data_4DX2 # _model_server_result.job_id Z95p6-AWvl_vkCoiKKSUkQ _model_server_result.datetime_utc '2025-07-31 23:24:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dx2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4DX2 # _exptl.entry_id 4DX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DX2 _cell.length_a 147.89 _cell.length_b 147.89 _cell.length_c 93.901 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 119 n n C2 C1 BGC sing 120 n n C2 O2 BGC sing 121 n n C2 H2 BGC sing 122 n n C3 C4 BGC sing 123 n n C3 O3 BGC sing 124 n n C3 H3 BGC sing 125 n n C4 C5 BGC sing 126 n n C4 O4 BGC sing 127 n n C4 H4 BGC sing 128 n n C5 C6 BGC sing 129 n n C5 O5 BGC sing 130 n n C5 H5 BGC sing 131 n n C6 O6 BGC sing 132 n n C6 H61 BGC sing 133 n n C6 H62 BGC sing 134 n n C1 O1 BGC sing 135 n n C1 O5 BGC sing 136 n n C1 H1 BGC sing 137 n n O1 HO1 BGC sing 138 n n O2 HO2 BGC sing 139 n n O3 HO3 BGC sing 140 n n O4 HO4 BGC sing 141 n n O6 HO6 BGC sing 142 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4DX2 _atom_sites.fract_transf_matrix[1][1] 0.006762 _atom_sites.fract_transf_matrix[1][2] 0.003904 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BGC A 1 501 1 BGC GLC . D 3 ATP A 1 502 1 ATP ATP . E 4 GOL B 1 501 1 GOL GOL . F 5 HOH A 1 601 1 HOH HOH . F 5 HOH A 2 602 5 HOH HOH . F 5 HOH A 3 603 8 HOH HOH . F 5 HOH A 4 604 9 HOH HOH . F 5 HOH A 5 605 11 HOH HOH . F 5 HOH A 6 606 13 HOH HOH . F 5 HOH A 7 607 16 HOH HOH . F 5 HOH A 8 608 18 HOH HOH . F 5 HOH A 9 609 19 HOH HOH . F 5 HOH A 10 610 21 HOH HOH . F 5 HOH A 11 611 24 HOH HOH . F 5 HOH A 12 612 25 HOH HOH . F 5 HOH A 13 613 26 HOH HOH . F 5 HOH A 14 614 28 HOH HOH . F 5 HOH A 15 615 29 HOH HOH . F 5 HOH A 16 616 30 HOH HOH . F 5 HOH A 17 617 31 HOH HOH . F 5 HOH A 18 618 32 HOH HOH . F 5 HOH A 19 619 34 HOH HOH . F 5 HOH A 20 620 35 HOH HOH . F 5 HOH A 21 621 37 HOH HOH . F 5 HOH A 22 622 38 HOH HOH . F 5 HOH A 23 623 39 HOH HOH . F 5 HOH A 24 624 41 HOH HOH . F 5 HOH A 25 625 42 HOH HOH . F 5 HOH A 26 626 43 HOH HOH . F 5 HOH A 27 627 44 HOH HOH . F 5 HOH A 28 628 45 HOH HOH . F 5 HOH A 29 629 47 HOH HOH . F 5 HOH A 30 630 48 HOH HOH . F 5 HOH A 31 631 49 HOH HOH . F 5 HOH A 32 632 50 HOH HOH . F 5 HOH A 33 633 51 HOH HOH . F 5 HOH A 34 634 52 HOH HOH . F 5 HOH A 35 635 53 HOH HOH . F 5 HOH A 36 636 54 HOH HOH . F 5 HOH A 37 637 55 HOH HOH . F 5 HOH A 38 638 61 HOH HOH . F 5 HOH A 39 639 65 HOH HOH . F 5 HOH A 40 640 68 HOH HOH . F 5 HOH A 41 641 69 HOH HOH . F 5 HOH A 42 642 73 HOH HOH . G 5 HOH B 1 601 2 HOH HOH . G 5 HOH B 2 602 3 HOH HOH . G 5 HOH B 3 603 4 HOH HOH . G 5 HOH B 4 604 6 HOH HOH . G 5 HOH B 5 605 7 HOH HOH . G 5 HOH B 6 606 10 HOH HOH . G 5 HOH B 7 607 12 HOH HOH . G 5 HOH B 8 608 14 HOH HOH . G 5 HOH B 9 609 15 HOH HOH . G 5 HOH B 10 610 17 HOH HOH . G 5 HOH B 11 611 20 HOH HOH . G 5 HOH B 12 612 22 HOH HOH . G 5 HOH B 13 613 23 HOH HOH . G 5 HOH B 14 614 27 HOH HOH . G 5 HOH B 15 615 33 HOH HOH . G 5 HOH B 16 616 40 HOH HOH . G 5 HOH B 17 617 46 HOH HOH . G 5 HOH B 18 618 56 HOH HOH . G 5 HOH B 19 619 57 HOH HOH . G 5 HOH B 20 620 58 HOH HOH . G 5 HOH B 21 621 59 HOH HOH . G 5 HOH B 22 622 60 HOH HOH . G 5 HOH B 23 623 62 HOH HOH . G 5 HOH B 24 624 63 HOH HOH . G 5 HOH B 25 625 64 HOH HOH . G 5 HOH B 26 626 66 HOH HOH . G 5 HOH B 27 627 67 HOH HOH . G 5 HOH B 28 628 70 HOH HOH . G 5 HOH B 29 629 71 HOH HOH . G 5 HOH B 30 630 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . C 2 -30.753 61.964 34.146 1 100.32 ? C2 BGC 501 A 1 HETATM 2 C C3 BGC . . . C 2 -31.095 62.215 35.643 1 101.66 ? C3 BGC 501 A 1 HETATM 3 C C4 BGC . . . C 2 -32.4 61.475 36.094 1 99.75 ? C4 BGC 501 A 1 HETATM 4 C C5 BGC . . . C 2 -32.553 60.027 35.541 1 94.65 ? C5 BGC 501 A 1 HETATM 5 C C6 BGC . . . C 2 -34.021 59.585 35.488 1 92.55 ? C6 BGC 501 A 1 HETATM 6 C C1 BGC . . . C 2 -30.765 60.413 33.841 1 93.8 ? C1 BGC 501 A 1 HETATM 7 O O1 BGC . . . C 2 -30.587 60.011 32.483 1 76 ? O1 BGC 501 A 1 HETATM 8 O O2 BGC . . . C 2 -29.59 62.735 33.772 1 76.26 ? O2 BGC 501 A 1 HETATM 9 O O3 BGC . . . C 2 -31.104 63.618 35.909 1 88.04 ? O3 BGC 501 A 1 HETATM 10 O O4 BGC . . . C 2 -32.559 61.425 37.509 1 80.11 ? O4 BGC 501 A 1 HETATM 11 O O5 BGC . . . C 2 -31.994 59.78 34.242 1 97.77 ? O5 BGC 501 A 1 HETATM 12 O O6 BGC . . . C 2 -34.857 60.377 34.638 1 89.46 ? O6 BGC 501 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 593 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #