data_4DZ3
#
_model_server_result.job_id            BfGs03o4gBiZ-8lNWF1dlg 
_model_server_result.datetime_utc      '2024-11-04 23:11:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dz3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":203}' 
#
_entry.id    4DZ3 
#
_exptl.entry_id    4DZ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DZ3 
_cell.length_a            48.98 
_cell.length_b            106.58 
_cell.length_c            107.16 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DZ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 51 A ASP 51 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc2 A O PRO 52 A PRO 52 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 A OD2 ASP 112 A ASP 112 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc4 A OD1 ASP 112 A ASP 112 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc5 A OXT VAL 113 A VAL 113 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc6 D CA CA . A CA 202 1_555 B OD1 ASP 51 B ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc7 D CA CA . A CA 202 1_555 B O PRO 52 B PRO 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc8 D CA CA . A CA 202 1_555 S O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc9 D CA CA . A CA 202 1_555 S O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc10 R O HOH . A HOH 321 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc11 R O HOH . A HOH 326 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc12 B OD2 ASP 112 B ASP 112 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc13 B OD1 ASP 112 B ASP 112 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc14 B O VAL 113 B VAL 113 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 76 n n 
C1 C2 EDO sing 77 n n 
C1 H11 EDO sing 78 n n 
C1 H12 EDO sing 79 n n 
O1 HO1 EDO sing 80 n n 
C2 O2 EDO sing 81 n n 
C2 H21 EDO sing 82 n n 
C2 H22 EDO sing 83 n n 
O2 HO2 EDO sing 84 n n 
#
_atom_sites.entry_id                     4DZ3 
_atom_sites.fract_transf_matrix[1][1]    0.020416 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009383 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FK5 A 1 201 200 FK5 FK5 . 
D 3 CA A 1 202 201 CA CA . 
E 4 EDO A 1 203 2 EDO EDO . 
F 4 EDO A 1 204 4 EDO EDO . 
G 4 EDO A 1 205 5 EDO EDO . 
H 5 ACT A 1 206 5 ACT ACT . 
I 2 FK5 B 1 201 200 FK5 FK5 . 
J 3 CA B 1 202 201 CA CA . 
K 4 EDO B 1 203 1 EDO EDO . 
L 4 EDO B 1 204 3 EDO EDO . 
M 4 EDO B 1 205 6 EDO EDO . 
N 5 ACT B 1 206 1 ACT ACT . 
O 5 ACT B 1 207 2 ACT ACT . 
P 5 ACT B 1 208 3 ACT ACT . 
Q 5 ACT B 1 209 4 ACT ACT . 
R 6 HOH A 1 301 8 HOH HOH . 
R 6 HOH A 2 302 9 HOH HOH . 
R 6 HOH A 3 303 11 HOH HOH . 
R 6 HOH A 4 304 13 HOH HOH . 
R 6 HOH A 5 305 14 HOH HOH . 
R 6 HOH A 6 306 18 HOH HOH . 
R 6 HOH A 7 307 22 HOH HOH . 
R 6 HOH A 8 308 25 HOH HOH . 
R 6 HOH A 9 309 26 HOH HOH . 
R 6 HOH A 10 310 29 HOH HOH . 
R 6 HOH A 11 311 31 HOH HOH . 
R 6 HOH A 12 312 33 HOH HOH . 
R 6 HOH A 13 313 37 HOH HOH . 
R 6 HOH A 14 314 38 HOH HOH . 
R 6 HOH A 15 315 43 HOH HOH . 
R 6 HOH A 16 316 44 HOH HOH . 
R 6 HOH A 17 317 46 HOH HOH . 
R 6 HOH A 18 318 50 HOH HOH . 
R 6 HOH A 19 319 51 HOH HOH . 
R 6 HOH A 20 320 52 HOH HOH . 
R 6 HOH A 21 321 53 HOH HOH . 
R 6 HOH A 22 322 56 HOH HOH . 
R 6 HOH A 23 323 57 HOH HOH . 
R 6 HOH A 24 324 59 HOH HOH . 
R 6 HOH A 25 325 60 HOH HOH . 
R 6 HOH A 26 326 61 HOH HOH . 
R 6 HOH A 27 327 62 HOH HOH . 
R 6 HOH A 28 328 63 HOH HOH . 
R 6 HOH A 29 329 66 HOH HOH . 
R 6 HOH A 30 330 67 HOH HOH . 
R 6 HOH A 31 331 68 HOH HOH . 
R 6 HOH A 32 332 70 HOH HOH . 
R 6 HOH A 33 333 73 HOH HOH . 
R 6 HOH A 34 334 76 HOH HOH . 
R 6 HOH A 35 335 77 HOH HOH . 
R 6 HOH A 36 336 78 HOH HOH . 
R 6 HOH A 37 337 79 HOH HOH . 
R 6 HOH A 38 338 80 HOH HOH . 
R 6 HOH A 39 339 81 HOH HOH . 
R 6 HOH A 40 340 82 HOH HOH . 
R 6 HOH A 41 341 83 HOH HOH . 
R 6 HOH A 42 342 84 HOH HOH . 
R 6 HOH A 43 343 85 HOH HOH . 
R 6 HOH A 44 344 86 HOH HOH . 
R 6 HOH A 45 345 87 HOH HOH . 
R 6 HOH A 46 346 88 HOH HOH . 
R 6 HOH A 47 347 89 HOH HOH . 
R 6 HOH A 48 348 90 HOH HOH . 
R 6 HOH A 49 349 91 HOH HOH . 
R 6 HOH A 50 350 92 HOH HOH . 
R 6 HOH A 51 351 93 HOH HOH . 
R 6 HOH A 52 352 94 HOH HOH . 
R 6 HOH A 53 353 112 HOH HOH . 
R 6 HOH A 54 354 113 HOH HOH . 
R 6 HOH A 55 355 114 HOH HOH . 
R 6 HOH A 56 356 115 HOH HOH . 
R 6 HOH A 57 357 116 HOH HOH . 
R 6 HOH A 58 358 126 HOH HOH . 
R 6 HOH A 59 359 127 HOH HOH . 
R 6 HOH A 60 360 128 HOH HOH . 
R 6 HOH A 61 361 129 HOH HOH . 
S 6 HOH B 1 301 1 HOH HOH . 
S 6 HOH B 2 302 2 HOH HOH . 
S 6 HOH B 3 303 3 HOH HOH . 
S 6 HOH B 4 304 4 HOH HOH . 
S 6 HOH B 5 305 5 HOH HOH . 
S 6 HOH B 6 306 6 HOH HOH . 
S 6 HOH B 7 307 7 HOH HOH . 
S 6 HOH B 8 308 10 HOH HOH . 
S 6 HOH B 9 309 12 HOH HOH . 
S 6 HOH B 10 310 15 HOH HOH . 
S 6 HOH B 11 311 16 HOH HOH . 
S 6 HOH B 12 312 17 HOH HOH . 
S 6 HOH B 13 313 19 HOH HOH . 
S 6 HOH B 14 314 20 HOH HOH . 
S 6 HOH B 15 315 21 HOH HOH . 
S 6 HOH B 16 316 23 HOH HOH . 
S 6 HOH B 17 317 24 HOH HOH . 
S 6 HOH B 18 318 27 HOH HOH . 
S 6 HOH B 19 319 28 HOH HOH . 
S 6 HOH B 20 320 30 HOH HOH . 
S 6 HOH B 21 321 32 HOH HOH . 
S 6 HOH B 22 322 34 HOH HOH . 
S 6 HOH B 23 323 35 HOH HOH . 
S 6 HOH B 24 324 36 HOH HOH . 
S 6 HOH B 25 325 39 HOH HOH . 
S 6 HOH B 26 326 40 HOH HOH . 
S 6 HOH B 27 327 41 HOH HOH . 
S 6 HOH B 28 328 42 HOH HOH . 
S 6 HOH B 29 329 45 HOH HOH . 
S 6 HOH B 30 330 47 HOH HOH . 
S 6 HOH B 31 331 48 HOH HOH . 
S 6 HOH B 32 332 49 HOH HOH . 
S 6 HOH B 33 333 54 HOH HOH . 
S 6 HOH B 34 334 55 HOH HOH . 
S 6 HOH B 35 335 58 HOH HOH . 
S 6 HOH B 36 336 64 HOH HOH . 
S 6 HOH B 37 337 65 HOH HOH . 
S 6 HOH B 38 338 69 HOH HOH . 
S 6 HOH B 39 339 71 HOH HOH . 
S 6 HOH B 40 340 72 HOH HOH . 
S 6 HOH B 41 341 74 HOH HOH . 
S 6 HOH B 42 342 75 HOH HOH . 
S 6 HOH B 43 343 95 HOH HOH . 
S 6 HOH B 44 344 96 HOH HOH . 
S 6 HOH B 45 345 97 HOH HOH . 
S 6 HOH B 46 346 98 HOH HOH . 
S 6 HOH B 47 347 99 HOH HOH . 
S 6 HOH B 48 348 100 HOH HOH . 
S 6 HOH B 49 349 101 HOH HOH . 
S 6 HOH B 50 350 102 HOH HOH . 
S 6 HOH B 51 351 103 HOH HOH . 
S 6 HOH B 52 352 104 HOH HOH . 
S 6 HOH B 53 353 105 HOH HOH . 
S 6 HOH B 54 354 106 HOH HOH . 
S 6 HOH B 55 355 107 HOH HOH . 
S 6 HOH B 56 356 108 HOH HOH . 
S 6 HOH B 57 357 109 HOH HOH . 
S 6 HOH B 58 358 110 HOH HOH . 
S 6 HOH B 59 359 111 HOH HOH . 
S 6 HOH B 60 360 117 HOH HOH . 
S 6 HOH B 61 361 118 HOH HOH . 
S 6 HOH B 62 362 119 HOH HOH . 
S 6 HOH B 63 363 120 HOH HOH . 
S 6 HOH B 64 364 121 HOH HOH . 
S 6 HOH B 65 365 122 HOH HOH . 
S 6 HOH B 66 366 123 HOH HOH . 
S 6 HOH B 67 367 124 HOH HOH . 
S 6 HOH B 68 368 125 HOH HOH . 
S 6 HOH B 69 369 130 HOH HOH . 
S 6 HOH B 70 370 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 4 28.878 15.677 -23.642 1 35.83 ? C1 EDO 203 B 1 
HETATM 2 O O1 EDO . . . K 4 27.982 15.254 -22.62 1 37.06 ? O1 EDO 203 B 1 
HETATM 3 C C2 EDO . . . K 4 28.083 16.473 -24.662 1 36.52 ? C2 EDO 203 B 1 
HETATM 4 O O2 EDO . . . K 4 27.487 15.588 -25.637 1 36.61 ? O2 EDO 203 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#