data_4DYM # _model_server_result.job_id zgGcVsc8mwImHJWNKgrfxw _model_server_result.datetime_utc '2024-10-16 23:33:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4DYM # _exptl.entry_id 4DYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DYM _cell.length_a 57.8 _cell.length_b 81.86 _cell.length_c 140.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 70.195 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 347 n n S O2 SO4 doub 348 n n S O3 SO4 sing 349 n n S O4 SO4 sing 350 n n # _atom_sites.entry_id 4DYM _atom_sites.fract_transf_matrix[1][1] 0.017301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 1 SO4 SO4 . C 2 SO4 A 1 502 2 SO4 SO4 . D 3 IYZ A 1 503 1 IYZ DRG . E 4 GOL A 1 504 1 GOL GOL . F 4 GOL A 1 505 2 GOL GOL . G 4 GOL A 1 506 3 GOL GOL . H 4 GOL A 1 507 4 GOL GOL . I 5 HOH A 1 601 1 HOH HOH . I 5 HOH A 2 602 2 HOH HOH . I 5 HOH A 3 603 3 HOH HOH . I 5 HOH A 4 604 4 HOH HOH . I 5 HOH A 5 605 5 HOH HOH . I 5 HOH A 6 606 7 HOH HOH . I 5 HOH A 7 607 8 HOH HOH . I 5 HOH A 8 608 9 HOH HOH . I 5 HOH A 9 609 11 HOH HOH . I 5 HOH A 10 610 12 HOH HOH . I 5 HOH A 11 611 13 HOH HOH . I 5 HOH A 12 612 15 HOH HOH . I 5 HOH A 13 613 16 HOH HOH . I 5 HOH A 14 614 18 HOH HOH . I 5 HOH A 15 615 19 HOH HOH . I 5 HOH A 16 616 20 HOH HOH . I 5 HOH A 17 617 21 HOH HOH . I 5 HOH A 18 618 22 HOH HOH . I 5 HOH A 19 619 23 HOH HOH . I 5 HOH A 20 620 25 HOH HOH . I 5 HOH A 21 621 26 HOH HOH . I 5 HOH A 22 622 27 HOH HOH . I 5 HOH A 23 623 30 HOH HOH . I 5 HOH A 24 624 32 HOH HOH . I 5 HOH A 25 625 33 HOH HOH . I 5 HOH A 26 626 36 HOH HOH . I 5 HOH A 27 627 37 HOH HOH . I 5 HOH A 28 628 38 HOH HOH . I 5 HOH A 29 629 40 HOH HOH . I 5 HOH A 30 630 41 HOH HOH . I 5 HOH A 31 631 44 HOH HOH . I 5 HOH A 32 632 45 HOH HOH . I 5 HOH A 33 633 48 HOH HOH . I 5 HOH A 34 634 50 HOH HOH . I 5 HOH A 35 635 51 HOH HOH . I 5 HOH A 36 636 52 HOH HOH . I 5 HOH A 37 637 53 HOH HOH . I 5 HOH A 38 638 54 HOH HOH . I 5 HOH A 39 639 55 HOH HOH . I 5 HOH A 40 640 57 HOH HOH . I 5 HOH A 41 641 58 HOH HOH . I 5 HOH A 42 642 59 HOH HOH . I 5 HOH A 43 643 60 HOH HOH . I 5 HOH A 44 644 62 HOH HOH . I 5 HOH A 45 645 64 HOH HOH . I 5 HOH A 46 646 65 HOH HOH . I 5 HOH A 47 647 66 HOH HOH . I 5 HOH A 48 648 67 HOH HOH . I 5 HOH A 49 649 68 HOH HOH . I 5 HOH A 50 650 69 HOH HOH . I 5 HOH A 51 651 70 HOH HOH . I 5 HOH A 52 652 71 HOH HOH . I 5 HOH A 53 653 72 HOH HOH . I 5 HOH A 54 654 73 HOH HOH . I 5 HOH A 55 655 75 HOH HOH . I 5 HOH A 56 656 76 HOH HOH . I 5 HOH A 57 657 78 HOH HOH . I 5 HOH A 58 658 79 HOH HOH . I 5 HOH A 59 659 80 HOH HOH . I 5 HOH A 60 660 81 HOH HOH . I 5 HOH A 61 661 82 HOH HOH . I 5 HOH A 62 662 84 HOH HOH . I 5 HOH A 63 663 85 HOH HOH . I 5 HOH A 64 664 86 HOH HOH . I 5 HOH A 65 665 87 HOH HOH . I 5 HOH A 66 666 88 HOH HOH . I 5 HOH A 67 667 89 HOH HOH . I 5 HOH A 68 668 90 HOH HOH . I 5 HOH A 69 669 91 HOH HOH . I 5 HOH A 70 670 92 HOH HOH . I 5 HOH A 71 671 93 HOH HOH . I 5 HOH A 72 672 94 HOH HOH . I 5 HOH A 73 673 96 HOH HOH . I 5 HOH A 74 674 97 HOH HOH . I 5 HOH A 75 675 98 HOH HOH . I 5 HOH A 76 676 100 HOH HOH . I 5 HOH A 77 677 101 HOH HOH . I 5 HOH A 78 678 102 HOH HOH . I 5 HOH A 79 679 103 HOH HOH . I 5 HOH A 80 680 104 HOH HOH . I 5 HOH A 81 681 105 HOH HOH . I 5 HOH A 82 682 106 HOH HOH . I 5 HOH A 83 683 107 HOH HOH . I 5 HOH A 84 684 108 HOH HOH . I 5 HOH A 85 685 109 HOH HOH . I 5 HOH A 86 686 110 HOH HOH . I 5 HOH A 87 687 111 HOH HOH . I 5 HOH A 88 688 112 HOH HOH . I 5 HOH A 89 689 113 HOH HOH . I 5 HOH A 90 690 114 HOH HOH . I 5 HOH A 91 691 115 HOH HOH . I 5 HOH A 92 692 116 HOH HOH . I 5 HOH A 93 693 117 HOH HOH . I 5 HOH A 94 694 118 HOH HOH . I 5 HOH A 95 695 119 HOH HOH . I 5 HOH A 96 696 120 HOH HOH . I 5 HOH A 97 697 121 HOH HOH . I 5 HOH A 98 698 122 HOH HOH . I 5 HOH A 99 699 123 HOH HOH . I 5 HOH A 100 700 124 HOH HOH . I 5 HOH A 101 701 125 HOH HOH . I 5 HOH A 102 702 126 HOH HOH . I 5 HOH A 103 703 127 HOH HOH . I 5 HOH A 104 704 128 HOH HOH . I 5 HOH A 105 705 129 HOH HOH . I 5 HOH A 106 706 130 HOH HOH . I 5 HOH A 107 707 131 HOH HOH . I 5 HOH A 108 708 132 HOH HOH . I 5 HOH A 109 709 133 HOH HOH . I 5 HOH A 110 710 134 HOH HOH . I 5 HOH A 111 711 135 HOH HOH . I 5 HOH A 112 712 136 HOH HOH . I 5 HOH A 113 713 137 HOH HOH . I 5 HOH A 114 714 138 HOH HOH . I 5 HOH A 115 715 139 HOH HOH . I 5 HOH A 116 716 140 HOH HOH . I 5 HOH A 117 717 142 HOH HOH . I 5 HOH A 118 718 143 HOH HOH . I 5 HOH A 119 719 144 HOH HOH . I 5 HOH A 120 720 145 HOH HOH . I 5 HOH A 121 721 146 HOH HOH . I 5 HOH A 122 722 147 HOH HOH . I 5 HOH A 123 723 148 HOH HOH . I 5 HOH A 124 724 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 -8.905 -7.603 9.066 1 51.64 ? S SO4 501 A 1 HETATM 2 O O1 SO4 . . . B 2 -8.952 -9.059 9.292 1 42.98 ? O1 SO4 501 A 1 HETATM 3 O O2 SO4 . . . B 2 -8.804 -7.832 7.605 1 49.06 ? O2 SO4 501 A 1 HETATM 4 O O3 SO4 . . . B 2 -10.194 -7.72 9.787 1 58.76 ? O3 SO4 501 A 1 HETATM 5 O O4 SO4 . . . B 2 -7.637 -7.536 9.832 1 56.9 ? O4 SO4 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #