOH HOH . 
M 6 HOH L 19 319 65 HOH HOH . 
M 6 HOH L 20 320 72 HOH HOH . 
M 6 HOH L 21 321 75 HOH HOH . 
M 6 HOH L 22 322 76 HOH HOH . 
M 6 HOH L 23 323 77 HOH HOH . 
M 6 HOH L 24 324 81 HOH HOH . 
M 6 HOH L 25 325 83 HOH HOH . 
M 6 HOH L 26 326 88 HOH HOH . 
M 6 HOH L 27 327 106 HOH HOH . 
M 6 HOH L 28 328 108 HOH HOH . 
M 6 HOH L 29 329 110 HOH HOH . 
N 6 HOH H 1 301 5 HOH HOH . 
N 6 HOH H 2 302 6 HOH HOH . 
N 6 HOH H 3 303 12 HOH HOH . 
N 6 HOH H 4 304 14 HOH HOH . 
N 6 HOH H 5 305 19 HOH HOH . 
N 6 HOH H 6 306 22 HOH HOH . 
N 6 HOH H 7 307 23 HOH HOH . 
N 6 HOH H 8 308 29 HOH HOH . 
N 6 HOH H 9 309 30 HOH HOH . 
N 6 HOH H 10 310 33 HOH HOH . 
N 6 HOH H 11 311 37 HOH HOH . 
N 6 HOH H 12 312 42 HOH HOH . 
N 6 HOH H 13 313 43 HOH HOH . 
N 6 HOH H 14 314 44 HOH HOH . 
N 6 HOH H 15 315 46 HOH HOH . 
N 6 HOH H 16 316 48 HOH HOH . 
N 6 HOH H 17 317 51 HOH HOH . 
N 6 HOH H 18 318 61 HOH HOH . 
N 6 HOH H 19 319 64 HOH HOH . 
N 6 HOH H 20 320 67 HOH HOH . 
N 6 HOH H 21 321 69 HOH HOH . 
N 6 HOH H 22 322 73 HOH HOH . 
N 6 HOH H 23 323 85 HOH HOH . 
N 6 HOH H 24 324 87 HOH HOH . 
N 6 HOH H 25 325 89 HOH HOH . 
N 6 HOH H 26 326 94 HOH HOH . 
N 6 HOH H 27 327 98 HOH HOH . 
N 6 HOH H 28 328 99 HOH HOH . 
N 6 HOH H 29 329 101 HOH HOH . 
N 6 HOH H 30 330 104 HOH HOH . 
N 6 HOH H 31 331 107 HOH HOH . 
N 6 HOH H 32 332 109 HOH HOH . 
N 6 HOH H 33 333 111 HOH HOH . 
N 6 HOH H 34 334 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 4 28.909 15.849 110.334 1 83.62 ? C1 NAG 505 G 1 
HETATM 2 C C2 NAG . . . H 4 28.866 14.398 110.797 1 95.45 ? C2 NAG 505 G 1 
HETATM 3 C C3 NAG . . . H 4 28.896 14.299 112.317 1 100.58 ? C3 NAG 505 G 1 
HETATM 4 C C4 NAG . . . H 4 30.011 15.162 112.89 1 98.8 ? C4 NAG 505 G 1 
HETATM 5 C C5 NAG . . . H 4 29.955 16.574 112.32 1 80.93 ? C5 NAG 505 G 1 
HETATM 6 C C6 NAG . . . H 4 31.117 17.412 112.839 1 68.43 ? C6 NAG 505 G 1 
HETATM 7 C C7 NAG . . . H 4 26.723 13.284 111.064 1 114.58 ? C7 NAG 505 G 1 
HETATM 8 C C8 NAG . . . H 4 26.563 11.793 111.108 1 114.31 ? C8 NAG 505 G 1 
HETATM 9 N N2 NAG . . . H 4 27.678 13.755 110.268 1 100.81 ? N2 NAG 505 G 1 
HETATM 10 O O3 NAG . . . H 4 29.102 12.957 112.698 1 105.44 ? O3 NAG 505 G 1 
HETATM 11 O O4 NAG . . . H 4 29.888 15.217 114.294 1 111.24 ? O4 NAG 505 G 1 
HETATM 12 O O5 NAG . . . H 4 30 16.535 110.911 1 87.81 ? O5 NAG 505 G 1 
HETATM 13 O O6 NAG . . . H 4 31.056 18.702 112.273 1 65.71 ? O6 NAG 505 G 1 
HETATM 14 O O7 NAG . . . H 4 25.996 14.011 111.739 1 124.79 ? O7 NAG 505 G 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#