data_4DXW # _model_server_result.job_id 4znqLrPT4b3xuRxNWyOYKw _model_server_result.datetime_utc '2024-11-25 10:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4DXW # _exptl.entry_id 4DXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DXW _cell.length_a 163.437 _cell.length_b 163.437 _cell.length_c 61.071 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 226 A LYS 226 1_555 G CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc2 L O HOH . A HOH 401 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc3 L O HOH . A HOH 402 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 L O HOH . A HOH 403 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 I CA CA . B CA 302 1_555 M O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc6 I CA CA . B CA 302 1_555 N O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 I CA CA . B CA 302 1_555 N O HOH . C HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 328 n n O1 H1P PX4 sing 329 n n O2 P1 PX4 doub 330 n n P1 O3 PX4 sing 331 n n P1 O4 PX4 sing 332 n n O3 C1 PX4 sing 333 n n C1 C2 PX4 sing 334 n n C1 H1 PX4 sing 335 n n C1 H2 PX4 sing 336 n n C2 N1 PX4 sing 337 n n C2 H3 PX4 sing 338 n n C2 H4 PX4 sing 339 n n N1 C3 PX4 sing 340 n n N1 C4 PX4 sing 341 n n N1 C5 PX4 sing 342 n n C3 H5 PX4 sing 343 n n C3 H6 PX4 sing 344 n n C3 H7 PX4 sing 345 n n C4 H8 PX4 sing 346 n n C4 H9 PX4 sing 347 n n C4 H10 PX4 sing 348 n n C5 H11 PX4 sing 349 n n C5 H12 PX4 sing 350 n n C5 H13 PX4 sing 351 n n O4 C6 PX4 sing 352 n n C6 C7 PX4 sing 353 n n C6 H14 PX4 sing 354 n n C6 H15 PX4 sing 355 n n C7 C8 PX4 sing 356 n n C7 O7 PX4 sing 357 n n C7 H16 PX4 sing 358 n n C8 O5 PX4 sing 359 n n C8 H17 PX4 sing 360 n n C8 H18 PX4 sing 361 n n O5 C9 PX4 sing 362 n n C9 O6 PX4 doub 363 n n C9 C10 PX4 sing 364 n n C10 C11 PX4 sing 365 n n C10 H19 PX4 sing 366 n n C10 H20 PX4 sing 367 n n C11 C12 PX4 sing 368 n n C11 H21 PX4 sing 369 n n C11 H22 PX4 sing 370 n n C12 C13 PX4 sing 371 n n C12 H23 PX4 sing 372 n n C12 H24 PX4 sing 373 n n C13 C14 PX4 sing 374 n n C13 H25 PX4 sing 375 n n C13 H26 PX4 sing 376 n n C14 C15 PX4 sing 377 n n C14 H27 PX4 sing 378 n n C14 H28 PX4 sing 379 n n C15 C16 PX4 sing 380 n n C15 H29 PX4 sing 381 n n C15 H30 PX4 sing 382 n n C16 C17 PX4 sing 383 n n C16 H31 PX4 sing 384 n n C16 H32 PX4 sing 385 n n C17 C18 PX4 sing 386 n n C17 H33 PX4 sing 387 n n C17 H34 PX4 sing 388 n n C18 C19 PX4 sing 389 n n C18 H35 PX4 sing 390 n n C18 H36 PX4 sing 391 n n C19 C20 PX4 sing 392 n n C19 H37 PX4 sing 393 n n C19 H38 PX4 sing 394 n n C20 C21 PX4 sing 395 n n C20 H39 PX4 sing 396 n n C20 H40 PX4 sing 397 n n C21 C22 PX4 sing 398 n n C21 H41 PX4 sing 399 n n C21 H42 PX4 sing 400 n n C22 H43 PX4 sing 401 n n C22 H44 PX4 sing 402 n n C22 H45 PX4 sing 403 n n O7 C23 PX4 sing 404 n n C23 O8 PX4 doub 405 n n C23 C24 PX4 sing 406 n n C24 C25 PX4 sing 407 n n C24 H46 PX4 sing 408 n n C24 H47 PX4 sing 409 n n C25 C26 PX4 sing 410 n n C25 H48 PX4 sing 411 n n C25 H49 PX4 sing 412 n n C26 C27 PX4 sing 413 n n C26 H50 PX4 sing 414 n n C26 H51 PX4 sing 415 n n C27 C28 PX4 sing 416 n n C27 H52 PX4 sing 417 n n C27 H53 PX4 sing 418 n n C28 C29 PX4 sing 419 n n C28 H54 PX4 sing 420 n n C28 H55 PX4 sing 421 n n C29 C30 PX4 sing 422 n n C29 H56 PX4 sing 423 n n C29 H57 PX4 sing 424 n n C30 C31 PX4 sing 425 n n C30 H58 PX4 sing 426 n n C30 H59 PX4 sing 427 n n C31 C32 PX4 sing 428 n n C31 H60 PX4 sing 429 n n C31 H61 PX4 sing 430 n n C32 C33 PX4 sing 431 n n C32 H62 PX4 sing 432 n n C32 H63 PX4 sing 433 n n C33 C34 PX4 sing 434 n n C33 H64 PX4 sing 435 n n C33 H65 PX4 sing 436 n n C34 C35 PX4 sing 437 n n C34 H66 PX4 sing 438 n n C34 H67 PX4 sing 439 n n C35 C36 PX4 sing 440 n n C35 H68 PX4 sing 441 n n C35 H69 PX4 sing 442 n n C36 H70 PX4 sing 443 n n C36 H71 PX4 sing 444 n n C36 H72 PX4 sing 445 n n # _atom_sites.entry_id 4DXW _atom_sites.fract_transf_matrix[1][1] 0.006119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BNG A 1 301 300 BNG BNG . F 2 BNG A 1 302 300 BNG BNG . G 3 CA A 1 303 2 CA CA . H 4 PX4 B 1 301 1 PX4 PX4 . I 3 CA B 1 302 3 CA CA . J 2 BNG C 1 301 300 BNG BNG . K 2 BNG C 1 302 300 BNG BNG . L 5 HOH A 1 401 2 HOH HOH . L 5 HOH A 2 402 3 HOH HOH . L 5 HOH A 3 403 6 HOH HOH . M 5 HOH B 1 401 5 HOH HOH . N 5 HOH C 1 401 1 HOH HOH . N 5 HOH C 2 402 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 PX4 . . . H 4 49.484 -46.935 22.392 1 77.65 ? C6 PX4 301 B 1 HETATM 2 C C7 PX4 . . . H 4 49.049 -45.631 21.734 1 91.99 ? C7 PX4 301 B 1 HETATM 3 C C8 PX4 . . . H 4 49.683 -44.455 22.468 1 81.92 ? C8 PX4 301 B 1 HETATM 4 O O5 PX4 . . . H 4 48.729 -43.403 22.593 1 88.71 ? O5 PX4 301 B 1 HETATM 5 C C9 PX4 . . . H 4 49.145 -42.02 22.425 1 88.82 ? C9 PX4 301 B 1 HETATM 6 O O6 PX4 . . . H 4 50.2 -41.653 22.916 1 97.22 ? O6 PX4 301 B 1 HETATM 7 C C10 PX4 . . . H 4 48.28 -41.055 21.65 1 77.93 ? C10 PX4 301 B 1 HETATM 8 C C11 PX4 . . . H 4 48.955 -39.69 21.607 1 74.15 ? C11 PX4 301 B 1 HETATM 9 C C12 PX4 . . . H 4 48.945 -39.121 20.193 1 78.35 ? C12 PX4 301 B 1 HETATM 10 C C13 PX4 . . . H 4 48.598 -37.637 20.203 1 80.45 ? C13 PX4 301 B 1 HETATM 11 C C14 PX4 . . . H 4 47.208 -37.406 20.785 1 80.12 ? C14 PX4 301 B 1 HETATM 12 C C15 PX4 . . . H 4 46.945 -35.92 20.997 1 84.61 ? C15 PX4 301 B 1 HETATM 13 C C16 PX4 . . . H 4 45.487 -35.67 21.365 1 93.3 ? C16 PX4 301 B 1 HETATM 14 C C17 PX4 . . . H 4 44.905 -34.526 20.543 1 101.39 ? C17 PX4 301 B 1 HETATM 15 C C18 PX4 . . . H 4 43.411 -34.722 20.315 1 103.28 ? C18 PX4 301 B 1 HETATM 16 C C19 PX4 . . . H 4 42.946 -33.976 19.07 1 98.41 ? C19 PX4 301 B 1 HETATM 17 C C20 PX4 . . . H 4 41.441 -33.739 19.105 1 90.2 ? C20 PX4 301 B 1 HETATM 18 C C21 PX4 . . . H 4 40.839 -33.845 17.71 1 77.21 ? C21 PX4 301 B 1 HETATM 19 C C22 PX4 . . . H 4 40.555 -32.475 17.135 1 72.76 ? C22 PX4 301 B 1 HETATM 20 O O7 PX4 . . . H 4 49.468 -45.623 20.371 1 105.38 ? O7 PX4 301 B 1 HETATM 21 C C23 PX4 . . . H 4 48.344 -45.479 19.461 1 96.64 ? C23 PX4 301 B 1 HETATM 22 O O8 PX4 . . . H 4 47.654 -46.453 19.209 1 93.77 ? O8 PX4 301 B 1 HETATM 23 C C24 PX4 . . . H 4 48.038 -44.137 18.84 1 86.31 ? C24 PX4 301 B 1 HETATM 24 C C25 PX4 . . . H 4 46.547 -44.045 18.537 1 83.03 ? C25 PX4 301 B 1 HETATM 25 C C26 PX4 . . . H 4 46.248 -42.873 17.61 1 88.72 ? C26 PX4 301 B 1 HETATM 26 C C27 PX4 . . . H 4 44.873 -43.019 16.971 1 95.39 ? C27 PX4 301 B 1 HETATM 27 C C28 PX4 . . . H 4 44.607 -41.889 15.984 1 94.08 ? C28 PX4 301 B 1 HETATM 28 C C29 PX4 . . . H 4 43.68 -40.841 16.589 1 98.28 ? C29 PX4 301 B 1 HETATM 29 C C30 PX4 . . . H 4 44.177 -40.4 17.961 1 96.89 ? C30 PX4 301 B 1 HETATM 30 C C31 PX4 . . . H 4 43.395 -41.09 19.072 1 95.5 ? C31 PX4 301 B 1 HETATM 31 C C32 PX4 . . . H 4 42.092 -40.355 19.361 1 92.58 ? C32 PX4 301 B 1 HETATM 32 C C33 PX4 . . . H 4 42.359 -39.005 20.015 1 95 ? C33 PX4 301 B 1 HETATM 33 C C34 PX4 . . . H 4 42.18 -39.086 21.527 1 90.8 ? C34 PX4 301 B 1 HETATM 34 C C35 PX4 . . . H 4 40.915 -38.359 21.966 1 87 ? C35 PX4 301 B 1 HETATM 35 C C36 PX4 . . . H 4 39.681 -39.03 21.403 1 82.4 ? C36 PX4 301 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #