data_4DZZ # _model_server_result.job_id hQMx4bThEGLnRns7nSgNJw _model_server_result.datetime_utc '2024-11-05 00:52:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4DZZ # _exptl.entry_id 4DZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93 _cell.angle_gamma 90 _cell.entry_id 4DZZ _cell.length_a 39.5 _cell.length_b 78.3 _cell.length_c 68.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 16 A THR 16 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 C O2B ADP . A ADP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc3 D MG MG . A MG 502 1_555 G O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 D MG MG . A MG 502 1_555 G O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc5 D MG MG . A MG 502 1_555 G O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 D MG MG . A MG 502 1_555 G O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 B OG1 THR 16 B THR 16 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 E O2B ADP . B ADP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc9 E O3B ADP . B ADP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc10 F MG MG . B MG 302 1_555 H O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc11 F MG MG . B MG 302 1_555 H O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc12 F MG MG . B MG 302 1_555 H O HOH . B HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc13 F MG MG . B MG 302 1_555 H O HOH . B HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DZZ _atom_sites.fract_transf_matrix[1][1] 0.025316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001327 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 501 501 ADP ADP . D 3 MG A 1 502 155 MG MG . E 2 ADP B 1 301 500 ADP ADP . F 3 MG B 1 302 3 MG MG . G 4 HOH A 1 601 2 HOH TIP . G 4 HOH A 2 602 3 HOH TIP . G 4 HOH A 3 603 4 HOH TIP . G 4 HOH A 4 604 6 HOH TIP . G 4 HOH A 5 605 8 HOH TIP . G 4 HOH A 6 606 9 HOH TIP . G 4 HOH A 7 607 10 HOH TIP . G 4 HOH A 8 608 12 HOH TIP . G 4 HOH A 9 609 16 HOH TIP . G 4 HOH A 10 610 18 HOH TIP . G 4 HOH A 11 611 20 HOH TIP . G 4 HOH A 12 612 21 HOH TIP . G 4 HOH A 13 613 23 HOH TIP . G 4 HOH A 14 614 27 HOH TIP . G 4 HOH A 15 615 29 HOH TIP . G 4 HOH A 16 616 30 HOH TIP . G 4 HOH A 17 617 32 HOH TIP . G 4 HOH A 18 618 33 HOH TIP . G 4 HOH A 19 619 34 HOH TIP . G 4 HOH A 20 620 35 HOH TIP . G 4 HOH A 21 621 36 HOH TIP . G 4 HOH A 22 622 38 HOH TIP . G 4 HOH A 23 623 40 HOH TIP . G 4 HOH A 24 624 43 HOH TIP . G 4 HOH A 25 625 45 HOH TIP . G 4 HOH A 26 626 48 HOH TIP . G 4 HOH A 27 627 49 HOH TIP . G 4 HOH A 28 628 50 HOH TIP . G 4 HOH A 29 629 51 HOH TIP . G 4 HOH A 30 630 53 HOH TIP . G 4 HOH A 31 631 54 HOH TIP . G 4 HOH A 32 632 55 HOH TIP . G 4 HOH A 33 633 57 HOH TIP . G 4 HOH A 34 634 58 HOH TIP . G 4 HOH A 35 635 60 HOH TIP . G 4 HOH A 36 636 61 HOH TIP . G 4 HOH A 37 637 62 HOH TIP . G 4 HOH A 38 638 63 HOH TIP . G 4 HOH A 39 639 65 HOH TIP . G 4 HOH A 40 640 66 HOH TIP . G 4 HOH A 41 641 67 HOH TIP . G 4 HOH A 42 642 69 HOH TIP . G 4 HOH A 43 643 70 HOH TIP . G 4 HOH A 44 644 73 HOH TIP . G 4 HOH A 45 645 74 HOH TIP . G 4 HOH A 46 646 76 HOH TIP . G 4 HOH A 47 647 79 HOH TIP . G 4 HOH A 48 648 82 HOH TIP . G 4 HOH A 49 649 84 HOH TIP . G 4 HOH A 50 650 85 HOH TIP . G 4 HOH A 51 651 86 HOH TIP . G 4 HOH A 52 652 90 HOH TIP . G 4 HOH A 53 653 95 HOH TIP . G 4 HOH A 54 654 98 HOH TIP . G 4 HOH A 55 655 100 HOH TIP . G 4 HOH A 56 656 101 HOH TIP . G 4 HOH A 57 657 103 HOH TIP . G 4 HOH A 58 658 104 HOH TIP . G 4 HOH A 59 659 106 HOH TIP . G 4 HOH A 60 660 108 HOH TIP . G 4 HOH A 61 661 110 HOH TIP . G 4 HOH A 62 662 111 HOH TIP . G 4 HOH A 63 663 113 HOH TIP . G 4 HOH A 64 664 114 HOH TIP . G 4 HOH A 65 665 119 HOH TIP . G 4 HOH A 66 666 120 HOH TIP . G 4 HOH A 67 667 123 HOH TIP . G 4 HOH A 68 668 125 HOH TIP . G 4 HOH A 69 669 128 HOH TIP . G 4 HOH A 70 670 129 HOH TIP . G 4 HOH A 71 671 130 HOH TIP . G 4 HOH A 72 672 131 HOH TIP . G 4 HOH A 73 673 132 HOH TIP . G 4 HOH A 74 674 137 HOH TIP . G 4 HOH A 75 675 138 HOH TIP . G 4 HOH A 76 676 140 HOH TIP . G 4 HOH A 77 677 142 HOH TIP . G 4 HOH A 78 678 143 HOH TIP . G 4 HOH A 79 679 144 HOH TIP . G 4 HOH A 80 680 145 HOH TIP . G 4 HOH A 81 681 148 HOH TIP . G 4 HOH A 82 682 149 HOH TIP . G 4 HOH A 83 683 150 HOH TIP . G 4 HOH A 84 684 151 HOH TIP . G 4 HOH A 85 685 152 HOH TIP . G 4 HOH A 86 686 157 HOH TIP . G 4 HOH A 87 687 159 HOH TIP . G 4 HOH A 88 688 161 HOH TIP . G 4 HOH A 89 689 162 HOH TIP . G 4 HOH A 90 690 164 HOH TIP . G 4 HOH A 91 691 167 HOH TIP . G 4 HOH A 92 692 169 HOH TIP . G 4 HOH A 93 693 170 HOH TIP . G 4 HOH A 94 694 171 HOH TIP . G 4 HOH A 95 695 173 HOH TIP . G 4 HOH A 96 696 176 HOH TIP . G 4 HOH A 97 697 182 HOH TIP . G 4 HOH A 98 698 186 HOH TIP . G 4 HOH A 99 699 187 HOH TIP . G 4 HOH A 100 700 188 HOH TIP . G 4 HOH A 101 701 189 HOH TIP . G 4 HOH A 102 702 190 HOH TIP . G 4 HOH A 103 703 192 HOH TIP . G 4 HOH A 104 704 193 HOH TIP . G 4 HOH A 105 705 195 HOH TIP . G 4 HOH A 106 706 196 HOH TIP . G 4 HOH A 107 707 198 HOH TIP . G 4 HOH A 108 708 199 HOH TIP . G 4 HOH A 109 709 201 HOH TIP . G 4 HOH A 110 710 204 HOH TIP . G 4 HOH A 111 711 205 HOH TIP . G 4 HOH A 112 712 206 HOH TIP . G 4 HOH A 113 713 207 HOH TIP . G 4 HOH A 114 714 209 HOH TIP . G 4 HOH A 115 715 210 HOH TIP . G 4 HOH A 116 716 211 HOH TIP . G 4 HOH A 117 717 216 HOH TIP . G 4 HOH A 118 718 217 HOH TIP . G 4 HOH A 119 719 220 HOH TIP . G 4 HOH A 120 720 221 HOH TIP . G 4 HOH A 121 721 222 HOH TIP . G 4 HOH A 122 722 226 HOH TIP . G 4 HOH A 123 723 227 HOH TIP . G 4 HOH A 124 724 228 HOH TIP . G 4 HOH A 125 725 231 HOH TIP . G 4 HOH A 126 726 233 HOH TIP . G 4 HOH A 127 727 234 HOH TIP . G 4 HOH A 128 728 237 HOH TIP . G 4 HOH A 129 729 239 HOH TIP . G 4 HOH A 130 730 160 HOH TIP . G 4 HOH A 131 731 172 HOH TIP . G 4 HOH A 132 732 238 HOH TIP . H 4 HOH B 1 401 1 HOH TIP . H 4 HOH B 2 402 7 HOH TIP . H 4 HOH B 3 403 11 HOH TIP . H 4 HOH B 4 404 13 HOH TIP . H 4 HOH B 5 405 14 HOH TIP . H 4 HOH B 6 406 15 HOH TIP . H 4 HOH B 7 407 17 HOH TIP . H 4 HOH B 8 408 19 HOH TIP . H 4 HOH B 9 409 22 HOH TIP . H 4 HOH B 10 410 24 HOH TIP . H 4 HOH B 11 411 25 HOH TIP . H 4 HOH B 12 412 26 HOH TIP . H 4 HOH B 13 413 28 HOH TIP . H 4 HOH B 14 414 31 HOH TIP . H 4 HOH B 15 415 37 HOH TIP . H 4 HOH B 16 416 39 HOH TIP . H 4 HOH B 17 417 41 HOH TIP . H 4 HOH B 18 418 42 HOH TIP . H 4 HOH B 19 419 46 HOH TIP . H 4 HOH B 20 420 47 HOH TIP . H 4 HOH B 21 421 52 HOH TIP . H 4 HOH B 22 422 56 HOH TIP . H 4 HOH B 23 423 59 HOH TIP . H 4 HOH B 24 424 64 HOH TIP . H 4 HOH B 25 425 68 HOH TIP . H 4 HOH B 26 426 71 HOH TIP . H 4 HOH B 27 427 72 HOH TIP . H 4 HOH B 28 428 75 HOH TIP . H 4 HOH B 29 429 77 HOH TIP . H 4 HOH B 30 430 78 HOH TIP . H 4 HOH B 31 431 80 HOH TIP . H 4 HOH B 32 432 81 HOH TIP . H 4 HOH B 33 433 83 HOH TIP . H 4 HOH B 34 434 87 HOH TIP . H 4 HOH B 35 435 88 HOH TIP . H 4 HOH B 36 436 89 HOH TIP . H 4 HOH B 37 437 91 HOH TIP . H 4 HOH B 38 438 92 HOH TIP . H 4 HOH B 39 439 93 HOH TIP . H 4 HOH B 40 440 94 HOH TIP . H 4 HOH B 41 441 96 HOH TIP . H 4 HOH B 42 442 97 HOH TIP . H 4 HOH B 43 443 99 HOH TIP . H 4 HOH B 44 444 102 HOH TIP . H 4 HOH B 45 445 105 HOH TIP . H 4 HOH B 46 446 107 HOH TIP . H 4 HOH B 47 447 109 HOH TIP . H 4 HOH B 48 448 112 HOH TIP . H 4 HOH B 49 449 115 HOH TIP . H 4 HOH B 50 450 116 HOH TIP . H 4 HOH B 51 451 117 HOH TIP . H 4 HOH B 52 452 118 HOH TIP . H 4 HOH B 53 453 121 HOH TIP . H 4 HOH B 54 454 122 HOH TIP . H 4 HOH B 55 455 124 HOH TIP . H 4 HOH B 56 456 126 HOH TIP . H 4 HOH B 57 457 127 HOH TIP . H 4 HOH B 58 458 133 HOH TIP . H 4 HOH B 59 459 134 HOH TIP . H 4 HOH B 60 460 135 HOH TIP . H 4 HOH B 61 461 136 HOH TIP . H 4 HOH B 62 462 139 HOH TIP . H 4 HOH B 63 463 141 HOH TIP . H 4 HOH B 64 464 146 HOH TIP . H 4 HOH B 65 465 147 HOH TIP . H 4 HOH B 66 466 153 HOH TIP . H 4 HOH B 67 467 154 HOH TIP . H 4 HOH B 68 468 156 HOH TIP . H 4 HOH B 69 469 158 HOH TIP . H 4 HOH B 70 470 163 HOH TIP . H 4 HOH B 71 471 165 HOH TIP . H 4 HOH B 72 472 166 HOH TIP . H 4 HOH B 73 473 168 HOH TIP . H 4 HOH B 74 474 174 HOH TIP . H 4 HOH B 75 475 175 HOH TIP . H 4 HOH B 76 476 177 HOH TIP . H 4 HOH B 77 477 178 HOH TIP . H 4 HOH B 78 478 179 HOH TIP . H 4 HOH B 79 479 180 HOH TIP . H 4 HOH B 80 480 181 HOH TIP . H 4 HOH B 81 481 183 HOH TIP . H 4 HOH B 82 482 184 HOH TIP . H 4 HOH B 83 483 185 HOH TIP . H 4 HOH B 84 484 191 HOH TIP . H 4 HOH B 85 485 194 HOH TIP . H 4 HOH B 86 486 197 HOH TIP . H 4 HOH B 87 487 200 HOH TIP . H 4 HOH B 88 488 202 HOH TIP . H 4 HOH B 89 489 203 HOH TIP . H 4 HOH B 90 490 208 HOH TIP . H 4 HOH B 91 491 212 HOH TIP . H 4 HOH B 92 492 213 HOH TIP . H 4 HOH B 93 493 214 HOH TIP . H 4 HOH B 94 494 215 HOH TIP . H 4 HOH B 95 495 218 HOH TIP . H 4 HOH B 96 496 219 HOH TIP . H 4 HOH B 97 497 223 HOH TIP . H 4 HOH B 98 498 224 HOH TIP . H 4 HOH B 99 499 225 HOH TIP . H 4 HOH B 100 500 229 HOH TIP . H 4 HOH B 101 501 230 HOH TIP . H 4 HOH B 102 502 232 HOH TIP . H 4 HOH B 103 503 235 HOH TIP . H 4 HOH B 104 504 236 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.037 _atom_site.Cartn_y 30.276 _atom_site.Cartn_z 21.142 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #