data_4DXS # _model_server_result.job_id zrQHpuph2Bz99b6WOvhvhw _model_server_result.datetime_utc '2024-11-04 22:27:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 4DXS # _exptl.entry_id 4DXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DXS _cell.length_a 79.32 _cell.length_b 79.32 _cell.length_c 260.03 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 39.66 68.693135 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -39.66 68.693135 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 563 1_555 B SG CYS 12 B CYS 6862 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? disulf ? disulf2 A SG CYS 86 A CYS 601 1_555 A SG CYS 190 A CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc1 A O VAL 75 A VAL 590 1_555 D K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc2 A O GLN 78 A GLN 593 1_555 D K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc3 A O ASP 80 A ASP 595 1_555 D K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.294 ? metalc ? metalc4 A O TYR 192 A TYR 707 1_555 D K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 83 n n C40 C43 DMU sing 84 n n C37 C34 DMU sing 85 n n C34 C31 DMU sing 86 n n C31 C28 DMU sing 87 n n C28 C25 DMU sing 88 n n C22 C25 DMU sing 89 n n C22 C19 DMU sing 90 n n O61 C57 DMU sing 91 n n O4 C7 DMU sing 92 n n C18 C19 DMU sing 93 n n C18 O16 DMU sing 94 n n O5 C6 DMU sing 95 n n O5 C4 DMU sing 96 n n C57 C4 DMU sing 97 n n C6 O16 DMU sing 98 n n C6 C1 DMU sing 99 n n C7 C5 DMU sing 100 n n C7 C8 DMU sing 101 n n C4 C3 DMU sing 102 n n O1 C10 DMU sing 103 n n O1 C9 DMU sing 104 n n C10 C5 DMU sing 105 n n C10 O7 DMU sing 106 n n C5 O3 DMU sing 107 n n O49 C1 DMU sing 108 n n C8 C9 DMU sing 109 n n C8 O2 DMU sing 110 n n C1 C2 DMU sing 111 n n C11 C9 DMU sing 112 n n C11 O6 DMU sing 113 n n C3 O7 DMU sing 114 n n C3 C2 DMU sing 115 n n C2 O55 DMU sing 116 n n C1 H1 DMU sing 117 n n C2 H2 DMU sing 118 n n C3 H3 DMU sing 119 n n C4 H4 DMU sing 120 n n C6 H5 DMU sing 121 n n C18 H6 DMU sing 122 n n C18 H7 DMU sing 123 n n C19 H8 DMU sing 124 n n C19 H9 DMU sing 125 n n C22 H10 DMU sing 126 n n C22 H11 DMU sing 127 n n C25 H12 DMU sing 128 n n C25 H13 DMU sing 129 n n C28 H14 DMU sing 130 n n C28 H15 DMU sing 131 n n C31 H16 DMU sing 132 n n C31 H17 DMU sing 133 n n C34 H18 DMU sing 134 n n C34 H19 DMU sing 135 n n C37 H20 DMU sing 136 n n C37 H21 DMU sing 137 n n C40 H22 DMU sing 138 n n C40 H23 DMU sing 139 n n C43 H24 DMU sing 140 n n C43 H25 DMU sing 141 n n C43 H26 DMU sing 142 n n O49 H27 DMU sing 143 n n O55 H28 DMU sing 144 n n C57 H29 DMU sing 145 n n C57 H30 DMU sing 146 n n O61 H31 DMU sing 147 n n C5 H32 DMU sing 148 n n C7 H33 DMU sing 149 n n C8 H34 DMU sing 150 n n C9 H35 DMU sing 151 n n C10 H36 DMU sing 152 n n O2 H37 DMU sing 153 n n O3 H38 DMU sing 154 n n O4 H39 DMU sing 155 n n C11 H40 DMU sing 156 n n C11 H41 DMU sing 157 n n O6 H42 DMU sing 158 n n # _atom_sites.entry_id 4DXS _atom_sites.fract_transf_matrix[1][1] 0.012607 _atom_sites.fract_transf_matrix[1][2] 0.007279 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DMU A 1 801 801 DMU DMU . D 4 K A 1 802 1001 K K . E 5 HOH A 1 901 1002 HOH HOH . E 5 HOH A 2 902 1003 HOH HOH . E 5 HOH A 3 903 1004 HOH HOH . E 5 HOH A 4 904 1005 HOH HOH . E 5 HOH A 5 905 1006 HOH HOH . E 5 HOH A 6 906 1007 HOH HOH . E 5 HOH A 7 907 1008 HOH HOH . E 5 HOH A 8 908 1009 HOH HOH . E 5 HOH A 9 909 1010 HOH HOH . E 5 HOH A 10 910 1011 HOH HOH . E 5 HOH A 11 911 1013 HOH HOH . E 5 HOH A 12 912 1014 HOH HOH . E 5 HOH A 13 913 1015 HOH HOH . E 5 HOH A 14 914 1016 HOH HOH . E 5 HOH A 15 915 1017 HOH HOH . E 5 HOH A 16 916 1018 HOH HOH . E 5 HOH A 17 917 1019 HOH HOH . E 5 HOH A 18 918 1020 HOH HOH . E 5 HOH A 19 919 1022 HOH HOH . E 5 HOH A 20 920 1023 HOH HOH . E 5 HOH A 21 921 1024 HOH HOH . E 5 HOH A 22 922 1028 HOH HOH . E 5 HOH A 23 923 1029 HOH HOH . E 5 HOH A 24 924 1030 HOH HOH . E 5 HOH A 25 925 1031 HOH HOH . E 5 HOH A 26 926 1032 HOH HOH . E 5 HOH A 27 927 1033 HOH HOH . E 5 HOH A 28 928 1034 HOH HOH . E 5 HOH A 29 929 1035 HOH HOH . E 5 HOH A 30 930 1036 HOH HOH . E 5 HOH A 31 931 1037 HOH HOH . E 5 HOH A 32 932 1038 HOH HOH . E 5 HOH A 33 933 1039 HOH HOH . E 5 HOH A 34 934 1040 HOH HOH . E 5 HOH A 35 935 1041 HOH HOH . E 5 HOH A 36 936 1042 HOH HOH . F 5 HOH B 1 6901 6901 HOH HOH . F 5 HOH B 2 6902 6902 HOH HOH . F 5 HOH B 3 6903 6905 HOH HOH . F 5 HOH B 4 6904 6906 HOH HOH . F 5 HOH B 5 6905 6907 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . C 3 2.169 41.594 28.782 1 156.86 ? C1 DMU 801 A 1 HETATM 2 C C2 DMU . . . C 3 2.766 41.806 27.455 1 150.62 ? C2 DMU 801 A 1 HETATM 3 C C3 DMU . . . C 3 4.112 41.269 27.164 1 142.58 ? C3 DMU 801 A 1 HETATM 4 C C4 DMU . . . C 3 4.785 40.522 28.308 1 134.21 ? C4 DMU 801 A 1 HETATM 5 O O5 DMU . . . C 3 4.391 41.033 29.632 1 140.03 ? O5 DMU 801 A 1 HETATM 6 C C6 DMU . . . C 3 2.977 40.742 29.765 1 154.11 ? C6 DMU 801 A 1 HETATM 7 O O7 DMU . . . C 3 4.008 40.36 26.013 1 135.67 ? O7 DMU 801 A 1 HETATM 8 O O16 DMU . . . C 3 2.459 40.766 31.08 1 166.33 ? O16 DMU 801 A 1 HETATM 9 C C18 DMU . . . C 3 1.577 39.735 31.571 1 149.81 ? C18 DMU 801 A 1 HETATM 10 C C19 DMU . . . C 3 0.369 40.109 32.391 1 130.07 ? C19 DMU 801 A 1 HETATM 11 O O49 DMU . . . C 3 0.9 41.022 28.619 1 166.56 ? O49 DMU 801 A 1 HETATM 12 O O55 DMU . . . C 3 2.744 43.214 27.168 1 150.85 ? O55 DMU 801 A 1 HETATM 13 C C57 DMU . . . C 3 6.254 40.397 28.123 1 120.57 ? C57 DMU 801 A 1 HETATM 14 O O61 DMU . . . C 3 7.034 41.521 28.356 1 123.69 ? O61 DMU 801 A 1 HETATM 15 C C5 DMU . . . C 3 3.597 40.76 23.726 1 118.49 ? C5 DMU 801 A 1 HETATM 16 C C7 DMU . . . C 3 3.812 39.671 22.724 1 113.1 ? C7 DMU 801 A 1 HETATM 17 C C8 DMU . . . C 3 5.193 39.296 22.428 1 109.81 ? C8 DMU 801 A 1 HETATM 18 C C9 DMU . . . C 3 6.193 40.129 23.175 1 111.44 ? C9 DMU 801 A 1 HETATM 19 O O1 DMU . . . C 3 5.864 40.179 24.621 1 115.22 ? O1 DMU 801 A 1 HETATM 20 C C10 DMU . . . C 3 4.598 40.851 24.868 1 121.52 ? C10 DMU 801 A 1 HETATM 21 O O2 DMU . . . C 3 5.379 37.915 22.72 1 99.53 ? O2 DMU 801 A 1 HETATM 22 O O3 DMU . . . C 3 3.527 42.013 23.089 1 116.21 ? O3 DMU 801 A 1 HETATM 23 O O4 DMU . . . C 3 3.177 39.985 21.478 1 107.58 ? O4 DMU 801 A 1 HETATM 24 C C11 DMU . . . C 3 7.586 39.694 22.904 1 96.73 ? C11 DMU 801 A 1 HETATM 25 O O6 DMU . . . C 3 7.947 38.434 23.348 1 87.39 ? O6 DMU 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #