data_4DZ3 # _model_server_result.job_id WQxA6E0Zp1f56D5Q5ND5eQ _model_server_result.datetime_utc '2024-11-04 23:14:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":204}' # _entry.id 4DZ3 # _exptl.entry_id 4DZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DZ3 _cell.length_a 48.98 _cell.length_b 106.58 _cell.length_c 107.16 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 51 A ASP 51 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A O PRO 52 A PRO 52 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A OD2 ASP 112 A ASP 112 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 A OD1 ASP 112 A ASP 112 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc5 A OXT VAL 113 A VAL 113 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc6 D CA CA . A CA 202 1_555 B OD1 ASP 51 B ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc7 D CA CA . A CA 202 1_555 B O PRO 52 B PRO 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 D CA CA . A CA 202 1_555 S O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc9 D CA CA . A CA 202 1_555 S O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc10 R O HOH . A HOH 321 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc11 R O HOH . A HOH 326 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc12 B OD2 ASP 112 B ASP 112 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc13 B OD1 ASP 112 B ASP 112 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc14 B O VAL 113 B VAL 113 1_555 J CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 76 n n C1 C2 EDO sing 77 n n C1 H11 EDO sing 78 n n C1 H12 EDO sing 79 n n O1 HO1 EDO sing 80 n n C2 O2 EDO sing 81 n n C2 H21 EDO sing 82 n n C2 H22 EDO sing 83 n n O2 HO2 EDO sing 84 n n # _atom_sites.entry_id 4DZ3 _atom_sites.fract_transf_matrix[1][1] 0.020416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FK5 A 1 201 200 FK5 FK5 . D 3 CA A 1 202 201 CA CA . E 4 EDO A 1 203 2 EDO EDO . F 4 EDO A 1 204 4 EDO EDO . G 4 EDO A 1 205 5 EDO EDO . H 5 ACT A 1 206 5 ACT ACT . I 2 FK5 B 1 201 200 FK5 FK5 . J 3 CA B 1 202 201 CA CA . K 4 EDO B 1 203 1 EDO EDO . L 4 EDO B 1 204 3 EDO EDO . M 4 EDO B 1 205 6 EDO EDO . N 5 ACT B 1 206 1 ACT ACT . O 5 ACT B 1 207 2 ACT ACT . P 5 ACT B 1 208 3 ACT ACT . Q 5 ACT B 1 209 4 ACT ACT . R 6 HOH A 1 301 8 HOH HOH . R 6 HOH A 2 302 9 HOH HOH . R 6 HOH A 3 303 11 HOH HOH . R 6 HOH A 4 304 13 HOH HOH . R 6 HOH A 5 305 14 HOH HOH . R 6 HOH A 6 306 18 HOH HOH . R 6 HOH A 7 307 22 HOH HOH . R 6 HOH A 8 308 25 HOH HOH . R 6 HOH A 9 309 26 HOH HOH . R 6 HOH A 10 310 29 HOH HOH . R 6 HOH A 11 311 31 HOH HOH . R 6 HOH A 12 312 33 HOH HOH . R 6 HOH A 13 313 37 HOH HOH . R 6 HOH A 14 314 38 HOH HOH . R 6 HOH A 15 315 43 HOH HOH . R 6 HOH A 16 316 44 HOH HOH . R 6 HOH A 17 317 46 HOH HOH . R 6 HOH A 18 318 50 HOH HOH . R 6 HOH A 19 319 51 HOH HOH . R 6 HOH A 20 320 52 HOH HOH . R 6 HOH A 21 321 53 HOH HOH . R 6 HOH A 22 322 56 HOH HOH . R 6 HOH A 23 323 57 HOH HOH . R 6 HOH A 24 324 59 HOH HOH . R 6 HOH A 25 325 60 HOH HOH . R 6 HOH A 26 326 61 HOH HOH . R 6 HOH A 27 327 62 HOH HOH . R 6 HOH A 28 328 63 HOH HOH . R 6 HOH A 29 329 66 HOH HOH . R 6 HOH A 30 330 67 HOH HOH . R 6 HOH A 31 331 68 HOH HOH . R 6 HOH A 32 332 70 HOH HOH . R 6 HOH A 33 333 73 HOH HOH . R 6 HOH A 34 334 76 HOH HOH . R 6 HOH A 35 335 77 HOH HOH . R 6 HOH A 36 336 78 HOH HOH . R 6 HOH A 37 337 79 HOH HOH . R 6 HOH A 38 338 80 HOH HOH . R 6 HOH A 39 339 81 HOH HOH . R 6 HOH A 40 340 82 HOH HOH . R 6 HOH A 41 341 83 HOH HOH . R 6 HOH A 42 342 84 HOH HOH . R 6 HOH A 43 343 85 HOH HOH . R 6 HOH A 44 344 86 HOH HOH . R 6 HOH A 45 345 87 HOH HOH . R 6 HOH A 46 346 88 HOH HOH . R 6 HOH A 47 347 89 HOH HOH . R 6 HOH A 48 348 90 HOH HOH . R 6 HOH A 49 349 91 HOH HOH . R 6 HOH A 50 350 92 HOH HOH . R 6 HOH A 51 351 93 HOH HOH . R 6 HOH A 52 352 94 HOH HOH . R 6 HOH A 53 353 112 HOH HOH . R 6 HOH A 54 354 113 HOH HOH . R 6 HOH A 55 355 114 HOH HOH . R 6 HOH A 56 356 115 HOH HOH . R 6 HOH A 57 357 116 HOH HOH . R 6 HOH A 58 358 126 HOH HOH . R 6 HOH A 59 359 127 HOH HOH . R 6 HOH A 60 360 128 HOH HOH . R 6 HOH A 61 361 129 HOH HOH . S 6 HOH B 1 301 1 HOH HOH . S 6 HOH B 2 302 2 HOH HOH . S 6 HOH B 3 303 3 HOH HOH . S 6 HOH B 4 304 4 HOH HOH . S 6 HOH B 5 305 5 HOH HOH . S 6 HOH B 6 306 6 HOH HOH . S 6 HOH B 7 307 7 HOH HOH . S 6 HOH B 8 308 10 HOH HOH . S 6 HOH B 9 309 12 HOH HOH . S 6 HOH B 10 310 15 HOH HOH . S 6 HOH B 11 311 16 HOH HOH . S 6 HOH B 12 312 17 HOH HOH . S 6 HOH B 13 313 19 HOH HOH . S 6 HOH B 14 314 20 HOH HOH . S 6 HOH B 15 315 21 HOH HOH . S 6 HOH B 16 316 23 HOH HOH . S 6 HOH B 17 317 24 HOH HOH . S 6 HOH B 18 318 27 HOH HOH . S 6 HOH B 19 319 28 HOH HOH . S 6 HOH B 20 320 30 HOH HOH . S 6 HOH B 21 321 32 HOH HOH . S 6 HOH B 22 322 34 HOH HOH . S 6 HOH B 23 323 35 HOH HOH . S 6 HOH B 24 324 36 HOH HOH . S 6 HOH B 25 325 39 HOH HOH . S 6 HOH B 26 326 40 HOH HOH . S 6 HOH B 27 327 41 HOH HOH . S 6 HOH B 28 328 42 HOH HOH . S 6 HOH B 29 329 45 HOH HOH . S 6 HOH B 30 330 47 HOH HOH . S 6 HOH B 31 331 48 HOH HOH . S 6 HOH B 32 332 49 HOH HOH . S 6 HOH B 33 333 54 HOH HOH . S 6 HOH B 34 334 55 HOH HOH . S 6 HOH B 35 335 58 HOH HOH . S 6 HOH B 36 336 64 HOH HOH . S 6 HOH B 37 337 65 HOH HOH . S 6 HOH B 38 338 69 HOH HOH . S 6 HOH B 39 339 71 HOH HOH . S 6 HOH B 40 340 72 HOH HOH . S 6 HOH B 41 341 74 HOH HOH . S 6 HOH B 42 342 75 HOH HOH . S 6 HOH B 43 343 95 HOH HOH . S 6 HOH B 44 344 96 HOH HOH . S 6 HOH B 45 345 97 HOH HOH . S 6 HOH B 46 346 98 HOH HOH . S 6 HOH B 47 347 99 HOH HOH . S 6 HOH B 48 348 100 HOH HOH . S 6 HOH B 49 349 101 HOH HOH . S 6 HOH B 50 350 102 HOH HOH . S 6 HOH B 51 351 103 HOH HOH . S 6 HOH B 52 352 104 HOH HOH . S 6 HOH B 53 353 105 HOH HOH . S 6 HOH B 54 354 106 HOH HOH . S 6 HOH B 55 355 107 HOH HOH . S 6 HOH B 56 356 108 HOH HOH . S 6 HOH B 57 357 109 HOH HOH . S 6 HOH B 58 358 110 HOH HOH . S 6 HOH B 59 359 111 HOH HOH . S 6 HOH B 60 360 117 HOH HOH . S 6 HOH B 61 361 118 HOH HOH . S 6 HOH B 62 362 119 HOH HOH . S 6 HOH B 63 363 120 HOH HOH . S 6 HOH B 64 364 121 HOH HOH . S 6 HOH B 65 365 122 HOH HOH . S 6 HOH B 66 366 123 HOH HOH . S 6 HOH B 67 367 124 HOH HOH . S 6 HOH B 68 368 125 HOH HOH . S 6 HOH B 69 369 130 HOH HOH . S 6 HOH B 70 370 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 4 39.782 -6.15 -35.339 1 23.94 ? C1 EDO 204 B 1 HETATM 2 O O1 EDO . . . L 4 41.103 -5.937 -35.843 1 22.9 ? O1 EDO 204 B 1 HETATM 3 C C2 EDO . . . L 4 39.787 -7.297 -34.341 1 25.54 ? C2 EDO 204 B 1 HETATM 4 O O2 EDO . . . L 4 39.854 -6.779 -33.01 1 27.54 ? O2 EDO 204 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 4 #