data_4DY6 # _model_server_result.job_id u0hrH87F3jcxjX9lceR1jQ _model_server_result.datetime_utc '2024-11-13 19:04:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4DY6 # _exptl.entry_id 4DY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DY6 _cell.length_a 63.1 _cell.length_b 75.73 _cell.length_c 118.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.1 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.1 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 151 n n C1 O2 CIT sing 152 n n C1 C2 CIT sing 153 n n O2 HO2 CIT sing 154 n n C2 C3 CIT sing 155 n n C2 H21 CIT sing 156 n n C2 H22 CIT sing 157 n n C3 O7 CIT sing 158 n n C3 C4 CIT sing 159 n n C3 C6 CIT sing 160 n n O7 HO7 CIT sing 161 n n C4 C5 CIT sing 162 n n C4 H41 CIT sing 163 n n C4 H42 CIT sing 164 n n C5 O3 CIT doub 165 n n C5 O4 CIT sing 166 n n O4 HO4 CIT sing 167 n n C6 O5 CIT doub 168 n n C6 O6 CIT sing 169 n n O6 HO6 CIT sing 170 n n # _atom_sites.entry_id 4DY6 _atom_sites.fract_transf_matrix[1][1] 0.015848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A22 A 1 301 273 A22 A22 . C 3 CIT A 1 302 274 CIT CIT . D 4 HOH A 1 401 275 HOH HOH . D 4 HOH A 2 402 276 HOH HOH . D 4 HOH A 3 403 277 HOH HOH . D 4 HOH A 4 404 278 HOH HOH . D 4 HOH A 5 405 279 HOH HOH . D 4 HOH A 6 406 280 HOH HOH . D 4 HOH A 7 407 281 HOH HOH . D 4 HOH A 8 408 282 HOH HOH . D 4 HOH A 9 409 283 HOH HOH . D 4 HOH A 10 410 284 HOH HOH . D 4 HOH A 11 411 285 HOH HOH . D 4 HOH A 12 412 286 HOH HOH . D 4 HOH A 13 413 287 HOH HOH . D 4 HOH A 14 414 288 HOH HOH . D 4 HOH A 15 415 289 HOH HOH . D 4 HOH A 16 416 290 HOH HOH . D 4 HOH A 17 417 291 HOH HOH . D 4 HOH A 18 418 292 HOH HOH . D 4 HOH A 19 419 293 HOH HOH . D 4 HOH A 20 420 294 HOH HOH . D 4 HOH A 21 421 296 HOH HOH . D 4 HOH A 22 422 297 HOH HOH . D 4 HOH A 23 423 298 HOH HOH . D 4 HOH A 24 424 299 HOH HOH . D 4 HOH A 25 425 300 HOH HOH . D 4 HOH A 26 426 301 HOH HOH . D 4 HOH A 27 427 302 HOH HOH . D 4 HOH A 28 428 303 HOH HOH . D 4 HOH A 29 429 304 HOH HOH . D 4 HOH A 30 430 305 HOH HOH . D 4 HOH A 31 431 306 HOH HOH . D 4 HOH A 32 432 307 HOH HOH . D 4 HOH A 33 433 309 HOH HOH . D 4 HOH A 34 434 310 HOH HOH . D 4 HOH A 35 435 311 HOH HOH . D 4 HOH A 36 436 312 HOH HOH . D 4 HOH A 37 437 313 HOH HOH . D 4 HOH A 38 438 314 HOH HOH . D 4 HOH A 39 439 315 HOH HOH . D 4 HOH A 40 440 316 HOH HOH . D 4 HOH A 41 441 317 HOH HOH . D 4 HOH A 42 442 318 HOH HOH . D 4 HOH A 43 443 319 HOH HOH . D 4 HOH A 44 444 320 HOH HOH . D 4 HOH A 45 445 321 HOH HOH . D 4 HOH A 46 446 322 HOH HOH . D 4 HOH A 47 447 323 HOH HOH . D 4 HOH A 48 448 324 HOH HOH . D 4 HOH A 49 449 325 HOH HOH . D 4 HOH A 50 450 326 HOH HOH . D 4 HOH A 51 451 327 HOH HOH . D 4 HOH A 52 452 328 HOH HOH . D 4 HOH A 53 453 329 HOH HOH . D 4 HOH A 54 454 330 HOH HOH . D 4 HOH A 55 455 331 HOH HOH . D 4 HOH A 56 456 332 HOH HOH . D 4 HOH A 57 457 333 HOH HOH . D 4 HOH A 58 458 334 HOH HOH . D 4 HOH A 59 459 335 HOH HOH . D 4 HOH A 60 460 336 HOH HOH . D 4 HOH A 61 461 337 HOH HOH . D 4 HOH A 62 462 338 HOH HOH . D 4 HOH A 63 463 339 HOH HOH . D 4 HOH A 64 464 340 HOH HOH . D 4 HOH A 65 465 341 HOH HOH . D 4 HOH A 66 466 342 HOH HOH . D 4 HOH A 67 467 343 HOH HOH . D 4 HOH A 68 468 344 HOH HOH . D 4 HOH A 69 469 345 HOH HOH . D 4 HOH A 70 470 346 HOH HOH . D 4 HOH A 71 471 347 HOH HOH . D 4 HOH A 72 472 348 HOH HOH . D 4 HOH A 73 473 349 HOH HOH . D 4 HOH A 74 474 350 HOH HOH . D 4 HOH A 75 475 351 HOH HOH . D 4 HOH A 76 476 352 HOH HOH . D 4 HOH A 77 477 353 HOH HOH . D 4 HOH A 78 478 354 HOH HOH . D 4 HOH A 79 479 355 HOH HOH . D 4 HOH A 80 480 356 HOH HOH . D 4 HOH A 81 481 357 HOH HOH . D 4 HOH A 82 482 358 HOH HOH . D 4 HOH A 83 483 359 HOH HOH . D 4 HOH A 84 484 360 HOH HOH . D 4 HOH A 85 485 361 HOH HOH . D 4 HOH A 86 486 362 HOH HOH . D 4 HOH A 87 487 363 HOH HOH . D 4 HOH A 88 488 364 HOH HOH . D 4 HOH A 89 489 365 HOH HOH . D 4 HOH A 90 490 366 HOH HOH . D 4 HOH A 91 491 367 HOH HOH . D 4 HOH A 92 492 370 HOH HOH . D 4 HOH A 93 493 371 HOH HOH . D 4 HOH A 94 494 373 HOH HOH . D 4 HOH A 95 495 381 HOH HOH . D 4 HOH A 96 496 382 HOH HOH . D 4 HOH A 97 497 383 HOH HOH . D 4 HOH A 98 498 384 HOH HOH . D 4 HOH A 99 499 385 HOH HOH . D 4 HOH A 100 500 386 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 32.04 24.104 14.278 1 79.42 ? C1 CIT 302 A 1 HETATM 2 O O1 CIT . . . C 3 31.612 22.977 13.959 1 72.01 ? O1 CIT 302 A 1 HETATM 3 O O2 CIT . . . C 3 33.254 24.209 14.576 1 79.66 ? O2 CIT 302 A 1 HETATM 4 C C2 CIT . . . C 3 31.148 25.335 14.326 1 83.63 ? C2 CIT 302 A 1 HETATM 5 C C3 CIT . . . C 3 29.804 25.114 15.031 1 86.45 ? C3 CIT 302 A 1 HETATM 6 O O7 CIT . . . C 3 30.009 24.397 16.274 1 86.97 ? O7 CIT 302 A 1 HETATM 7 C C4 CIT . . . C 3 29.098 26.446 15.326 0.8 88.6 ? C4 CIT 302 A 1 HETATM 8 C C5 CIT . . . C 3 29.549 27.097 16.628 0.8 90.5 ? C5 CIT 302 A 1 HETATM 9 O O3 CIT . . . C 3 30.272 28.119 16.625 0.6 91.05 ? O3 CIT 302 A 1 HETATM 10 O O4 CIT . . . C 3 29.201 26.635 17.738 0.6 90.37 ? O4 CIT 302 A 1 HETATM 11 C C6 CIT . . . C 3 28.931 24.253 14.13 1 86.6 ? C6 CIT 302 A 1 HETATM 12 O O5 CIT . . . C 3 28.58 24.607 12.979 1 86.49 ? O5 CIT 302 A 1 HETATM 13 O O6 CIT . . . C 3 28.563 23.13 14.527 1 88.1 ? O6 CIT 302 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #