data_4DX6 # _model_server_result.job_id XMcYktI6E-vaVjBx6iJcnA _model_server_result.datetime_utc '2024-11-21 13:48:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1102}' # _entry.id 4DX6 # _exptl.entry_id 4DX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DX6 _cell.length_a 145.69 _cell.length_b 165.45 _cell.length_c 245.42 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 192 n n C1B O1B LMT sing 193 n n C1B O5B LMT sing 194 n n C1B H1B LMT sing 195 n n C2B C3B LMT sing 196 n n C2B O2B LMT sing 197 n n C2B H2B LMT sing 198 n n C3B C4B LMT sing 199 n n C3B O3B LMT sing 200 n n C3B H3B LMT sing 201 n n C4B C5B LMT sing 202 n n C4B O4' LMT sing 203 n n C4B H4B LMT sing 204 n n C5B C6B LMT sing 205 n n C5B O5B LMT sing 206 n n C5B H5B LMT sing 207 n n C6B O6B LMT sing 208 n n C6B "H6'2" LMT sing 209 n n C6B "H6'1" LMT sing 210 n n O1B C4' LMT sing 211 n n O2B H2O1 LMT sing 212 n n O3B H3O1 LMT sing 213 n n O4' H4O1 LMT sing 214 n n O6B H6B LMT sing 215 n n C1' C2' LMT sing 216 n n C1' O1' LMT sing 217 n n C1' O5' LMT sing 218 n n C1' H1' LMT sing 219 n n C2' C3' LMT sing 220 n n C2' O2' LMT sing 221 n n C2' H2' LMT sing 222 n n C3' C4' LMT sing 223 n n C3' O3' LMT sing 224 n n C3' H3' LMT sing 225 n n C4' C5' LMT sing 226 n n C4' H4' LMT sing 227 n n C5' C6' LMT sing 228 n n C5' O5' LMT sing 229 n n C5' H5' LMT sing 230 n n C6' O6' LMT sing 231 n n C6' H6D LMT sing 232 n n C6' H6E LMT sing 233 n n O1' C1 LMT sing 234 n n O2' H2O2 LMT sing 235 n n O3' H3O2 LMT sing 236 n n O6' H6' LMT sing 237 n n C1 C2 LMT sing 238 n n C1 H12 LMT sing 239 n n C1 H11 LMT sing 240 n n C2 C3 LMT sing 241 n n C2 H22 LMT sing 242 n n C2 H21 LMT sing 243 n n C3 C4 LMT sing 244 n n C3 H32 LMT sing 245 n n C3 H31 LMT sing 246 n n C4 C5 LMT sing 247 n n C4 H42 LMT sing 248 n n C4 H41 LMT sing 249 n n C5 C6 LMT sing 250 n n C5 H52 LMT sing 251 n n C5 H51 LMT sing 252 n n C6 C7 LMT sing 253 n n C6 H62 LMT sing 254 n n C6 H61 LMT sing 255 n n C7 C8 LMT sing 256 n n C7 H72 LMT sing 257 n n C7 H71 LMT sing 258 n n C8 C9 LMT sing 259 n n C8 H82 LMT sing 260 n n C8 H81 LMT sing 261 n n C9 C10 LMT sing 262 n n C9 H92 LMT sing 263 n n C9 H91 LMT sing 264 n n C10 C11 LMT sing 265 n n C10 H102 LMT sing 266 n n C10 H101 LMT sing 267 n n C11 C12 LMT sing 268 n n C11 H112 LMT sing 269 n n C11 H111 LMT sing 270 n n C12 H123 LMT sing 271 n n C12 H122 LMT sing 272 n n C12 H121 LMT sing 273 n n # _atom_sites.entry_id 4DX6 _atom_sites.fract_transf_matrix[1][1] 0.006864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004075 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 LMT A 1 1101 1101 LMT LMT . G 3 LMT A 1 1102 1102 LMT LMT . H 3 LMT B 1 1101 1101 LMT LMT . I 3 LMT B 1 1102 1102 LMT LMT . J 3 LMT B 1 1103 1103 LMT LMT . K 3 LMT C 1 1101 1103 LMT LMT . L 3 LMT C 1 1102 1101 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . L 3 87.922 3.817 -77.59 1 80.18 ? C1B LMT 1102 C 1 HETATM 2 C C2B LMT . . . L 3 87.816 5.127 -78.269 1 73.75 ? C2B LMT 1102 C 1 HETATM 3 C C3B LMT . . . L 3 86.431 5.282 -78.728 1 75.38 ? C3B LMT 1102 C 1 HETATM 4 C C4B LMT . . . L 3 86.198 4.334 -79.841 1 80.53 ? C4B LMT 1102 C 1 HETATM 5 C C5B LMT . . . L 3 86.454 2.903 -79.43 1 80.8 ? C5B LMT 1102 C 1 HETATM 6 C C6B LMT . . . L 3 86.635 2.088 -80.671 1 90.42 ? C6B LMT 1102 C 1 HETATM 7 O O1B LMT . . . L 3 87.021 3.812 -76.528 1 92.44 ? O1B LMT 1102 C 1 HETATM 8 O O2B LMT . . . L 3 88.23 6.23 -77.45 1 63.01 ? O2B LMT 1102 C 1 HETATM 9 O O3B LMT . . . L 3 86.109 6.619 -79.125 1 72.46 ? O3B LMT 1102 C 1 HETATM 10 O O4' LMT . . . L 3 84.898 4.48 -80.34 1 71.87 ? O4' LMT 1102 C 1 HETATM 11 O O5B LMT . . . L 3 87.572 2.689 -78.533 1 73.59 ? O5B LMT 1102 C 1 HETATM 12 O O6B LMT . . . L 3 85.859 0.926 -80.759 1 95.47 ? O6B LMT 1102 C 1 HETATM 13 C C1' LMT . . . L 3 86.861 2.482 -72.544 1 89.96 ? C1' LMT 1102 C 1 HETATM 14 C C2' LMT . . . L 3 87.831 3.588 -72.867 1 95.06 ? C2' LMT 1102 C 1 HETATM 15 C C3' LMT . . . L 3 87.592 4.138 -74.245 1 101.97 ? C3' LMT 1102 C 1 HETATM 16 C C4' LMT . . . L 3 87.481 3.155 -75.292 1 94.82 ? C4' LMT 1102 C 1 HETATM 17 C C5' LMT . . . L 3 86.539 2.054 -74.921 1 85.75 ? C5' LMT 1102 C 1 HETATM 18 C C6' LMT . . . L 3 86.574 0.925 -75.901 1 74.95 ? C6' LMT 1102 C 1 HETATM 19 O O1' LMT . . . L 3 87.217 1.839 -71.345 1 89.81 ? O1' LMT 1102 C 1 HETATM 20 O O2' LMT . . . L 3 87.75 4.631 -71.918 1 92.32 ? O2' LMT 1102 C 1 HETATM 21 O O3' LMT . . . L 3 88.633 5.105 -74.531 1 110.85 ? O3' LMT 1102 C 1 HETATM 22 O O5' LMT . . . L 3 86.793 1.501 -73.543 1 84.24 ? O5' LMT 1102 C 1 HETATM 23 O O6' LMT . . . L 3 86.473 -0.393 -75.366 1 63.03 ? O6' LMT 1102 C 1 HETATM 24 C C1 LMT . . . L 3 86.241 1.18 -70.596 1 87.31 ? C1 LMT 1102 C 1 HETATM 25 C C2 LMT . . . L 3 86.361 -0.324 -70.436 1 84.94 ? C2 LMT 1102 C 1 HETATM 26 C C3 LMT . . . L 3 85.904 -0.932 -69.122 1 83.35 ? C3 LMT 1102 C 1 HETATM 27 C C4 LMT . . . L 3 86.39 -0.274 -67.848 1 89.53 ? C4 LMT 1102 C 1 HETATM 28 C C5 LMT . . . L 3 86.383 -1.117 -66.577 1 99.49 ? C5 LMT 1102 C 1 HETATM 29 C C6 LMT . . . L 3 87.141 -0.551 -65.35 1 104.81 ? C6 LMT 1102 C 1 HETATM 30 C C7 LMT . . . L 3 87.332 -1.424 -64.106 1 106.15 ? C7 LMT 1102 C 1 HETATM 31 C C8 LMT . . . L 3 87.34 -0.718 -62.742 1 104.69 ? C8 LMT 1102 C 1 HETATM 32 C C9 LMT . . . L 3 86.289 0.371 -62.52 1 103.94 ? C9 LMT 1102 C 1 HETATM 33 C C10 LMT . . . L 3 85.987 0.87 -61.11 1 98.05 ? C10 LMT 1102 C 1 HETATM 34 C C11 LMT . . . L 3 84.612 1.429 -60.852 1 89.46 ? C11 LMT 1102 C 1 HETATM 35 C C12 LMT . . . L 3 84.109 1.49 -59.436 1 80.32 ? C12 LMT 1102 C 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 35 #