data_4DZY
#
_model_server_result.job_id            pt5UVm4XVyTvHfHfqJpMSA 
_model_server_result.datetime_utc      '2024-11-28 22:02:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dzy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    4DZY 
#
_exptl.entry_id    4DZY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              184.62 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(S)-2-chloro-3-phenylpropanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DZY 
_cell.length_a            127.326 
_cell.length_b            127.326 
_cell.length_c            73.249 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DZY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 279 A ASN 249 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A O VAL 328 A VAL 298 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc3 A O ASP 330 A ASP 300 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
metalc ? metalc4 A O PHE 333 A PHE 303 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc5 A O GLY 367 A GLY 337 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? 
metalc ? metalc6 B O2B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc7 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc8 B O1A ADP . A ADP 401 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
metalc ? metalc9 C MG MG . A MG 402 1_555 F O HOH . A HOH 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc10 C MG MG . A MG 402 1_555 F O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc11 C MG MG . A MG 402 1_555 F O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
#
_chem_comp.formula           'C9 H9 Cl O2' 
_chem_comp.formula_weight    184.62 
_chem_comp.id                WJ1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(S)-2-chloro-3-phenylpropanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C9 WJ1 doub 420 n n 
O2 C9 WJ1 sing 421 n n 
C9 C8 WJ1 sing 422 n n 
CL1 C8 WJ1 sing 423 n n 
C8 C7 WJ1 sing 424 n n 
C7 C6 WJ1 sing 425 n n 
C6 C1 WJ1 doub 426 n y 
C6 C5 WJ1 sing 427 n y 
C1 C2 WJ1 sing 428 n y 
C5 C4 WJ1 doub 429 n y 
C2 C3 WJ1 doub 430 n y 
C4 C3 WJ1 sing 431 n y 
O2 H1 WJ1 sing 432 n n 
C8 H2 WJ1 sing 433 n n 
C7 H3 WJ1 sing 434 n n 
C7 H4 WJ1 sing 435 n n 
C1 H5 WJ1 sing 436 n n 
C5 H6 WJ1 sing 437 n n 
C4 H7 WJ1 sing 438 n n 
C3 H8 WJ1 sing 439 n n 
C2 H9 WJ1 sing 440 n n 
#
_atom_sites.entry_id                     4DZY 
_atom_sites.fract_transf_matrix[1][1]    0.007854 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007854 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013652 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1 ADP ADP . 
C 3 MG A 1 402 1 MG MG . 
D 4 K A 1 403 1 K K . 
E 5 WJ1 A 1 404 1 WJ1 WJ1 . 
F 6 HOH A 1 501 1 HOH HOH . 
F 6 HOH A 2 502 2 HOH HOH . 
F 6 HOH A 3 503 3 HOH HOH . 
F 6 HOH A 4 504 4 HOH HOH . 
F 6 HOH A 5 505 5 HOH HOH . 
F 6 HOH A 6 506 6 HOH HOH . 
F 6 HOH A 7 507 7 HOH HOH . 
F 6 HOH A 8 508 8 HOH HOH . 
F 6 HOH A 9 509 9 HOH HOH . 
F 6 HOH A 10 510 10 HOH HOH . 
F 6 HOH A 11 511 11 HOH HOH . 
F 6 HOH A 12 512 12 HOH HOH . 
F 6 HOH A 13 513 14 HOH HOH . 
F 6 HOH A 14 514 15 HOH HOH . 
F 6 HOH A 15 515 16 HOH HOH . 
F 6 HOH A 16 516 17 HOH HOH . 
F 6 HOH A 17 517 18 HOH HOH . 
F 6 HOH A 18 518 19 HOH HOH . 
F 6 HOH A 19 519 20 HOH HOH . 
F 6 HOH A 20 520 21 HOH HOH . 
F 6 HOH A 21 521 22 HOH HOH . 
F 6 HOH A 22 522 23 HOH HOH . 
F 6 HOH A 23 523 24 HOH HOH . 
F 6 HOH A 24 524 25 HOH HOH . 
F 6 HOH A 25 525 26 HOH HOH . 
F 6 HOH A 26 526 27 HOH HOH . 
F 6 HOH A 27 527 28 HOH HOH . 
F 6 HOH A 28 528 29 HOH HOH . 
F 6 HOH A 29 529 30 HOH HOH . 
F 6 HOH A 30 530 31 HOH HOH . 
F 6 HOH A 31 531 32 HOH HOH . 
F 6 HOH A 32 532 33 HOH HOH . 
F 6 HOH A 33 533 34 HOH HOH . 
F 6 HOH A 34 534 35 HOH HOH . 
F 6 HOH A 35 535 36 HOH HOH . 
F 6 HOH A 36 536 37 HOH HOH . 
F 6 HOH A 37 537 38 HOH HOH . 
F 6 HOH A 38 538 39 HOH HOH . 
F 6 HOH A 39 539 40 HOH HOH . 
F 6 HOH A 40 540 41 HOH HOH . 
F 6 HOH A 41 541 42 HOH HOH . 
F 6 HOH A 42 542 43 HOH HOH . 
F 6 HOH A 43 543 44 HOH HOH . 
F 6 HOH A 44 544 45 HOH HOH . 
F 6 HOH A 45 545 46 HOH HOH . 
F 6 HOH A 46 546 47 HOH HOH . 
F 6 HOH A 47 547 49 HOH HOH . 
F 6 HOH A 48 548 51 HOH HOH . 
F 6 HOH A 49 549 52 HOH HOH . 
F 6 HOH A 50 550 53 HOH HOH . 
F 6 HOH A 51 551 54 HOH HOH . 
F 6 HOH A 52 552 55 HOH HOH . 
F 6 HOH A 53 553 56 HOH HOH . 
F 6 HOH A 54 554 57 HOH HOH . 
F 6 HOH A 55 555 58 HOH HOH . 
F 6 HOH A 56 556 61 HOH HOH . 
F 6 HOH A 57 557 62 HOH HOH . 
F 6 HOH A 58 558 63 HOH HOH . 
F 6 HOH A 59 559 64 HOH HOH . 
F 6 HOH A 60 560 65 HOH HOH . 
F 6 HOH A 61 561 66 HOH HOH . 
F 6 HOH A 62 562 67 HOH HOH . 
F 6 HOH A 63 563 68 HOH HOH . 
F 6 HOH A 64 564 69 HOH HOH . 
F 6 HOH A 65 565 73 HOH HOH . 
F 6 HOH A 66 566 74 HOH HOH . 
F 6 HOH A 67 567 77 HOH HOH . 
F 6 HOH A 68 568 79 HOH HOH . 
F 6 HOH A 69 569 81 HOH HOH . 
F 6 HOH A 70 570 84 HOH HOH . 
F 6 HOH A 71 571 85 HOH HOH . 
F 6 HOH A 72 572 86 HOH HOH . 
F 6 HOH A 73 573 87 HOH HOH . 
F 6 HOH A 74 574 88 HOH HOH . 
F 6 HOH A 75 575 90 HOH HOH . 
F 6 HOH A 76 576 96 HOH HOH . 
F 6 HOH A 77 577 100 HOH HOH . 
F 6 HOH A 78 578 101 HOH HOH . 
F 6 HOH A 79 579 102 HOH HOH . 
F 6 HOH A 80 580 103 HOH HOH . 
F 6 HOH A 81 581 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 WJ1 . . . E 5 -6.906 -32.755 13.457 1 39.23 ? O2 WJ1 404 A 1 
HETATM 2 C C9 WJ1 . . . E 5 -7.696 -31.864 13.672 1 38.49 ? C9 WJ1 404 A 1 
HETATM 3 O O1 WJ1 . . . E 5 -8.334 -31.304 12.636 1 40.11 ? O1 WJ1 404 A 1 
HETATM 4 C C8 WJ1 . . . E 5 -7.954 -31.433 15.079 1 41.74 ? C8 WJ1 404 A 1 
HETATM 5 CL CL1 WJ1 . . . E 5 -8.326 -29.684 15.033 1 54.51 ? CL1 WJ1 404 A 1 
HETATM 6 C C7 WJ1 . . . E 5 -9.113 -32.252 15.692 1 46.43 ? C7 WJ1 404 A 1 
HETATM 7 C C6 WJ1 . . . E 5 -9.045 -32.114 17.198 1 38.42 ? C6 WJ1 404 A 1 
HETATM 8 C C1 WJ1 . . . E 5 -9.872 -31.21 17.85 1 41.8 ? C1 WJ1 404 A 1 
HETATM 9 C C5 WJ1 . . . E 5 -8.145 -32.878 17.934 1 33.99 ? C5 WJ1 404 A 1 
HETATM 10 C C4 WJ1 . . . E 5 -8.066 -32.725 19.316 1 40.9 ? C4 WJ1 404 A 1 
HETATM 11 C C3 WJ1 . . . E 5 -8.889 -31.814 19.975 1 38.01 ? C3 WJ1 404 A 1 
HETATM 12 C C2 WJ1 . . . E 5 -9.791 -31.058 19.235 1 36.24 ? C2 WJ1 404 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#