data_4DZW # _model_server_result.job_id kKt8IgbYJ3zcDb5lpycvvw _model_server_result.datetime_utc '2024-11-25 02:48:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dzw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4DZW # _exptl.entry_id 4DZW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.187 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DZW _cell.length_a 57.975 _cell.length_b 57.975 _cell.length_c 395.026 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DZW _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -28.9875 -50.207823 -65.837667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD2 ASP 102 A ASP 102 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc2 A OD2 ASP 250 A ASP 250 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc3 B O5 0MQ . A 0MQ 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 B O6 0MQ . A 0MQ 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 B O2 0MQ . A 0MQ 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? # _chem_comp.formula 'C8 H19 N O6 P2' _chem_comp.formula_weight 287.187 _chem_comp.id 0MQ _chem_comp.mon_nstd_flag . _chem_comp.name '[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 0MQ sing 1 n n C5 C4 0MQ sing 2 n n C6 C7 0MQ sing 3 n n C7 C8 0MQ sing 4 n n C4 C3 0MQ sing 5 n n C3 C8 0MQ sing 6 n n C3 N1 0MQ sing 7 n n O3 P1 0MQ doub 8 n n C2 N1 0MQ sing 9 n n C2 C1 0MQ sing 10 n n O1 P1 0MQ sing 11 n n P1 C1 0MQ sing 12 n n P1 O2 0MQ sing 13 n n C1 P2 0MQ sing 14 n n O5 P2 0MQ doub 15 n n P2 O4 0MQ sing 16 n n P2 O6 0MQ sing 17 n n O6 H1 0MQ sing 18 n n O4 H2 0MQ sing 19 n n C1 H3 0MQ sing 20 n n O2 H4 0MQ sing 21 n n O1 H5 0MQ sing 22 n n C2 H6 0MQ sing 23 n n C2 H7 0MQ sing 24 n n N1 H8 0MQ sing 25 n n C3 H10 0MQ sing 26 n n C4 H11 0MQ sing 27 n n C4 H12 0MQ sing 28 n n C5 H13 0MQ sing 29 n n C5 H14 0MQ sing 30 n n C6 H15 0MQ sing 31 n n C6 H16 0MQ sing 32 n n C7 H17 0MQ sing 33 n n C7 H18 0MQ sing 34 n n C8 H19 0MQ sing 35 n n C8 H20 0MQ sing 36 n n # _atom_sites.entry_id 4DZW _atom_sites.fract_transf_matrix[1][1] 0.017249 _atom_sites.fract_transf_matrix[1][2] 0.009959 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0MQ A 1 401 500 0MQ 0MQ . C 3 MG A 1 402 401 MG MG . D 3 MG A 1 403 402 MG MG . E 4 IPE A 1 404 501 IPE IPR . F 5 SO4 A 1 405 1 SO4 SO4 . G 5 SO4 A 1 406 2 SO4 SO4 . H 6 HOH A 1 501 1 HOH HOH . H 6 HOH A 2 502 4 HOH HOH . H 6 HOH A 3 503 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 0MQ . . . B 2 -15.107 -14.837 -16.397 1 42.47 ? O6 0MQ 401 A 1 HETATM 2 P P2 0MQ . . . B 2 -15.583 -15.684 -17.551 1 43.15 ? P2 0MQ 401 A 1 HETATM 3 O O4 0MQ . . . B 2 -15.582 -17.184 -17.416 1 43.35 ? O4 0MQ 401 A 1 HETATM 4 O O5 0MQ . . . B 2 -17.093 -15.248 -17.89 1 43.98 ? O5 0MQ 401 A 1 HETATM 5 C C1 0MQ . . . B 2 -14.545 -15.257 -18.973 1 44.11 ? C1 0MQ 401 A 1 HETATM 6 P P1 0MQ . . . B 2 -14.816 -13.51 -19.403 1 44.86 ? P1 0MQ 401 A 1 HETATM 7 O O3 0MQ . . . B 2 -15.838 -13.399 -20.511 1 44.61 ? O3 0MQ 401 A 1 HETATM 8 O O2 0MQ . . . B 2 -15.44 -12.788 -18.099 1 45.06 ? O2 0MQ 401 A 1 HETATM 9 O O1 0MQ . . . B 2 -13.449 -12.926 -19.654 1 44.61 ? O1 0MQ 401 A 1 HETATM 10 C C2 0MQ . . . B 2 -14.89 -16.174 -20.136 1 44.06 ? C2 0MQ 401 A 1 HETATM 11 N N1 0MQ . . . B 2 -14.316 -17.476 -19.871 1 44.6 ? N1 0MQ 401 A 1 HETATM 12 C C3 0MQ . . . B 2 -13.658 -18.209 -20.937 1 44.79 ? C3 0MQ 401 A 1 HETATM 13 C C4 0MQ . . . B 2 -12.289 -17.608 -21.27 1 44.58 ? C4 0MQ 401 A 1 HETATM 14 C C5 0MQ . . . B 2 -11.586 -18.393 -22.376 1 44.37 ? C5 0MQ 401 A 1 HETATM 15 C C6 0MQ . . . B 2 -11.519 -19.893 -22.073 1 44.53 ? C6 0MQ 401 A 1 HETATM 16 C C7 0MQ . . . B 2 -12.869 -20.483 -21.666 1 44.47 ? C7 0MQ 401 A 1 HETATM 17 C C8 0MQ . . . B 2 -13.488 -19.672 -20.529 1 44.88 ? C8 0MQ 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 17 #