data_4E02 # _model_server_result.job_id 6eKYRP0H0dLqmSp30O1fJw _model_server_result.datetime_utc '2024-11-15 17:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4E02 # _exptl.entry_id 4E02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E02 _cell.length_a 127.462 _cell.length_b 127.462 _cell.length_c 73.499 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 279 A ASN 249 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O VAL 328 A VAL 298 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc3 A O ASP 330 A ASP 300 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc4 A O PHE 333 A PHE 303 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc5 A O GLY 367 A GLY 337 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc6 B O1A ANP . A ANP 401 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc7 B O2B ANP . A ANP 401 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc8 B O2A ANP . A ANP 401 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc9 B O2G ANP . A ANP 401 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc10 E MG MG . A MG 404 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 E MG MG . A MG 404 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4E02 _atom_sites.fract_transf_matrix[1][1] 0.007845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1 ANP LIG . C 3 K A 1 402 1 K K . D 4 WJ1 A 1 403 1 WJ1 WJ1 . E 5 MG A 1 404 1 MG MG . F 6 HOH A 1 501 1 HOH HOH . F 6 HOH A 2 502 2 HOH HOH . F 6 HOH A 3 503 3 HOH HOH . F 6 HOH A 4 504 4 HOH HOH . F 6 HOH A 5 505 5 HOH HOH . F 6 HOH A 6 506 6 HOH HOH . F 6 HOH A 7 507 7 HOH HOH . F 6 HOH A 8 508 8 HOH HOH . F 6 HOH A 9 509 9 HOH HOH . F 6 HOH A 10 510 10 HOH HOH . F 6 HOH A 11 511 11 HOH HOH . F 6 HOH A 12 512 12 HOH HOH . F 6 HOH A 13 513 13 HOH HOH . F 6 HOH A 14 514 14 HOH HOH . F 6 HOH A 15 515 15 HOH HOH . F 6 HOH A 16 516 16 HOH HOH . F 6 HOH A 17 517 17 HOH HOH . F 6 HOH A 18 518 18 HOH HOH . F 6 HOH A 19 519 19 HOH HOH . F 6 HOH A 20 520 20 HOH HOH . F 6 HOH A 21 521 21 HOH HOH . F 6 HOH A 22 522 22 HOH HOH . F 6 HOH A 23 523 23 HOH HOH . F 6 HOH A 24 524 24 HOH HOH . F 6 HOH A 25 525 25 HOH HOH . F 6 HOH A 26 526 26 HOH HOH . F 6 HOH A 27 527 27 HOH HOH . F 6 HOH A 28 528 28 HOH HOH . F 6 HOH A 29 529 29 HOH HOH . F 6 HOH A 30 530 31 HOH HOH . F 6 HOH A 31 531 32 HOH HOH . F 6 HOH A 32 532 33 HOH HOH . F 6 HOH A 33 533 34 HOH HOH . F 6 HOH A 34 534 35 HOH HOH . F 6 HOH A 35 535 36 HOH HOH . F 6 HOH A 36 536 37 HOH HOH . F 6 HOH A 37 537 38 HOH HOH . F 6 HOH A 38 538 39 HOH HOH . F 6 HOH A 39 539 40 HOH HOH . F 6 HOH A 40 540 41 HOH HOH . F 6 HOH A 41 541 42 HOH HOH . F 6 HOH A 42 542 43 HOH HOH . F 6 HOH A 43 543 44 HOH HOH . F 6 HOH A 44 544 45 HOH HOH . F 6 HOH A 45 545 46 HOH HOH . F 6 HOH A 46 546 48 HOH HOH . F 6 HOH A 47 547 49 HOH HOH . F 6 HOH A 48 548 50 HOH HOH . F 6 HOH A 49 549 51 HOH HOH . F 6 HOH A 50 550 52 HOH HOH . F 6 HOH A 51 551 53 HOH HOH . F 6 HOH A 52 552 54 HOH HOH . F 6 HOH A 53 553 55 HOH HOH . F 6 HOH A 54 554 56 HOH HOH . F 6 HOH A 55 555 57 HOH HOH . F 6 HOH A 56 556 58 HOH HOH . F 6 HOH A 57 557 59 HOH HOH . F 6 HOH A 58 558 61 HOH HOH . F 6 HOH A 59 559 62 HOH HOH . F 6 HOH A 60 560 63 HOH HOH . F 6 HOH A 61 561 64 HOH HOH . F 6 HOH A 62 562 65 HOH HOH . F 6 HOH A 63 563 66 HOH HOH . F 6 HOH A 64 564 67 HOH HOH . F 6 HOH A 65 565 68 HOH HOH . F 6 HOH A 66 566 70 HOH HOH . F 6 HOH A 67 567 71 HOH HOH . F 6 HOH A 68 568 72 HOH HOH . F 6 HOH A 69 569 73 HOH HOH . F 6 HOH A 70 570 75 HOH HOH . F 6 HOH A 71 571 76 HOH HOH . F 6 HOH A 72 572 78 HOH HOH . F 6 HOH A 73 573 79 HOH HOH . F 6 HOH A 74 574 81 HOH HOH . F 6 HOH A 75 575 82 HOH HOH . F 6 HOH A 76 576 83 HOH HOH . F 6 HOH A 77 577 84 HOH HOH . F 6 HOH A 78 578 85 HOH HOH . F 6 HOH A 79 579 86 HOH HOH . F 6 HOH A 80 580 87 HOH HOH . F 6 HOH A 81 581 88 HOH HOH . F 6 HOH A 82 582 89 HOH HOH . F 6 HOH A 83 583 90 HOH HOH . F 6 HOH A 84 584 92 HOH HOH . F 6 HOH A 85 585 93 HOH HOH . F 6 HOH A 86 586 94 HOH HOH . F 6 HOH A 87 587 95 HOH HOH . F 6 HOH A 88 588 96 HOH HOH . F 6 HOH A 89 589 97 HOH HOH . F 6 HOH A 90 590 101 HOH HOH . F 6 HOH A 91 591 103 HOH HOH . F 6 HOH A 92 592 106 HOH HOH . F 6 HOH A 93 593 107 HOH HOH . F 6 HOH A 94 594 108 HOH HOH . F 6 HOH A 95 595 109 HOH HOH . F 6 HOH A 96 596 110 HOH HOH . F 6 HOH A 97 597 112 HOH HOH . F 6 HOH A 98 598 115 HOH HOH . F 6 HOH A 99 599 116 HOH HOH . F 6 HOH A 100 600 118 HOH HOH . F 6 HOH A 101 601 120 HOH HOH . F 6 HOH A 102 602 121 HOH HOH . F 6 HOH A 103 603 122 HOH HOH . F 6 HOH A 104 604 123 HOH HOH . F 6 HOH A 105 605 124 HOH HOH . F 6 HOH A 106 606 125 HOH HOH . F 6 HOH A 107 607 127 HOH HOH . F 6 HOH A 108 608 128 HOH HOH . F 6 HOH A 109 609 130 HOH HOH . F 6 HOH A 110 610 131 HOH HOH . F 6 HOH A 111 611 132 HOH HOH . F 6 HOH A 112 612 133 HOH HOH . F 6 HOH A 113 613 136 HOH HOH . F 6 HOH A 114 614 137 HOH HOH . F 6 HOH A 115 615 138 HOH HOH . F 6 HOH A 116 616 139 HOH HOH . F 6 HOH A 117 617 140 HOH HOH . F 6 HOH A 118 618 141 HOH HOH . F 6 HOH A 119 619 142 HOH HOH . F 6 HOH A 120 620 143 HOH HOH . F 6 HOH A 121 621 145 HOH HOH . F 6 HOH A 122 622 146 HOH HOH . F 6 HOH A 123 623 147 HOH HOH . F 6 HOH A 124 624 148 HOH HOH . F 6 HOH A 125 625 149 HOH HOH . F 6 HOH A 126 626 150 HOH HOH . F 6 HOH A 127 627 151 HOH HOH . F 6 HOH A 128 628 153 HOH HOH . F 6 HOH A 129 629 160 HOH HOH . F 6 HOH A 130 630 161 HOH HOH . F 6 HOH A 131 631 162 HOH HOH . F 6 HOH A 132 632 163 HOH HOH . F 6 HOH A 133 633 164 HOH HOH . F 6 HOH A 134 634 166 HOH HOH . F 6 HOH A 135 635 167 HOH HOH . F 6 HOH A 136 636 168 HOH HOH . F 6 HOH A 137 637 170 HOH HOH . F 6 HOH A 138 638 173 HOH HOH . F 6 HOH A 139 639 174 HOH HOH . F 6 HOH A 140 640 175 HOH HOH . F 6 HOH A 141 641 179 HOH HOH . F 6 HOH A 142 642 181 HOH HOH . F 6 HOH A 143 643 182 HOH HOH . F 6 HOH A 144 644 184 HOH HOH . F 6 HOH A 145 645 188 HOH HOH . F 6 HOH A 146 646 189 HOH HOH . F 6 HOH A 147 647 190 HOH HOH . F 6 HOH A 148 648 192 HOH HOH . F 6 HOH A 149 649 194 HOH HOH . F 6 HOH A 150 650 195 HOH HOH . F 6 HOH A 151 651 196 HOH HOH . F 6 HOH A 152 652 198 HOH HOH . F 6 HOH A 153 653 208 HOH HOH . F 6 HOH A 154 654 209 HOH HOH . F 6 HOH A 155 655 214 HOH HOH . F 6 HOH A 156 656 231 HOH HOH . F 6 HOH A 157 657 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 3.402 -33.941 -2.358 1 31.51 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 3.589 -35.465 -2.046 1 34.03 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 4.257 -33.178 -1.568 1 32.92 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 1.961 -33.486 -1.971 1 34.93 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 4.772 -32.674 -4.516 1 31.98 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 4.828 -32.656 -6.037 1 34.59 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 6.163 -33.176 -4.083 1 31.85 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 3.612 -33.699 -4.016 1 31.68 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 5.504 -30.235 -3.236 1 28.76 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 4.766 -29.134 -2.645 1 28.07 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 6.294 -30.875 -2.132 1 25.76 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 4.451 -31.25 -3.85 1 36.98 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 6.494 -29.761 -4.323 1 33.2 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 6.045 -29.163 -5.555 1 29.92 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 6.982 -29.26 -6.754 1 34.24 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 8.225 -28.639 -6.466 1 30.19 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 7.361 -30.661 -7.046 1 35.24 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 6.349 -31.399 -7.623 1 32.05 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 8.524 -30.471 -7.88 1 31.33 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 8.17 -30.17 -9.203 1 35.82 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 9.206 -29.33 -7.233 1 34.31 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 10.17 -29.48 -6.131 1 30.06 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 10.033 -29.502 -4.792 1 29.03 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 11.25 -29.732 -4.254 1 27.31 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 12.137 -29.864 -5.269 1 27.94 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 13.512 -30.106 -5.329 1 23.55 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 14.289 -30.282 -4.112 1 23.05 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 14.115 -30.189 -6.527 1 26.68 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 13.418 -30.047 -7.67 1 29.02 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 12.1 -29.823 -7.657 1 29.71 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 11.45 -29.723 -6.472 1 25.31 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 31 #