data_4DY4
#
_model_server_result.job_id            ABeJzkDMATZljE7LmD1EcA 
_model_server_result.datetime_utc      '2024-11-01 06:23:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dy4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":202}' 
#
_entry.id    4DY4 
#
_exptl.entry_id    4DY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DY4 
_cell.length_a            61.15 
_cell.length_b            61.15 
_cell.length_c            169.59 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 278 n n 
C1 C2 PEG sing 279 n n 
C1 H11 PEG sing 280 n n 
C1 H12 PEG sing 281 n n 
O1 HO1 PEG sing 282 n n 
C2 O2 PEG sing 283 n n 
C2 H21 PEG sing 284 n n 
C2 H22 PEG sing 285 n n 
O2 C3 PEG sing 286 n n 
C3 C4 PEG sing 287 n n 
C3 H31 PEG sing 288 n n 
C3 H32 PEG sing 289 n n 
C4 O4 PEG sing 290 n n 
C4 H41 PEG sing 291 n n 
C4 H42 PEG sing 292 n n 
O4 HO4 PEG sing 293 n n 
#
_atom_sites.entry_id                     4DY4 
_atom_sites.fract_transf_matrix[1][1]    0.016353 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016353 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005897 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 201 1 FMN FMN . 
D 3 PEG A 1 202 1 PEG PEG . 
E 3 PEG A 1 203 1 PEG PEG . 
F 2 FMN C 1 201 1 FMN FMN . 
G 3 PEG C 1 202 1 PEG PEG . 
H 4 HOH A 1 301 2 HOH HOH . 
H 4 HOH A 2 302 3 HOH HOH . 
H 4 HOH A 3 303 4 HOH HOH . 
H 4 HOH A 4 304 9 HOH HOH . 
H 4 HOH A 5 305 10 HOH HOH . 
H 4 HOH A 6 306 11 HOH HOH . 
H 4 HOH A 7 307 12 HOH HOH . 
H 4 HOH A 8 308 16 HOH HOH . 
H 4 HOH A 9 309 18 HOH HOH . 
H 4 HOH A 10 310 19 HOH HOH . 
H 4 HOH A 11 311 20 HOH HOH . 
H 4 HOH A 12 312 21 HOH HOH . 
H 4 HOH A 13 313 23 HOH HOH . 
H 4 HOH A 14 314 32 HOH HOH . 
H 4 HOH A 15 315 37 HOH HOH . 
H 4 HOH A 16 316 39 HOH HOH . 
H 4 HOH A 17 317 40 HOH HOH . 
H 4 HOH A 18 318 42 HOH HOH . 
H 4 HOH A 19 319 43 HOH HOH . 
H 4 HOH A 20 320 44 HOH HOH . 
H 4 HOH A 21 321 45 HOH HOH . 
H 4 HOH A 22 322 47 HOH HOH . 
H 4 HOH A 23 323 48 HOH HOH . 
H 4 HOH A 24 324 51 HOH HOH . 
H 4 HOH A 25 325 52 HOH HOH . 
H 4 HOH A 26 326 53 HOH HOH . 
H 4 HOH A 27 327 55 HOH HOH . 
H 4 HOH A 28 328 56 HOH HOH . 
H 4 HOH A 29 329 57 HOH HOH . 
H 4 HOH A 30 330 60 HOH HOH . 
H 4 HOH A 31 331 62 HOH HOH . 
H 4 HOH A 32 332 63 HOH HOH . 
H 4 HOH A 33 333 64 HOH HOH . 
H 4 HOH A 34 334 65 HOH HOH . 
H 4 HOH A 35 335 69 HOH HOH . 
H 4 HOH A 36 336 71 HOH HOH . 
H 4 HOH A 37 337 73 HOH HOH . 
H 4 HOH A 38 338 77 HOH HOH . 
H 4 HOH A 39 339 80 HOH HOH . 
H 4 HOH A 40 340 83 HOH HOH . 
H 4 HOH A 41 341 85 HOH HOH . 
H 4 HOH A 42 342 87 HOH HOH . 
H 4 HOH A 43 343 89 HOH HOH . 
H 4 HOH A 44 344 93 HOH HOH . 
H 4 HOH A 45 345 94 HOH HOH . 
H 4 HOH A 46 346 96 HOH HOH . 
H 4 HOH A 47 347 99 HOH HOH . 
H 4 HOH A 48 348 101 HOH HOH . 
H 4 HOH A 49 349 107 HOH HOH . 
H 4 HOH A 50 350 108 HOH HOH . 
H 4 HOH A 51 351 111 HOH HOH . 
H 4 HOH A 52 352 113 HOH HOH . 
H 4 HOH A 53 353 114 HOH HOH . 
H 4 HOH A 54 354 115 HOH HOH . 
H 4 HOH A 55 355 116 HOH HOH . 
H 4 HOH A 56 356 117 HOH HOH . 
H 4 HOH A 57 357 118 HOH HOH . 
H 4 HOH A 58 358 119 HOH HOH . 
H 4 HOH A 59 359 120 HOH HOH . 
H 4 HOH A 60 360 124 HOH HOH . 
H 4 HOH A 61 361 126 HOH HOH . 
H 4 HOH A 62 362 128 HOH HOH . 
H 4 HOH A 63 363 130 HOH HOH . 
H 4 HOH A 64 364 131 HOH HOH . 
H 4 HOH A 65 365 132 HOH HOH . 
H 4 HOH A 66 366 134 HOH HOH . 
H 4 HOH A 67 367 136 HOH HOH . 
H 4 HOH A 68 368 138 HOH HOH . 
H 4 HOH A 69 369 139 HOH HOH . 
H 4 HOH A 70 370 141 HOH HOH . 
H 4 HOH A 71 371 142 HOH HOH . 
H 4 HOH A 72 372 143 HOH HOH . 
H 4 HOH A 73 373 145 HOH HOH . 
H 4 HOH A 74 374 147 HOH HOH . 
H 4 HOH A 75 375 150 HOH HOH . 
H 4 HOH A 76 376 151 HOH HOH . 
H 4 HOH A 77 377 152 HOH HOH . 
H 4 HOH A 78 378 153 HOH HOH . 
H 4 HOH A 79 379 154 HOH HOH . 
H 4 HOH A 80 380 156 HOH HOH . 
H 4 HOH A 81 381 160 HOH HOH . 
H 4 HOH A 82 382 161 HOH HOH . 
H 4 HOH A 83 383 162 HOH HOH . 
H 4 HOH A 84 384 165 HOH HOH . 
H 4 HOH A 85 385 166 HOH HOH . 
H 4 HOH A 86 386 168 HOH HOH . 
H 4 HOH A 87 387 169 HOH HOH . 
H 4 HOH A 88 388 170 HOH HOH . 
H 4 HOH A 89 389 171 HOH HOH . 
H 4 HOH A 90 390 173 HOH HOH . 
H 4 HOH A 91 391 177 HOH HOH . 
H 4 HOH A 92 392 178 HOH HOH . 
H 4 HOH A 93 393 180 HOH HOH . 
H 4 HOH A 94 394 184 HOH HOH . 
H 4 HOH A 95 395 186 HOH HOH . 
H 4 HOH A 96 396 189 HOH HOH . 
H 4 HOH A 97 397 191 HOH HOH . 
H 4 HOH A 98 398 194 HOH HOH . 
H 4 HOH A 99 399 195 HOH HOH . 
H 4 HOH A 100 400 197 HOH HOH . 
H 4 HOH A 101 401 200 HOH HOH . 
H 4 HOH A 102 402 203 HOH HOH . 
H 4 HOH A 103 403 204 HOH HOH . 
H 4 HOH A 104 404 206 HOH HOH . 
H 4 HOH A 105 405 207 HOH HOH . 
H 4 HOH A 106 406 217 HOH HOH . 
H 4 HOH A 107 407 218 HOH HOH . 
H 4 HOH A 108 408 219 HOH HOH . 
H 4 HOH A 109 409 220 HOH HOH . 
H 4 HOH A 110 410 221 HOH HOH . 
H 4 HOH A 111 411 223 HOH HOH . 
H 4 HOH A 112 412 225 HOH HOH . 
H 4 HOH A 113 413 226 HOH HOH . 
H 4 HOH A 114 414 230 HOH HOH . 
H 4 HOH A 115 415 233 HOH HOH . 
H 4 HOH A 116 416 234 HOH HOH . 
H 4 HOH A 117 417 236 HOH HOH . 
H 4 HOH A 118 418 238 HOH HOH . 
H 4 HOH A 119 419 239 HOH HOH . 
H 4 HOH A 120 420 242 HOH HOH . 
H 4 HOH A 121 421 243 HOH HOH . 
H 4 HOH A 122 422 244 HOH HOH . 
H 4 HOH A 123 423 245 HOH HOH . 
H 4 HOH A 124 424 247 HOH HOH . 
H 4 HOH A 125 425 248 HOH HOH . 
H 4 HOH A 126 426 251 HOH HOH . 
H 4 HOH A 127 427 253 HOH HOH . 
H 4 HOH A 128 428 256 HOH HOH . 
H 4 HOH A 129 429 259 HOH HOH . 
I 4 HOH C 1 301 1 HOH HOH . 
I 4 HOH C 2 302 5 HOH HOH . 
I 4 HOH C 3 303 7 HOH HOH . 
I 4 HOH C 4 304 8 HOH HOH . 
I 4 HOH C 5 305 13 HOH HOH . 
I 4 HOH C 6 306 14 HOH HOH . 
I 4 HOH C 7 307 15 HOH HOH . 
I 4 HOH C 8 308 22 HOH HOH . 
I 4 HOH C 9 309 24 HOH HOH . 
I 4 HOH C 10 310 25 HOH HOH . 
I 4 HOH C 11 311 26 HOH HOH . 
I 4 HOH C 12 312 27 HOH HOH . 
I 4 HOH C 13 313 28 HOH HOH . 
I 4 HOH C 14 314 29 HOH HOH . 
I 4 HOH C 15 315 30 HOH HOH . 
I 4 HOH C 16 316 33 HOH HOH . 
I 4 HOH C 17 317 34 HOH HOH . 
I 4 HOH C 18 318 35 HOH HOH . 
I 4 HOH C 19 319 36 HOH HOH . 
I 4 HOH C 20 320 38 HOH HOH . 
I 4 HOH C 21 321 41 HOH HOH . 
I 4 HOH C 22 322 46 HOH HOH . 
I 4 HOH C 23 323 49 HOH HOH . 
I 4 HOH C 24 324 50 HOH HOH . 
I 4 HOH C 25 325 54 HOH HOH . 
I 4 HOH C 26 326 58 HOH HOH . 
I 4 HOH C 27 327 61 HOH HOH . 
I 4 HOH C 28 328 66 HOH HOH . 
I 4 HOH C 29 329 67 HOH HOH . 
I 4 HOH C 30 330 68 HOH HOH . 
I 4 HOH C 31 331 70 HOH HOH . 
I 4 HOH C 32 332 72 HOH HOH . 
I 4 HOH C 33 333 74 HOH HOH . 
I 4 HOH C 34 334 75 HOH HOH . 
I 4 HOH C 35 335 78 HOH HOH . 
I 4 HOH C 36 336 79 HOH HOH . 
I 4 HOH C 37 337 82 HOH HOH . 
I 4 HOH C 38 338 86 HOH HOH . 
I 4 HOH C 39 339 88 HOH HOH . 
I 4 HOH C 40 340 91 HOH HOH . 
I 4 HOH C 41 341 92 HOH HOH . 
I 4 HOH C 42 342 95 HOH HOH . 
I 4 HOH C 43 343 97 HOH HOH . 
I 4 HOH C 44 344 98 HOH HOH . 
I 4 HOH C 45 345 100 HOH HOH . 
I 4 HOH C 46 346 102 HOH HOH . 
I 4 HOH C 47 347 103 HOH HOH . 
I 4 HOH C 48 348 104 HOH HOH . 
I 4 HOH C 49 349 105 HOH HOH . 
I 4 HOH C 50 350 106 HOH HOH . 
I 4 HOH C 51 351 109 HOH HOH . 
I 4 HOH C 52 352 110 HOH HOH . 
I 4 HOH C 53 353 112 HOH HOH . 
I 4 HOH C 54 354 121 HOH HOH . 
I 4 HOH C 55 355 122 HOH HOH . 
I 4 HOH C 56 356 123 HOH HOH . 
I 4 HOH C 57 357 125 HOH HOH . 
I 4 HOH C 58 358 127 HOH HOH . 
I 4 HOH C 59 359 129 HOH HOH . 
I 4 HOH C 60 360 133 HOH HOH . 
I 4 HOH C 61 361 135 HOH HOH . 
I 4 HOH C 62 362 137 HOH HOH . 
I 4 HOH C 63 363 144 HOH HOH . 
I 4 HOH C 64 364 146 HOH HOH . 
I 4 HOH C 65 365 148 HOH HOH . 
I 4 HOH C 66 366 149 HOH HOH . 
I 4 HOH C 67 367 155 HOH HOH . 
I 4 HOH C 68 368 157 HOH HOH . 
I 4 HOH C 69 369 158 HOH HOH . 
I 4 HOH C 70 370 159 HOH HOH . 
I 4 HOH C 71 371 163 HOH HOH . 
I 4 HOH C 72 372 164 HOH HOH . 
I 4 HOH C 73 373 167 HOH HOH . 
I 4 HOH C 74 374 172 HOH HOH . 
I 4 HOH C 75 375 174 HOH HOH . 
I 4 HOH C 76 376 175 HOH HOH . 
I 4 HOH C 77 377 176 HOH HOH . 
I 4 HOH C 78 378 179 HOH HOH . 
I 4 HOH C 79 379 181 HOH HOH . 
I 4 HOH C 80 380 182 HOH HOH . 
I 4 HOH C 81 381 183 HOH HOH . 
I 4 HOH C 82 382 185 HOH HOH . 
I 4 HOH C 83 383 187 HOH HOH . 
I 4 HOH C 84 384 188 HOH HOH . 
I 4 HOH C 85 385 190 HOH HOH . 
I 4 HOH C 86 386 192 HOH HOH . 
I 4 HOH C 87 387 193 HOH HOH . 
I 4 HOH C 88 388 196 HOH HOH . 
I 4 HOH C 89 389 198 HOH HOH . 
I 4 HOH C 90 390 199 HOH HOH . 
I 4 HOH C 91 391 201 HOH HOH . 
I 4 HOH C 92 392 202 HOH HOH . 
I 4 HOH C 93 393 208 HOH HOH . 
I 4 HOH C 94 394 209 HOH HOH . 
I 4 HOH C 95 395 210 HOH HOH . 
I 4 HOH C 96 396 211 HOH HOH . 
I 4 HOH C 97 397 212 HOH HOH . 
I 4 HOH C 98 398 213 HOH HOH . 
I 4 HOH C 99 399 214 HOH HOH . 
I 4 HOH C 100 400 215 HOH HOH . 
I 4 HOH C 101 401 216 HOH HOH . 
I 4 HOH C 102 402 222 HOH HOH . 
I 4 HOH C 103 403 224 HOH HOH . 
I 4 HOH C 104 404 227 HOH HOH . 
I 4 HOH C 105 405 228 HOH HOH . 
I 4 HOH C 106 406 229 HOH HOH . 
I 4 HOH C 107 407 231 HOH HOH . 
I 4 HOH C 108 408 232 HOH HOH . 
I 4 HOH C 109 409 235 HOH HOH . 
I 4 HOH C 110 410 237 HOH HOH . 
I 4 HOH C 111 411 240 HOH HOH . 
I 4 HOH C 112 412 241 HOH HOH . 
I 4 HOH C 113 413 246 HOH HOH . 
I 4 HOH C 114 414 249 HOH HOH . 
I 4 HOH C 115 415 250 HOH HOH . 
I 4 HOH C 116 416 252 HOH HOH . 
I 4 HOH C 117 417 254 HOH HOH . 
I 4 HOH C 118 418 255 HOH HOH . 
I 4 HOH C 119 419 257 HOH HOH . 
I 4 HOH C 120 420 258 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . G 3 -3.845 26.434 18.739 1 28.9 ? C1 PEG 202 C 1 
HETATM 2 O O1 PEG . . . G 3 -2.678 27.097 18.234 1 28.32 ? O1 PEG 202 C 1 
HETATM 3 C C2 PEG . . . G 3 -5.066 26.545 17.828 1 26.46 ? C2 PEG 202 C 1 
HETATM 4 O O2 PEG . . . G 3 -6.031 25.581 18.257 1 34.41 ? O2 PEG 202 C 1 
HETATM 5 C C3 PEG . . . G 3 -6.425 24.623 17.278 1 24.06 ? C3 PEG 202 C 1 
HETATM 6 C C4 PEG . . . G 3 -7.574 23.725 17.767 1 29.6 ? C4 PEG 202 C 1 
HETATM 7 O O4 PEG . . . G 3 -7.646 23.568 19.197 1 33.27 ? O4 PEG 202 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#