data_4DXO # _model_server_result.job_id GN60VmsmuVaRWQCJAFzsvQ _model_server_result.datetime_utc '2024-10-20 07:36:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4DXO # _exptl.entry_id 4DXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DXO _cell.length_a 47.65 _cell.length_b 78.34 _cell.length_c 119.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 61 A PHE 61 1_555 A N1 CR8 62 A CR8 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C3 CR8 62 A CR8 63 1_555 A N ASN 63 A ASN 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DXO _atom_sites.fract_transf_matrix[1][1] 0.020986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 1 NA NA . C 3 HOH A 1 401 2 HOH HOH . C 3 HOH A 2 402 3 HOH HOH . C 3 HOH A 3 403 4 HOH HOH . C 3 HOH A 4 404 5 HOH HOH . C 3 HOH A 5 405 6 HOH HOH . C 3 HOH A 6 406 7 HOH HOH . C 3 HOH A 7 407 8 HOH HOH . C 3 HOH A 8 408 9 HOH HOH . C 3 HOH A 9 409 10 HOH HOH . C 3 HOH A 10 410 11 HOH HOH . C 3 HOH A 11 411 12 HOH HOH . C 3 HOH A 12 412 13 HOH HOH . C 3 HOH A 13 413 14 HOH HOH . C 3 HOH A 14 414 15 HOH HOH . C 3 HOH A 15 415 16 HOH HOH . C 3 HOH A 16 416 17 HOH HOH . C 3 HOH A 17 417 18 HOH HOH . C 3 HOH A 18 418 19 HOH HOH . C 3 HOH A 19 419 20 HOH HOH . C 3 HOH A 20 420 21 HOH HOH . C 3 HOH A 21 421 22 HOH HOH . C 3 HOH A 22 422 23 HOH HOH . C 3 HOH A 23 423 24 HOH HOH . C 3 HOH A 24 424 25 HOH HOH . C 3 HOH A 25 425 26 HOH HOH . C 3 HOH A 26 426 27 HOH HOH . C 3 HOH A 27 427 29 HOH HOH . C 3 HOH A 28 428 30 HOH HOH . C 3 HOH A 29 429 31 HOH HOH . C 3 HOH A 30 430 32 HOH HOH . C 3 HOH A 31 431 33 HOH HOH . C 3 HOH A 32 432 34 HOH HOH . C 3 HOH A 33 433 35 HOH HOH . C 3 HOH A 34 434 36 HOH HOH . C 3 HOH A 35 435 37 HOH HOH . C 3 HOH A 36 436 38 HOH HOH . C 3 HOH A 37 437 39 HOH HOH . C 3 HOH A 38 438 40 HOH HOH . C 3 HOH A 39 439 41 HOH HOH . C 3 HOH A 40 440 42 HOH HOH . C 3 HOH A 41 441 43 HOH HOH . C 3 HOH A 42 442 44 HOH HOH . C 3 HOH A 43 443 46 HOH HOH . C 3 HOH A 44 444 47 HOH HOH . C 3 HOH A 45 445 48 HOH HOH . C 3 HOH A 46 446 49 HOH HOH . C 3 HOH A 47 447 50 HOH HOH . C 3 HOH A 48 448 51 HOH HOH . C 3 HOH A 49 449 52 HOH HOH . C 3 HOH A 50 450 53 HOH HOH . C 3 HOH A 51 451 55 HOH HOH . C 3 HOH A 52 452 58 HOH HOH . C 3 HOH A 53 453 59 HOH HOH . C 3 HOH A 54 454 60 HOH HOH . C 3 HOH A 55 455 61 HOH HOH . C 3 HOH A 56 456 62 HOH HOH . C 3 HOH A 57 457 63 HOH HOH . C 3 HOH A 58 458 64 HOH HOH . C 3 HOH A 59 459 65 HOH HOH . C 3 HOH A 60 460 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.037 _atom_site.Cartn_y 37.873 _atom_site.Cartn_z -14.731 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #