data_4DXG
#
_model_server_result.job_id            VRHXSH6GzdHcZAO5EJHhKg 
_model_server_result.datetime_utc      '2024-11-24 14:54:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dxg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":305}' 
#
_entry.id    4DXG 
#
_exptl.entry_id    4DXG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              302.368 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DXG 
_cell.length_a            61.88 
_cell.length_b            78.88 
_cell.length_c            97.701 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DXG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 GAL NDG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 SIA GAL C2 O2 . O3 HO3 . sing 
3 ? 2 4 1 FUC NDG C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NDG 1 B 1 NDG A 253 NAG 
2 n B GAL 2 B 2 GAL A 252 GAL 
2 n B SIA 3 B 3 SIA A 251 SIA 
2 n B FUC 4 B 4 FUC A 254 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O4 NDG . B NDG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 B O3 NDG . B NDG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale3 B O3 GAL . B GAL 2 1_555 B C2 SIA . B SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
#
_chem_comp.formula           'C8 H18 N2 O6 S2' 
_chem_comp.formula_weight    302.368 
_chem_comp.id                PIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PIPES;1,4-PIPERAZINEDIETHANESULFONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PIN sing 324 n n 
C1 S1 PIN sing 325 n n 
C1 H11 PIN sing 326 n n 
C1 H12 PIN sing 327 n n 
C2 N1 PIN sing 328 n n 
C2 H21 PIN sing 329 n n 
C2 H22 PIN sing 330 n n 
N1 C3 PIN sing 331 n n 
N1 C4 PIN sing 332 n n 
C3 C4' PIN sing 333 n n 
C3 H31 PIN sing 334 n n 
C3 H32 PIN sing 335 n n 
C4 C3' PIN sing 336 n n 
C4 H41 PIN sing 337 n n 
C4 H42 PIN sing 338 n n 
C1' C2' PIN sing 339 n n 
C1' S1' PIN sing 340 n n 
C1' "H1'1" PIN sing 341 n n 
C1' "H1'2" PIN sing 342 n n 
C2' N1' PIN sing 343 n n 
C2' "H2'1" PIN sing 344 n n 
C2' "H2'2" PIN sing 345 n n 
N1' C3' PIN sing 346 n n 
N1' C4' PIN sing 347 n n 
C3' "H3'1" PIN sing 348 n n 
C3' "H3'2" PIN sing 349 n n 
C4' "H4'1" PIN sing 350 n n 
C4' "H4'2" PIN sing 351 n n 
S1 O1 PIN doub 352 n n 
S1 O2 PIN doub 353 n n 
S1 O3 PIN sing 354 n n 
S1' O1' PIN doub 355 n n 
S1' O2' PIN doub 356 n n 
S1' O3' PIN sing 357 n n 
O3 HO3 PIN sing 358 n n 
O3' HO3' PIN sing 359 n n 
#
_atom_sites.entry_id                     4DXG 
_atom_sites.fract_transf_matrix[1][1]    0.01616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012677 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PIN A 1 305 11 PIN PIN . 
D 4 CL A 1 306 11 CL CL . 
E 4 CL A 1 307 12 CL CL . 
F 5 HOH A 1 401 11 HOH HOH . 
F 5 HOH A 2 402 12 HOH HOH . 
F 5 HOH A 3 403 13 HOH HOH . 
F 5 HOH A 4 404 14 HOH HOH . 
F 5 HOH A 5 405 15 HOH HOH . 
F 5 HOH A 6 406 16 HOH HOH . 
F 5 HOH A 7 407 17 HOH HOH . 
F 5 HOH A 8 408 18 HOH HOH . 
F 5 HOH A 9 409 19 HOH HOH . 
F 5 HOH A 10 410 20 HOH HOH . 
F 5 HOH A 11 411 21 HOH HOH . 
F 5 HOH A 12 412 22 HOH HOH . 
F 5 HOH A 13 413 23 HOH HOH . 
F 5 HOH A 14 414 24 HOH HOH . 
F 5 HOH A 15 415 25 HOH HOH . 
F 5 HOH A 16 416 26 HOH HOH . 
F 5 HOH A 17 417 27 HOH HOH . 
F 5 HOH A 18 418 28 HOH HOH . 
F 5 HOH A 19 419 29 HOH HOH . 
F 5 HOH A 20 420 31 HOH HOH . 
F 5 HOH A 21 421 32 HOH HOH . 
F 5 HOH A 22 422 33 HOH HOH . 
F 5 HOH A 23 423 34 HOH HOH . 
F 5 HOH A 24 424 36 HOH HOH . 
F 5 HOH A 25 425 37 HOH HOH . 
F 5 HOH A 26 426 38 HOH HOH . 
F 5 HOH A 27 427 39 HOH HOH . 
F 5 HOH A 28 428 40 HOH HOH . 
F 5 HOH A 29 429 41 HOH HOH . 
F 5 HOH A 30 430 42 HOH HOH . 
F 5 HOH A 31 431 43 HOH HOH . 
F 5 HOH A 32 432 44 HOH HOH . 
F 5 HOH A 33 433 45 HOH HOH . 
F 5 HOH A 34 434 46 HOH HOH . 
F 5 HOH A 35 435 47 HOH HOH . 
F 5 HOH A 36 436 48 HOH HOH . 
F 5 HOH A 37 437 49 HOH HOH . 
F 5 HOH A 38 438 50 HOH HOH . 
F 5 HOH A 39 439 51 HOH HOH . 
F 5 HOH A 40 440 52 HOH HOH . 
F 5 HOH A 41 441 53 HOH HOH . 
F 5 HOH A 42 442 54 HOH HOH . 
F 5 HOH A 43 443 55 HOH HOH . 
F 5 HOH A 44 444 56 HOH HOH . 
F 5 HOH A 45 445 57 HOH HOH . 
F 5 HOH A 46 446 58 HOH HOH . 
F 5 HOH A 47 447 60 HOH HOH . 
F 5 HOH A 48 448 61 HOH HOH . 
F 5 HOH A 49 449 63 HOH HOH . 
F 5 HOH A 50 450 64 HOH HOH . 
F 5 HOH A 51 451 65 HOH HOH . 
F 5 HOH A 52 452 66 HOH HOH . 
F 5 HOH A 53 453 67 HOH HOH . 
F 5 HOH A 54 454 68 HOH HOH . 
F 5 HOH A 55 455 69 HOH HOH . 
F 5 HOH A 56 456 70 HOH HOH . 
F 5 HOH A 57 457 71 HOH HOH . 
F 5 HOH A 58 458 72 HOH HOH . 
F 5 HOH A 59 459 73 HOH HOH . 
F 5 HOH A 60 460 74 HOH HOH . 
F 5 HOH A 61 461 75 HOH HOH . 
F 5 HOH A 62 462 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIN . . . C 3 -6.285 8.946 36.983 1 24.9 ? C1 PIN 305 A 1 
HETATM 2 C C2 PIN . . . C 3 -7.666 8.597 36.428 1 25.4 ? C2 PIN 305 A 1 
HETATM 3 N N1 PIN . . . C 3 -7.591 8.185 35.028 1 27.51 ? N1 PIN 305 A 1 
HETATM 4 C C3 PIN . . . C 3 -8.609 8.801 34.179 1 27.83 ? C3 PIN 305 A 1 
HETATM 5 C C4 PIN . . . C 3 -6.606 7.214 34.478 1 27.72 ? C4 PIN 305 A 1 
HETATM 6 C C1' PIN . . . C 3 -8.394 5.844 30.504 1 34.79 ? C1' PIN 305 A 1 
HETATM 7 C C2' PIN . . . C 3 -9.198 6.491 31.645 1 31.32 ? C2' PIN 305 A 1 
HETATM 8 N N1' PIN . . . C 3 -8.25 7.068 32.627 1 31.37 ? N1' PIN 305 A 1 
HETATM 9 C C3' PIN . . . C 3 -7.346 6.273 33.5 1 30.56 ? C3' PIN 305 A 1 
HETATM 10 C C4' PIN . . . C 3 -8.201 8.522 32.746 1 28.32 ? C4' PIN 305 A 1 
HETATM 11 S S1 PIN . . . C 3 -6.408 9.612 38.521 1 24.3 ? S1 PIN 305 A 1 
HETATM 12 S S1' PIN . . . C 3 -9.282 5.263 29.188 1 36.91 ? S1' PIN 305 A 1 
HETATM 13 O O1 PIN . . . C 3 -5.084 9.403 39.139 1 20.4 ? O1 PIN 305 A 1 
HETATM 14 O O2 PIN . . . C 3 -6.675 11.058 38.393 1 23.69 ? O2 PIN 305 A 1 
HETATM 15 O O3 PIN . . . C 3 -7.545 9.054 39.313 1 20.59 ? O3 PIN 305 A 1 
HETATM 16 O O1' PIN . . . C 3 -8.979 3.812 29.072 1 35.1 ? O1' PIN 305 A 1 
HETATM 17 O O2' PIN . . . C 3 -8.815 6.016 27.983 1 37.21 ? O2' PIN 305 A 1 
HETATM 18 O O3' PIN . . . C 3 -10.753 5.468 29.341 1 28.5 ? O3' PIN 305 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#