data_4DXE
#
_model_server_result.job_id            3QdaTIvK5KA1nZ-zPkpDyg 
_model_server_result.datetime_utc      '2025-02-05 10:49:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dxe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    4DXE 
#
_exptl.entry_id    4DXE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.87 
_cell.angle_gamma         90 
_cell.entry_id            4DXE 
_cell.length_a            76.968 
_cell.length_b            102.961 
_cell.length_c            77.298 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DXE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,M,N,O,Q,R,S,W,X,Y 1 1 
D,E,F,J,K,L,P,T,U,V,Z,AA,BA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     4DXE 
_atom_sites.fract_transf_matrix[1][1]    0.012992 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006301 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009712 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 MLI A 1 201 1 MLI MLI . 
N 3 MLI B 1 201 2 MLI MLI . 
O 3 MLI C 1 201 3 MLI MLI . 
P 3 MLI F 1 201 4 MLI MLI . 
Q 4 HOH A 1 301 5 HOH HOH . 
Q 4 HOH A 2 302 8 HOH HOH . 
Q 4 HOH A 3 303 13 HOH HOH . 
Q 4 HOH A 4 304 15 HOH HOH . 
Q 4 HOH A 5 305 21 HOH HOH . 
Q 4 HOH A 6 306 23 HOH HOH . 
Q 4 HOH A 7 307 38 HOH HOH . 
Q 4 HOH A 8 308 39 HOH HOH . 
Q 4 HOH A 9 309 65 HOH HOH . 
Q 4 HOH A 10 310 68 HOH HOH . 
Q 4 HOH A 11 311 70 HOH HOH . 
Q 4 HOH A 12 312 72 HOH HOH . 
Q 4 HOH A 13 313 80 HOH HOH . 
Q 4 HOH A 14 314 86 HOH HOH . 
Q 4 HOH A 15 315 106 HOH HOH . 
Q 4 HOH A 16 316 113 HOH HOH . 
R 4 HOH B 1 301 7 HOH HOH . 
R 4 HOH B 2 302 20 HOH HOH . 
R 4 HOH B 3 303 24 HOH HOH . 
R 4 HOH B 4 304 26 HOH HOH . 
R 4 HOH B 5 305 35 HOH HOH . 
R 4 HOH B 6 306 54 HOH HOH . 
R 4 HOH B 7 307 55 HOH HOH . 
R 4 HOH B 8 308 62 HOH HOH . 
R 4 HOH B 9 309 74 HOH HOH . 
R 4 HOH B 10 310 121 HOH HOH . 
S 4 HOH C 1 301 17 HOH HOH . 
S 4 HOH C 2 302 36 HOH HOH . 
S 4 HOH C 3 303 45 HOH HOH . 
S 4 HOH C 4 304 48 HOH HOH . 
S 4 HOH C 5 305 50 HOH HOH . 
S 4 HOH C 6 306 66 HOH HOH . 
S 4 HOH C 7 307 67 HOH HOH . 
S 4 HOH C 8 308 71 HOH HOH . 
S 4 HOH C 9 309 77 HOH HOH . 
S 4 HOH C 10 310 100 HOH HOH . 
S 4 HOH C 11 311 103 HOH HOH . 
S 4 HOH C 12 312 107 HOH HOH . 
S 4 HOH C 13 313 108 HOH HOH . 
S 4 HOH C 14 314 114 HOH HOH . 
S 4 HOH C 15 315 115 HOH HOH . 
S 4 HOH C 16 316 119 HOH HOH . 
S 4 HOH C 17 317 122 HOH HOH . 
S 4 HOH C 18 318 126 HOH HOH . 
S 4 HOH C 19 319 127 HOH HOH . 
S 4 HOH C 20 320 1 HOH HOH . 
T 4 HOH D 1 201 14 HOH HOH . 
T 4 HOH D 2 202 27 HOH HOH . 
T 4 HOH D 3 203 32 HOH HOH . 
T 4 HOH D 4 204 33 HOH HOH . 
T 4 HOH D 5 205 34 HOH HOH . 
T 4 HOH D 6 206 40 HOH HOH . 
T 4 HOH D 7 207 42 HOH HOH . 
T 4 HOH D 8 208 46 HOH HOH . 
T 4 HOH D 9 209 53 HOH HOH . 
T 4 HOH D 10 210 57 HOH HOH . 
T 4 HOH D 11 211 78 HOH HOH . 
T 4 HOH D 12 212 79 HOH HOH . 
T 4 HOH D 13 213 82 HOH HOH . 
T 4 HOH D 14 214 88 HOH HOH . 
T 4 HOH D 15 215 92 HOH HOH . 
T 4 HOH D 16 216 99 HOH HOH . 
T 4 HOH D 17 217 109 HOH HOH . 
T 4 HOH D 18 218 116 HOH HOH . 
T 4 HOH D 19 219 123 HOH HOH . 
T 4 HOH D 20 220 125 HOH HOH . 
T 4 HOH D 21 221 128 HOH HOH . 
T 4 HOH D 22 222 132 HOH HOH . 
U 4 HOH E 1 201 11 HOH HOH . 
U 4 HOH E 2 202 22 HOH HOH . 
U 4 HOH E 3 203 28 HOH HOH . 
U 4 HOH E 4 204 30 HOH HOH . 
U 4 HOH E 5 205 31 HOH HOH . 
U 4 HOH E 6 206 43 HOH HOH . 
U 4 HOH E 7 207 44 HOH HOH . 
U 4 HOH E 8 208 49 HOH HOH . 
U 4 HOH E 9 209 73 HOH HOH . 
U 4 HOH E 10 210 81 HOH HOH . 
U 4 HOH E 11 211 83 HOH HOH . 
U 4 HOH E 12 212 93 HOH HOH . 
U 4 HOH E 13 213 104 HOH HOH . 
U 4 HOH E 14 214 117 HOH HOH . 
U 4 HOH E 15 215 118 HOH HOH . 
U 4 HOH E 16 216 130 HOH HOH . 
V 4 HOH F 1 301 6 HOH HOH . 
V 4 HOH F 2 302 9 HOH HOH . 
V 4 HOH F 3 303 25 HOH HOH . 
V 4 HOH F 4 304 29 HOH HOH . 
V 4 HOH F 5 305 37 HOH HOH . 
V 4 HOH F 6 306 52 HOH HOH . 
V 4 HOH F 7 307 63 HOH HOH . 
V 4 HOH F 8 308 85 HOH HOH . 
V 4 HOH F 9 309 89 HOH HOH . 
V 4 HOH F 10 310 110 HOH HOH . 
V 4 HOH F 11 311 111 HOH HOH . 
W 4 HOH H 1 101 10 HOH HOH . 
W 4 HOH H 2 102 12 HOH HOH . 
W 4 HOH H 3 103 16 HOH HOH . 
W 4 HOH H 4 104 51 HOH HOH . 
W 4 HOH H 5 105 84 HOH HOH . 
W 4 HOH H 6 106 87 HOH HOH . 
W 4 HOH H 7 107 133 HOH HOH . 
X 4 HOH L 1 101 58 HOH HOH . 
X 4 HOH L 2 102 60 HOH HOH . 
X 4 HOH L 3 103 69 HOH HOH . 
X 4 HOH L 4 104 76 HOH HOH . 
Y 4 HOH K 1 101 19 HOH HOH . 
Y 4 HOH K 2 102 56 HOH HOH . 
Y 4 HOH K 3 103 90 HOH HOH . 
Y 4 HOH K 4 104 91 HOH HOH . 
Y 4 HOH K 5 105 94 HOH HOH . 
Y 4 HOH K 6 106 98 HOH HOH . 
Y 4 HOH K 7 107 101 HOH HOH . 
Y 4 HOH K 8 108 105 HOH HOH . 
Y 4 HOH K 9 109 129 HOH HOH . 
Z 4 HOH G 1 101 47 HOH HOH . 
AA 4 HOH J 1 101 18 HOH HOH . 
AA 4 HOH J 2 102 75 HOH HOH . 
AA 4 HOH J 3 103 131 HOH HOH . 
AA 4 HOH J 4 104 134 HOH HOH . 
BA 4 HOH I 1 101 41 HOH HOH . 
BA 4 HOH I 2 102 59 HOH HOH . 
BA 4 HOH I 3 103 61 HOH HOH . 
BA 4 HOH I 4 104 64 HOH HOH . 
BA 4 HOH I 5 105 95 HOH HOH . 
BA 4 HOH I 6 106 96 HOH HOH . 
BA 4 HOH I 7 107 97 HOH HOH . 
BA 4 HOH I 8 108 102 HOH HOH . 
BA 4 HOH I 9 109 112 HOH HOH . 
BA 4 HOH I 10 110 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . M 3 3.292 35.365 6.435 1 72.26 ? C1 MLI 201 A 1 
HETATM 2 C C2 MLI . . . M 3 4.093 36.6 6.78 1 74.18 ? C2 MLI 201 A 1 
HETATM 3 C C3 MLI . . . M 3 3.877 34.163 7.141 1 72.01 ? C3 MLI 201 A 1 
HETATM 4 O O6 MLI . . . M 3 5.249 36.706 6.308 1 75.86 ? O6 MLI 201 A 1 
HETATM 5 O O7 MLI . . . M 3 3.574 37.466 7.523 1 73.43 ? O7 MLI 201 A 1 
HETATM 6 O O8 MLI . . . M 3 3.424 33.036 6.868 1 71.19 ? O8 MLI 201 A 1 
HETATM 7 O O9 MLI . . . M 3 4.789 34.326 7.978 1 72.44 ? O9 MLI 201 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#