data_4E01 # _model_server_result.job_id yXBeji9njyPTUwbZ6JyLrA _model_server_result.datetime_utc '2024-11-15 07:22:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4E01 # _exptl.entry_id 4E01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E01 _cell.length_a 127.277 _cell.length_b 127.277 _cell.length_c 73.994 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 279 A ASN 249 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc2 A O VAL 328 A VAL 298 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc3 A O ASP 330 A ASP 300 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc4 A O PHE 333 A PHE 303 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc5 A O GLY 367 A GLY 337 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O2G ANP . A ANP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 C MG MG . A MG 402 1_555 E O2A ANP . A ANP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc8 C MG MG . A MG 402 1_555 E O2B ANP . A ANP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc9 C MG MG . A MG 402 1_555 F O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc10 C MG MG . A MG 402 1_555 F O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc11 D K K . A K 403 1_555 E O1A ANP . A ANP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 32 n n PG O2G ANP sing 33 n n PG O3G ANP sing 34 n n PG N3B ANP sing 35 n n O2G HOG2 ANP sing 36 n n O3G HOG3 ANP sing 37 n n PB O1B ANP doub 38 n n PB O2B ANP sing 39 n n PB N3B ANP sing 40 n n PB O3A ANP sing 41 n n O2B HOB2 ANP sing 42 n n N3B HNB1 ANP sing 43 n n PA O1A ANP doub 44 n n PA O2A ANP sing 45 n n PA O3A ANP sing 46 n n PA O5' ANP sing 47 n n O2A HOA2 ANP sing 48 n n O5' C5' ANP sing 49 n n C5' C4' ANP sing 50 n n C5' "H5'1" ANP sing 51 n n C5' "H5'2" ANP sing 52 n n C4' O4' ANP sing 53 n n C4' C3' ANP sing 54 n n C4' H4' ANP sing 55 n n O4' C1' ANP sing 56 n n C3' O3' ANP sing 57 n n C3' C2' ANP sing 58 n n C3' H3' ANP sing 59 n n O3' HO3' ANP sing 60 n n C2' O2' ANP sing 61 n n C2' C1' ANP sing 62 n n C2' H2' ANP sing 63 n n O2' HO2' ANP sing 64 n n C1' N9 ANP sing 65 n n C1' H1' ANP sing 66 n n N9 C8 ANP sing 67 n y N9 C4 ANP sing 68 n y C8 N7 ANP doub 69 n y C8 H8 ANP sing 70 n n N7 C5 ANP sing 71 n y C5 C6 ANP sing 72 n y C5 C4 ANP doub 73 n y C6 N6 ANP sing 74 n n C6 N1 ANP doub 75 n y N6 HN61 ANP sing 76 n n N6 HN62 ANP sing 77 n n N1 C2 ANP sing 78 n y C2 N3 ANP doub 79 n y C2 H2 ANP sing 80 n n N3 C4 ANP sing 81 n y # _atom_sites.entry_id 4E01 _atom_sites.fract_transf_matrix[1][1] 0.007857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0F1 A 1 401 1 0F1 BT2 . C 3 MG A 1 402 1 MG MG . D 4 K A 1 403 1 K K . E 5 ANP A 1 404 1 ANP LIG . F 6 HOH A 1 501 1 HOH HOH . F 6 HOH A 2 502 2 HOH HOH . F 6 HOH A 3 503 3 HOH HOH . F 6 HOH A 4 504 4 HOH HOH . F 6 HOH A 5 505 5 HOH HOH . F 6 HOH A 6 506 6 HOH HOH . F 6 HOH A 7 507 7 HOH HOH . F 6 HOH A 8 508 8 HOH HOH . F 6 HOH A 9 509 9 HOH HOH . F 6 HOH A 10 510 10 HOH HOH . F 6 HOH A 11 511 11 HOH HOH . F 6 HOH A 12 512 12 HOH HOH . F 6 HOH A 13 513 13 HOH HOH . F 6 HOH A 14 514 14 HOH HOH . F 6 HOH A 15 515 15 HOH HOH . F 6 HOH A 16 516 16 HOH HOH . F 6 HOH A 17 517 17 HOH HOH . F 6 HOH A 18 518 18 HOH HOH . F 6 HOH A 19 519 19 HOH HOH . F 6 HOH A 20 520 20 HOH HOH . F 6 HOH A 21 521 21 HOH HOH . F 6 HOH A 22 522 22 HOH HOH . F 6 HOH A 23 523 26 HOH HOH . F 6 HOH A 24 524 27 HOH HOH . F 6 HOH A 25 525 28 HOH HOH . F 6 HOH A 26 526 29 HOH HOH . F 6 HOH A 27 527 31 HOH HOH . F 6 HOH A 28 528 32 HOH HOH . F 6 HOH A 29 529 33 HOH HOH . F 6 HOH A 30 530 34 HOH HOH . F 6 HOH A 31 531 35 HOH HOH . F 6 HOH A 32 532 36 HOH HOH . F 6 HOH A 33 533 37 HOH HOH . F 6 HOH A 34 534 38 HOH HOH . F 6 HOH A 35 535 39 HOH HOH . F 6 HOH A 36 536 40 HOH HOH . F 6 HOH A 37 537 41 HOH HOH . F 6 HOH A 38 538 42 HOH HOH . F 6 HOH A 39 539 43 HOH HOH . F 6 HOH A 40 540 44 HOH HOH . F 6 HOH A 41 541 45 HOH HOH . F 6 HOH A 42 542 47 HOH HOH . F 6 HOH A 43 543 48 HOH HOH . F 6 HOH A 44 544 49 HOH HOH . F 6 HOH A 45 545 50 HOH HOH . F 6 HOH A 46 546 51 HOH HOH . F 6 HOH A 47 547 52 HOH HOH . F 6 HOH A 48 548 53 HOH HOH . F 6 HOH A 49 549 54 HOH HOH . F 6 HOH A 50 550 55 HOH HOH . F 6 HOH A 51 551 56 HOH HOH . F 6 HOH A 52 552 57 HOH HOH . F 6 HOH A 53 553 58 HOH HOH . F 6 HOH A 54 554 59 HOH HOH . F 6 HOH A 55 555 60 HOH HOH . F 6 HOH A 56 556 61 HOH HOH . F 6 HOH A 57 557 62 HOH HOH . F 6 HOH A 58 558 63 HOH HOH . F 6 HOH A 59 559 64 HOH HOH . F 6 HOH A 60 560 65 HOH HOH . F 6 HOH A 61 561 66 HOH HOH . F 6 HOH A 62 562 68 HOH HOH . F 6 HOH A 63 563 71 HOH HOH . F 6 HOH A 64 564 72 HOH HOH . F 6 HOH A 65 565 73 HOH HOH . F 6 HOH A 66 566 74 HOH HOH . F 6 HOH A 67 567 75 HOH HOH . F 6 HOH A 68 568 78 HOH HOH . F 6 HOH A 69 569 79 HOH HOH . F 6 HOH A 70 570 81 HOH HOH . F 6 HOH A 71 571 82 HOH HOH . F 6 HOH A 72 572 83 HOH HOH . F 6 HOH A 73 573 84 HOH HOH . F 6 HOH A 74 574 85 HOH HOH . F 6 HOH A 75 575 86 HOH HOH . F 6 HOH A 76 576 87 HOH HOH . F 6 HOH A 77 577 88 HOH HOH . F 6 HOH A 78 578 89 HOH HOH . F 6 HOH A 79 579 90 HOH HOH . F 6 HOH A 80 580 92 HOH HOH . F 6 HOH A 81 581 93 HOH HOH . F 6 HOH A 82 582 94 HOH HOH . F 6 HOH A 83 583 96 HOH HOH . F 6 HOH A 84 584 97 HOH HOH . F 6 HOH A 85 585 98 HOH HOH . F 6 HOH A 86 586 99 HOH HOH . F 6 HOH A 87 587 101 HOH HOH . F 6 HOH A 88 588 102 HOH HOH . F 6 HOH A 89 589 103 HOH HOH . F 6 HOH A 90 590 104 HOH HOH . F 6 HOH A 91 591 106 HOH HOH . F 6 HOH A 92 592 107 HOH HOH . F 6 HOH A 93 593 109 HOH HOH . F 6 HOH A 94 594 110 HOH HOH . F 6 HOH A 95 595 112 HOH HOH . F 6 HOH A 96 596 113 HOH HOH . F 6 HOH A 97 597 116 HOH HOH . F 6 HOH A 98 598 117 HOH HOH . F 6 HOH A 99 599 118 HOH HOH . F 6 HOH A 100 600 120 HOH HOH . F 6 HOH A 101 601 121 HOH HOH . F 6 HOH A 102 602 123 HOH HOH . F 6 HOH A 103 603 124 HOH HOH . F 6 HOH A 104 604 125 HOH HOH . F 6 HOH A 105 605 126 HOH HOH . F 6 HOH A 106 606 129 HOH HOH . F 6 HOH A 107 607 130 HOH HOH . F 6 HOH A 108 608 131 HOH HOH . F 6 HOH A 109 609 133 HOH HOH . F 6 HOH A 110 610 134 HOH HOH . F 6 HOH A 111 611 135 HOH HOH . F 6 HOH A 112 612 140 HOH HOH . F 6 HOH A 113 613 147 HOH HOH . F 6 HOH A 114 614 148 HOH HOH . F 6 HOH A 115 615 149 HOH HOH . F 6 HOH A 116 616 150 HOH HOH . F 6 HOH A 117 617 151 HOH HOH . F 6 HOH A 118 618 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 5 3.337 -33.785 -2.304 1 39.84 ? PG ANP 404 A 1 HETATM 2 O O1G ANP . . . E 5 3.537 -35.308 -1.985 1 37.25 ? O1G ANP 404 A 1 HETATM 3 O O2G ANP . . . E 5 4.199 -33.023 -1.528 1 37.01 ? O2G ANP 404 A 1 HETATM 4 O O3G ANP . . . E 5 1.904 -33.337 -1.895 1 38.41 ? O3G ANP 404 A 1 HETATM 5 P PB ANP . . . E 5 4.669 -32.528 -4.465 1 35.17 ? PB ANP 404 A 1 HETATM 6 O O1B ANP . . . E 5 4.657 -32.463 -6.003 1 39.09 ? O1B ANP 404 A 1 HETATM 7 O O2B ANP . . . E 5 6.061 -33.083 -4.085 1 35.47 ? O2B ANP 404 A 1 HETATM 8 N N3B ANP . . . E 5 3.516 -33.54 -3.961 1 32.55 ? N3B ANP 404 A 1 HETATM 9 P PA ANP . . . E 5 5.437 -30.113 -3.183 1 32.78 ? PA ANP 404 A 1 HETATM 10 O O1A ANP . . . E 5 4.694 -28.99 -2.655 1 32.16 ? O1A ANP 404 A 1 HETATM 11 O O2A ANP . . . E 5 6.212 -30.651 -2.033 1 30.11 ? O2A ANP 404 A 1 HETATM 12 O O3A ANP . . . E 5 4.381 -31.088 -3.823 1 34.82 ? O3A ANP 404 A 1 HETATM 13 O O5' ANP . . . E 5 6.417 -29.649 -4.265 1 34.33 ? O5' ANP 404 A 1 HETATM 14 C C5' ANP . . . E 5 5.922 -29.069 -5.475 1 34.59 ? C5' ANP 404 A 1 HETATM 15 C C4' ANP . . . E 5 6.841 -29.14 -6.682 1 39.72 ? C4' ANP 404 A 1 HETATM 16 O O4' ANP . . . E 5 8.08 -28.492 -6.397 1 35.84 ? O4' ANP 404 A 1 HETATM 17 C C3' ANP . . . E 5 7.237 -30.536 -7.012 1 36.58 ? C3' ANP 404 A 1 HETATM 18 O O3' ANP . . . E 5 6.268 -31.321 -7.621 1 36.67 ? O3' ANP 404 A 1 HETATM 19 C C2' ANP . . . E 5 8.393 -30.315 -7.842 1 34.96 ? C2' ANP 404 A 1 HETATM 20 O O2' ANP . . . E 5 8.067 -29.933 -9.155 1 39.27 ? O2' ANP 404 A 1 HETATM 21 C C1' ANP . . . E 5 9.068 -29.193 -7.149 1 33.96 ? C1' ANP 404 A 1 HETATM 22 N N9 ANP . . . E 5 10.05 -29.344 -6.061 1 34.36 ? N9 ANP 404 A 1 HETATM 23 C C8 ANP . . . E 5 9.939 -29.34 -4.719 1 33.68 ? C8 ANP 404 A 1 HETATM 24 N N7 ANP . . . E 5 11.157 -29.576 -4.189 1 32.2 ? N7 ANP 404 A 1 HETATM 25 C C5 ANP . . . E 5 12.031 -29.747 -5.207 1 35.51 ? C5 ANP 404 A 1 HETATM 26 C C6 ANP . . . E 5 13.407 -30.01 -5.288 1 31.05 ? C6 ANP 404 A 1 HETATM 27 N N6 ANP . . . E 5 14.201 -30.168 -4.086 1 28.93 ? N6 ANP 404 A 1 HETATM 28 N N1 ANP . . . E 5 13.997 -30.122 -6.493 1 31.7 ? N1 ANP 404 A 1 HETATM 29 C C2 ANP . . . E 5 13.279 -29.997 -7.618 1 31.31 ? C2 ANP 404 A 1 HETATM 30 N N3 ANP . . . E 5 11.963 -29.746 -7.581 1 34.7 ? N3 ANP 404 A 1 HETATM 31 C C4 ANP . . . E 5 11.324 -29.611 -6.403 1 34.85 ? C4 ANP 404 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #