data_4DY0 # _model_server_result.job_id vEn0y_ZfTwV07jYvrRHP4A _model_server_result.datetime_utc '2024-12-27 03:45:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4DY0 # _exptl.entry_id 4DY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'mucosal heparin' _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DY0 _cell.length_a 140.65 _cell.length_b 140.65 _cell.length_c 93.55 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 1 A,C,D,E,J 4 1 B,F,G,H,I,K 4 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_544 y+1/2,-x-1/2,z-1/4 0 1 0 -1 0 0 0 0 1 70.325 -70.325 -23.3875 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 SGN _pdbx_entity_branch_link.comp_id_2 IDS _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C IDS 1 C 1 IDS J 1 IDS 2 n C SGN 2 C 2 SGN J 1 SGN # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id IDS _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id IDS _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id SGN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id SGN _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.445 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 363 n n S O2 SO4 doub 364 n n S O3 SO4 sing 365 n n S O4 SO4 sing 366 n n # _atom_sites.entry_id 4DY0 _atom_sites.fract_transf_matrix[1][1] 0.00711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SO4 A 1 401 4 SO4 SO4 . E 4 GOL A 1 404 1 GOL GOL . F 3 SO4 B 1 401 1 SO4 SO4 . G 3 SO4 B 1 402 2 SO4 SO4 . H 3 SO4 B 1 403 3 SO4 SO4 . I 4 GOL B 1 404 2 GOL GOL . J 5 HOH A 1 501 19 HOH HOH . J 5 HOH A 2 502 27 HOH HOH . J 5 HOH A 3 503 34 HOH HOH . J 5 HOH A 4 504 36 HOH HOH . J 5 HOH A 5 505 37 HOH HOH . J 5 HOH A 6 506 38 HOH HOH . J 5 HOH A 7 507 39 HOH HOH . J 5 HOH A 8 508 40 HOH HOH . J 5 HOH A 9 509 41 HOH HOH . J 5 HOH A 10 510 42 HOH HOH . J 5 HOH A 11 511 43 HOH HOH . J 5 HOH A 12 512 44 HOH HOH . J 5 HOH A 13 513 45 HOH HOH . J 5 HOH A 14 514 46 HOH HOH . J 5 HOH A 15 515 50 HOH HOH . J 5 HOH A 16 516 53 HOH HOH . J 5 HOH A 17 517 55 HOH HOH . J 5 HOH A 18 518 56 HOH HOH . J 5 HOH A 19 519 57 HOH HOH . J 5 HOH A 20 520 58 HOH HOH . J 5 HOH A 21 521 60 HOH HOH . J 5 HOH A 22 522 61 HOH HOH . J 5 HOH A 23 523 62 HOH HOH . J 5 HOH A 24 524 66 HOH HOH . J 5 HOH A 25 525 69 HOH HOH . J 5 HOH A 26 526 72 HOH HOH . J 5 HOH A 27 527 76 HOH HOH . J 5 HOH A 28 528 78 HOH HOH . J 5 HOH A 29 529 82 HOH HOH . J 5 HOH A 30 530 95 HOH HOH . J 5 HOH A 31 531 106 HOH HOH . J 5 HOH A 32 532 107 HOH HOH . J 5 HOH A 33 533 108 HOH HOH . J 5 HOH A 34 534 110 HOH HOH . J 5 HOH A 35 535 112 HOH HOH . J 5 HOH A 36 536 114 HOH HOH . J 5 HOH A 37 537 115 HOH HOH . J 5 HOH A 38 538 122 HOH HOH . J 5 HOH A 39 539 128 HOH HOH . J 5 HOH A 40 540 130 HOH HOH . J 5 HOH A 41 541 132 HOH HOH . J 5 HOH A 42 542 133 HOH HOH . J 5 HOH A 43 543 134 HOH HOH . J 5 HOH A 44 544 138 HOH HOH . J 5 HOH A 45 545 139 HOH HOH . J 5 HOH A 46 546 141 HOH HOH . J 5 HOH A 47 547 143 HOH HOH . J 5 HOH A 48 548 148 HOH HOH . J 5 HOH A 49 549 149 HOH HOH . J 5 HOH A 50 550 150 HOH HOH . J 5 HOH A 51 551 151 HOH HOH . J 5 HOH A 52 552 152 HOH HOH . J 5 HOH A 53 553 153 HOH HOH . J 5 HOH A 54 554 154 HOH HOH . J 5 HOH A 55 555 155 HOH HOH . J 5 HOH A 56 556 158 HOH HOH . J 5 HOH A 57 557 159 HOH HOH . J 5 HOH A 58 558 162 HOH HOH . J 5 HOH A 59 559 163 HOH HOH . J 5 HOH A 60 560 164 HOH HOH . J 5 HOH A 61 561 167 HOH HOH . J 5 HOH A 62 562 174 HOH HOH . J 5 HOH A 63 563 176 HOH HOH . J 5 HOH A 64 564 181 HOH HOH . J 5 HOH A 65 565 188 HOH HOH . J 5 HOH A 66 566 189 HOH HOH . J 5 HOH A 67 567 190 HOH HOH . J 5 HOH A 68 568 191 HOH HOH . J 5 HOH A 69 569 192 HOH HOH . J 5 HOH A 70 570 193 HOH HOH . J 5 HOH A 71 571 194 HOH HOH . J 5 HOH A 72 572 195 HOH HOH . J 5 HOH A 73 573 196 HOH HOH . J 5 HOH A 74 574 197 HOH HOH . J 5 HOH A 75 575 198 HOH HOH . J 5 HOH A 76 576 199 HOH HOH . J 5 HOH A 77 577 200 HOH HOH . J 5 HOH A 78 578 201 HOH HOH . J 5 HOH A 79 579 202 HOH HOH . J 5 HOH A 80 580 203 HOH HOH . J 5 HOH A 81 581 204 HOH HOH . J 5 HOH A 82 582 205 HOH HOH . J 5 HOH A 83 583 206 HOH HOH . J 5 HOH A 84 584 209 HOH HOH . J 5 HOH A 85 585 210 HOH HOH . J 5 HOH A 86 586 211 HOH HOH . J 5 HOH A 87 587 212 HOH HOH . J 5 HOH A 88 588 213 HOH HOH . J 5 HOH A 89 589 234 HOH HOH . J 5 HOH A 90 590 235 HOH HOH . J 5 HOH A 91 591 237 HOH HOH . J 5 HOH A 92 592 243 HOH HOH . K 5 HOH B 1 501 1 HOH HOH . K 5 HOH B 2 502 2 HOH HOH . K 5 HOH B 3 503 3 HOH HOH . K 5 HOH B 4 504 4 HOH HOH . K 5 HOH B 5 505 5 HOH HOH . K 5 HOH B 6 506 6 HOH HOH . K 5 HOH B 7 507 7 HOH HOH . K 5 HOH B 8 508 8 HOH HOH . K 5 HOH B 9 509 9 HOH HOH . K 5 HOH B 10 510 10 HOH HOH . K 5 HOH B 11 511 11 HOH HOH . K 5 HOH B 12 512 12 HOH HOH . K 5 HOH B 13 513 13 HOH HOH . K 5 HOH B 14 514 14 HOH HOH . K 5 HOH B 15 515 15 HOH HOH . K 5 HOH B 16 516 16 HOH HOH . K 5 HOH B 17 517 17 HOH HOH . K 5 HOH B 18 518 18 HOH HOH . K 5 HOH B 19 519 20 HOH HOH . K 5 HOH B 20 520 21 HOH HOH . K 5 HOH B 21 521 22 HOH HOH . K 5 HOH B 22 522 23 HOH HOH . K 5 HOH B 23 523 24 HOH HOH . K 5 HOH B 24 524 25 HOH HOH . K 5 HOH B 25 525 26 HOH HOH . K 5 HOH B 26 526 28 HOH HOH . K 5 HOH B 27 527 29 HOH HOH . K 5 HOH B 28 528 30 HOH HOH . K 5 HOH B 29 529 31 HOH HOH . K 5 HOH B 30 530 32 HOH HOH . K 5 HOH B 31 531 33 HOH HOH . K 5 HOH B 32 532 35 HOH HOH . K 5 HOH B 33 533 47 HOH HOH . K 5 HOH B 34 534 48 HOH HOH . K 5 HOH B 35 535 49 HOH HOH . K 5 HOH B 36 536 51 HOH HOH . K 5 HOH B 37 537 52 HOH HOH . K 5 HOH B 38 538 54 HOH HOH . K 5 HOH B 39 539 59 HOH HOH . K 5 HOH B 40 540 63 HOH HOH . K 5 HOH B 41 541 64 HOH HOH . K 5 HOH B 42 542 65 HOH HOH . K 5 HOH B 43 543 67 HOH HOH . K 5 HOH B 44 544 68 HOH HOH . K 5 HOH B 45 545 70 HOH HOH . K 5 HOH B 46 546 71 HOH HOH . K 5 HOH B 47 547 73 HOH HOH . K 5 HOH B 48 548 74 HOH HOH . K 5 HOH B 49 549 75 HOH HOH . K 5 HOH B 50 550 77 HOH HOH . K 5 HOH B 51 551 79 HOH HOH . K 5 HOH B 52 552 80 HOH HOH . K 5 HOH B 53 553 81 HOH HOH . K 5 HOH B 54 554 83 HOH HOH . K 5 HOH B 55 555 84 HOH HOH . K 5 HOH B 56 556 85 HOH HOH . K 5 HOH B 57 557 86 HOH HOH . K 5 HOH B 58 558 87 HOH HOH . K 5 HOH B 59 559 88 HOH HOH . K 5 HOH B 60 560 89 HOH HOH . K 5 HOH B 61 561 90 HOH HOH . K 5 HOH B 62 562 91 HOH HOH . K 5 HOH B 63 563 92 HOH HOH . K 5 HOH B 64 564 93 HOH HOH . K 5 HOH B 65 565 94 HOH HOH . K 5 HOH B 66 566 96 HOH HOH . K 5 HOH B 67 567 97 HOH HOH . K 5 HOH B 68 568 98 HOH HOH . K 5 HOH B 69 569 99 HOH HOH . K 5 HOH B 70 570 100 HOH HOH . K 5 HOH B 71 571 101 HOH HOH . K 5 HOH B 72 572 102 HOH HOH . K 5 HOH B 73 573 103 HOH HOH . K 5 HOH B 74 574 104 HOH HOH . K 5 HOH B 75 575 105 HOH HOH . K 5 HOH B 76 576 109 HOH HOH . K 5 HOH B 77 577 111 HOH HOH . K 5 HOH B 78 578 113 HOH HOH . K 5 HOH B 79 579 116 HOH HOH . K 5 HOH B 80 580 117 HOH HOH . K 5 HOH B 81 581 118 HOH HOH . K 5 HOH B 82 582 119 HOH HOH . K 5 HOH B 83 583 120 HOH HOH . K 5 HOH B 84 584 121 HOH HOH . K 5 HOH B 85 585 123 HOH HOH . K 5 HOH B 86 586 124 HOH HOH . K 5 HOH B 87 587 125 HOH HOH . K 5 HOH B 88 588 126 HOH HOH . K 5 HOH B 89 589 127 HOH HOH . K 5 HOH B 90 590 129 HOH HOH . K 5 HOH B 91 591 131 HOH HOH . K 5 HOH B 92 592 135 HOH HOH . K 5 HOH B 93 593 136 HOH HOH . K 5 HOH B 94 594 137 HOH HOH . K 5 HOH B 95 595 140 HOH HOH . K 5 HOH B 96 596 142 HOH HOH . K 5 HOH B 97 597 144 HOH HOH . K 5 HOH B 98 598 145 HOH HOH . K 5 HOH B 99 599 146 HOH HOH . K 5 HOH B 100 600 147 HOH HOH . K 5 HOH B 101 601 156 HOH HOH . K 5 HOH B 102 602 157 HOH HOH . K 5 HOH B 103 603 160 HOH HOH . K 5 HOH B 104 604 161 HOH HOH . K 5 HOH B 105 605 165 HOH HOH . K 5 HOH B 106 606 166 HOH HOH . K 5 HOH B 107 607 168 HOH HOH . K 5 HOH B 108 608 169 HOH HOH . K 5 HOH B 109 609 170 HOH HOH . K 5 HOH B 110 610 171 HOH HOH . K 5 HOH B 111 611 172 HOH HOH . K 5 HOH B 112 612 173 HOH HOH . K 5 HOH B 113 613 175 HOH HOH . K 5 HOH B 114 614 177 HOH HOH . K 5 HOH B 115 615 178 HOH HOH . K 5 HOH B 116 616 179 HOH HOH . K 5 HOH B 117 617 180 HOH HOH . K 5 HOH B 118 618 182 HOH HOH . K 5 HOH B 119 619 183 HOH HOH . K 5 HOH B 120 620 184 HOH HOH . K 5 HOH B 121 621 185 HOH HOH . K 5 HOH B 122 622 186 HOH HOH . K 5 HOH B 123 623 187 HOH HOH . K 5 HOH B 124 624 207 HOH HOH . K 5 HOH B 125 625 208 HOH HOH . K 5 HOH B 126 626 214 HOH HOH . K 5 HOH B 127 627 215 HOH HOH . K 5 HOH B 128 628 216 HOH HOH . K 5 HOH B 129 629 217 HOH HOH . K 5 HOH B 130 630 218 HOH HOH . K 5 HOH B 131 631 219 HOH HOH . K 5 HOH B 132 632 220 HOH HOH . K 5 HOH B 133 633 221 HOH HOH . K 5 HOH B 134 634 222 HOH HOH . K 5 HOH B 135 635 223 HOH HOH . K 5 HOH B 136 636 224 HOH HOH . K 5 HOH B 137 637 225 HOH HOH . K 5 HOH B 138 638 226 HOH HOH . K 5 HOH B 139 639 227 HOH HOH . K 5 HOH B 140 640 228 HOH HOH . K 5 HOH B 141 641 229 HOH HOH . K 5 HOH B 142 642 230 HOH HOH . K 5 HOH B 143 643 231 HOH HOH . K 5 HOH B 144 644 232 HOH HOH . K 5 HOH B 145 645 233 HOH HOH . K 5 HOH B 146 646 236 HOH HOH . K 5 HOH B 147 647 238 HOH HOH . K 5 HOH B 148 648 239 HOH HOH . K 5 HOH B 149 649 240 HOH HOH . K 5 HOH B 150 650 241 HOH HOH . K 5 HOH B 151 651 242 HOH HOH . K 5 HOH B 152 652 244 HOH HOH . K 5 HOH B 153 653 245 HOH HOH . K 5 HOH B 154 654 246 HOH HOH . K 5 HOH B 155 655 247 HOH HOH . K 5 HOH B 156 656 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 3 -11.22 -32.14 42.172 1 39.5 ? S SO4 401 B 1 HETATM 2 O O1 SO4 . . . F 3 -9.798 -31.733 42.194 1 51.23 ? O1 SO4 401 B 1 HETATM 3 O O2 SO4 . . . F 3 -11.623 -32.459 40.787 1 44.66 ? O2 SO4 401 B 1 HETATM 4 O O3 SO4 . . . F 3 -11.398 -33.332 43.03 1 37.26 ? O3 SO4 401 B 1 HETATM 5 O O4 SO4 . . . F 3 -12.054 -31.03 42.682 1 42.66 ? O4 SO4 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #