data_4DYM # _model_server_result.job_id gFo-7ERUz33SeJ3H8n19mQ _model_server_result.datetime_utc '2024-10-16 23:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4DYM # _exptl.entry_id 4DYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.362 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3-{6-[(CYCLOPROPYLMETHYL)AMINO]IMIDAZO[1,2-B]PYRIDAZIN-3-YL}PHENYL)ETHANONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DYM _cell.length_a 57.8 _cell.length_b 81.86 _cell.length_c 140.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 70.195 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H18 N4 O' _chem_comp.formula_weight 306.362 _chem_comp.id IYZ _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3-{6-[(CYCLOPROPYLMETHYL)AMINO]IMIDAZO[1,2-B]PYRIDAZIN-3-YL}PHENYL)ETHANONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'IMIDAZOPYRIDAZIN 1' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ CAK IYZ sing 186 n n CAJ CAV IYZ sing 187 n n CAJ HAJ1 IYZ sing 188 n n CAJ HAJ2 IYZ sing 189 n n CAK CAV IYZ sing 190 n n CAK HAK1 IYZ sing 191 n n CAK HAK2 IYZ sing 192 n n CAV CAL IYZ sing 193 n n CAV HAV IYZ sing 194 n n CAL NAO IYZ sing 195 n n CAL HAL1 IYZ sing 196 n n CAL HAL2 IYZ sing 197 n n NAO CAS IYZ sing 198 n n NAO HAO IYZ sing 199 n n CAS CAF IYZ sing 200 n y CAS NAN IYZ doub 201 n y CAF CAG IYZ doub 202 n y CAF HAF IYZ sing 203 n n CAG CAU IYZ sing 204 n y CAG HAG IYZ sing 205 n n NAN NAW IYZ sing 206 n y NAW CAU IYZ sing 207 n y NAW CAT IYZ sing 208 n y CAU NAM IYZ doub 209 n y NAM CAH IYZ sing 210 n y CAH CAT IYZ doub 211 n y CAH HAH IYZ sing 212 n n CAT CAR IYZ sing 213 n y CAR CAI IYZ doub 214 n y CAR CAE IYZ sing 215 n y CAI CAQ IYZ sing 216 n y CAI HAI IYZ sing 217 n n CAE CAC IYZ doub 218 n y CAE HAE IYZ sing 219 n n CAC CAD IYZ sing 220 n y CAC HAC IYZ sing 221 n n CAD CAQ IYZ doub 222 n y CAD HAD IYZ sing 223 n n CAQ CAP IYZ sing 224 n n CAP CAA IYZ sing 225 n n CAP OAB IYZ doub 226 n n CAA HAA1 IYZ sing 227 n n CAA HAA2 IYZ sing 228 n n CAA HAA3 IYZ sing 229 n n # _atom_sites.entry_id 4DYM _atom_sites.fract_transf_matrix[1][1] 0.017301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 1 SO4 SO4 . C 2 SO4 A 1 502 2 SO4 SO4 . D 3 IYZ A 1 503 1 IYZ DRG . E 4 GOL A 1 504 1 GOL GOL . F 4 GOL A 1 505 2 GOL GOL . G 4 GOL A 1 506 3 GOL GOL . H 4 GOL A 1 507 4 GOL GOL . I 5 HOH A 1 601 1 HOH HOH . I 5 HOH A 2 602 2 HOH HOH . I 5 HOH A 3 603 3 HOH HOH . I 5 HOH A 4 604 4 HOH HOH . I 5 HOH A 5 605 5 HOH HOH . I 5 HOH A 6 606 7 HOH HOH . I 5 HOH A 7 607 8 HOH HOH . I 5 HOH A 8 608 9 HOH HOH . I 5 HOH A 9 609 11 HOH HOH . I 5 HOH A 10 610 12 HOH HOH . I 5 HOH A 11 611 13 HOH HOH . I 5 HOH A 12 612 15 HOH HOH . I 5 HOH A 13 613 16 HOH HOH . I 5 HOH A 14 614 18 HOH HOH . I 5 HOH A 15 615 19 HOH HOH . I 5 HOH A 16 616 20 HOH HOH . I 5 HOH A 17 617 21 HOH HOH . I 5 HOH A 18 618 22 HOH HOH . I 5 HOH A 19 619 23 HOH HOH . I 5 HOH A 20 620 25 HOH HOH . I 5 HOH A 21 621 26 HOH HOH . I 5 HOH A 22 622 27 HOH HOH . I 5 HOH A 23 623 30 HOH HOH . I 5 HOH A 24 624 32 HOH HOH . I 5 HOH A 25 625 33 HOH HOH . I 5 HOH A 26 626 36 HOH HOH . I 5 HOH A 27 627 37 HOH HOH . I 5 HOH A 28 628 38 HOH HOH . I 5 HOH A 29 629 40 HOH HOH . I 5 HOH A 30 630 41 HOH HOH . I 5 HOH A 31 631 44 HOH HOH . I 5 HOH A 32 632 45 HOH HOH . I 5 HOH A 33 633 48 HOH HOH . I 5 HOH A 34 634 50 HOH HOH . I 5 HOH A 35 635 51 HOH HOH . I 5 HOH A 36 636 52 HOH HOH . I 5 HOH A 37 637 53 HOH HOH . I 5 HOH A 38 638 54 HOH HOH . I 5 HOH A 39 639 55 HOH HOH . I 5 HOH A 40 640 57 HOH HOH . I 5 HOH A 41 641 58 HOH HOH . I 5 HOH A 42 642 59 HOH HOH . I 5 HOH A 43 643 60 HOH HOH . I 5 HOH A 44 644 62 HOH HOH . I 5 HOH A 45 645 64 HOH HOH . I 5 HOH A 46 646 65 HOH HOH . I 5 HOH A 47 647 66 HOH HOH . I 5 HOH A 48 648 67 HOH HOH . I 5 HOH A 49 649 68 HOH HOH . I 5 HOH A 50 650 69 HOH HOH . I 5 HOH A 51 651 70 HOH HOH . I 5 HOH A 52 652 71 HOH HOH . I 5 HOH A 53 653 72 HOH HOH . I 5 HOH A 54 654 73 HOH HOH . I 5 HOH A 55 655 75 HOH HOH . I 5 HOH A 56 656 76 HOH HOH . I 5 HOH A 57 657 78 HOH HOH . I 5 HOH A 58 658 79 HOH HOH . I 5 HOH A 59 659 80 HOH HOH . I 5 HOH A 60 660 81 HOH HOH . I 5 HOH A 61 661 82 HOH HOH . I 5 HOH A 62 662 84 HOH HOH . I 5 HOH A 63 663 85 HOH HOH . I 5 HOH A 64 664 86 HOH HOH . I 5 HOH A 65 665 87 HOH HOH . I 5 HOH A 66 666 88 HOH HOH . I 5 HOH A 67 667 89 HOH HOH . I 5 HOH A 68 668 90 HOH HOH . I 5 HOH A 69 669 91 HOH HOH . I 5 HOH A 70 670 92 HOH HOH . I 5 HOH A 71 671 93 HOH HOH . I 5 HOH A 72 672 94 HOH HOH . I 5 HOH A 73 673 96 HOH HOH . I 5 HOH A 74 674 97 HOH HOH . I 5 HOH A 75 675 98 HOH HOH . I 5 HOH A 76 676 100 HOH HOH . I 5 HOH A 77 677 101 HOH HOH . I 5 HOH A 78 678 102 HOH HOH . I 5 HOH A 79 679 103 HOH HOH . I 5 HOH A 80 680 104 HOH HOH . I 5 HOH A 81 681 105 HOH HOH . I 5 HOH A 82 682 106 HOH HOH . I 5 HOH A 83 683 107 HOH HOH . I 5 HOH A 84 684 108 HOH HOH . I 5 HOH A 85 685 109 HOH HOH . I 5 HOH A 86 686 110 HOH HOH . I 5 HOH A 87 687 111 HOH HOH . I 5 HOH A 88 688 112 HOH HOH . I 5 HOH A 89 689 113 HOH HOH . I 5 HOH A 90 690 114 HOH HOH . I 5 HOH A 91 691 115 HOH HOH . I 5 HOH A 92 692 116 HOH HOH . I 5 HOH A 93 693 117 HOH HOH . I 5 HOH A 94 694 118 HOH HOH . I 5 HOH A 95 695 119 HOH HOH . I 5 HOH A 96 696 120 HOH HOH . I 5 HOH A 97 697 121 HOH HOH . I 5 HOH A 98 698 122 HOH HOH . I 5 HOH A 99 699 123 HOH HOH . I 5 HOH A 100 700 124 HOH HOH . I 5 HOH A 101 701 125 HOH HOH . I 5 HOH A 102 702 126 HOH HOH . I 5 HOH A 103 703 127 HOH HOH . I 5 HOH A 104 704 128 HOH HOH . I 5 HOH A 105 705 129 HOH HOH . I 5 HOH A 106 706 130 HOH HOH . I 5 HOH A 107 707 131 HOH HOH . I 5 HOH A 108 708 132 HOH HOH . I 5 HOH A 109 709 133 HOH HOH . I 5 HOH A 110 710 134 HOH HOH . I 5 HOH A 111 711 135 HOH HOH . I 5 HOH A 112 712 136 HOH HOH . I 5 HOH A 113 713 137 HOH HOH . I 5 HOH A 114 714 138 HOH HOH . I 5 HOH A 115 715 139 HOH HOH . I 5 HOH A 116 716 140 HOH HOH . I 5 HOH A 117 717 142 HOH HOH . I 5 HOH A 118 718 143 HOH HOH . I 5 HOH A 119 719 144 HOH HOH . I 5 HOH A 120 720 145 HOH HOH . I 5 HOH A 121 721 146 HOH HOH . I 5 HOH A 122 722 147 HOH HOH . I 5 HOH A 123 723 148 HOH HOH . I 5 HOH A 124 724 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ IYZ . . . D 3 -6.368 -19.302 14.081 1 36.4 ? CAJ IYZ 503 A 1 HETATM 2 C CAK IYZ . . . D 3 -6.83 -19.984 12.804 1 36.05 ? CAK IYZ 503 A 1 HETATM 3 C CAV IYZ . . . D 3 -5.355 -20.09 13.215 1 36.45 ? CAV IYZ 503 A 1 HETATM 4 C CAL IYZ . . . D 3 -4.888 -21.426 13.831 1 35.67 ? CAL IYZ 503 A 1 HETATM 5 N NAO IYZ . . . D 3 -5.374 -22.592 13.087 1 30.9 ? NAO IYZ 503 A 1 HETATM 6 C CAS IYZ . . . D 3 -5.616 -23.785 13.686 1 29.99 ? CAS IYZ 503 A 1 HETATM 7 C CAF IYZ . . . D 3 -5.661 -24.972 12.942 1 25.71 ? CAF IYZ 503 A 1 HETATM 8 C CAG IYZ . . . D 3 -5.927 -26.142 13.615 1 25.22 ? CAG IYZ 503 A 1 HETATM 9 N NAN IYZ . . . D 3 -5.827 -23.83 15.024 1 29.87 ? NAN IYZ 503 A 1 HETATM 10 N NAW IYZ . . . D 3 -6.096 -24.872 15.643 1 26.53 ? NAW IYZ 503 A 1 HETATM 11 C CAU IYZ . . . D 3 -6.154 -26.101 14.987 1 25.56 ? CAU IYZ 503 A 1 HETATM 12 N NAM IYZ . . . D 3 -6.457 -27.03 15.902 1 23.72 ? NAM IYZ 503 A 1 HETATM 13 C CAH IYZ . . . D 3 -6.523 -26.469 17.117 1 24.68 ? CAH IYZ 503 A 1 HETATM 14 C CAT IYZ . . . D 3 -6.318 -25.143 16.994 1 24.9 ? CAT IYZ 503 A 1 HETATM 15 C CAR IYZ . . . D 3 -6.285 -24.149 17.972 1 25.74 ? CAR IYZ 503 A 1 HETATM 16 C CAI IYZ . . . D 3 -6.731 -22.856 17.681 1 27.62 ? CAI IYZ 503 A 1 HETATM 17 C CAE IYZ . . . D 3 -5.732 -24.41 19.236 1 25.41 ? CAE IYZ 503 A 1 HETATM 18 C CAC IYZ . . . D 3 -5.682 -23.376 20.19 1 27.21 ? CAC IYZ 503 A 1 HETATM 19 C CAD IYZ . . . D 3 -6.177 -22.091 19.874 1 26.17 ? CAD IYZ 503 A 1 HETATM 20 C CAQ IYZ . . . D 3 -6.699 -21.834 18.613 1 27.69 ? CAQ IYZ 503 A 1 HETATM 21 C CAP IYZ . . . D 3 -7.281 -20.434 18.226 1 33.1 ? CAP IYZ 503 A 1 HETATM 22 C CAA IYZ . . . D 3 -8.379 -20.347 17.172 1 32.89 ? CAA IYZ 503 A 1 HETATM 23 O OAB IYZ . . . D 3 -6.92 -19.398 18.79 1 38.38 ? OAB IYZ 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #