data_4E0K # _model_server_result.job_id vSLVnmzFWABVqXJW6wKpPQ _model_server_result.datetime_utc '2024-11-24 17:27:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 4E0K # _exptl.entry_id 4E0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4E0K _cell.length_a 62.37 _cell.length_b 62.37 _cell.length_c 11.73 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,I 1 1 C,D,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 2 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 2 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.831 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4E0K _atom_sites.fract_transf_matrix[1][1] 0.016033 _atom_sites.fract_transf_matrix[1][2] 0.009257 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.085251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PE4 B 1 101 6061 PE4 PE4 . F 3 NA B 1 102 1 NA NA . G 2 PE4 C 1 101 6061 PE4 PE4 . H 4 HOH A 1 101 8 HOH HOH . H 4 HOH A 2 102 14 HOH HOH . H 4 HOH A 3 103 18 HOH HOH . H 4 HOH A 4 104 22 HOH HOH . H 4 HOH A 5 105 26 HOH HOH . H 4 HOH A 6 106 28 HOH HOH . H 4 HOH A 7 107 30 HOH HOH . H 4 HOH A 8 108 39 HOH HOH . H 4 HOH A 9 109 41 HOH HOH . H 4 HOH A 10 110 50 HOH HOH . H 4 HOH A 11 111 52 HOH HOH . H 4 HOH A 12 112 56 HOH HOH . I 4 HOH B 1 201 3 HOH HOH . I 4 HOH B 2 202 5 HOH HOH . I 4 HOH B 3 203 12 HOH HOH . I 4 HOH B 4 204 17 HOH HOH . I 4 HOH B 5 205 31 HOH HOH . I 4 HOH B 6 206 32 HOH HOH . I 4 HOH B 7 207 33 HOH HOH . I 4 HOH B 8 208 36 HOH HOH . I 4 HOH B 9 209 43 HOH HOH . I 4 HOH B 10 210 45 HOH HOH . I 4 HOH B 11 211 47 HOH HOH . I 4 HOH B 12 212 48 HOH HOH . I 4 HOH B 13 213 51 HOH HOH . J 4 HOH C 1 201 1 HOH HOH . J 4 HOH C 2 202 4 HOH HOH . J 4 HOH C 3 203 7 HOH HOH . J 4 HOH C 4 204 13 HOH HOH . J 4 HOH C 5 205 15 HOH HOH . J 4 HOH C 6 206 16 HOH HOH . J 4 HOH C 7 207 21 HOH HOH . J 4 HOH C 8 208 23 HOH HOH . J 4 HOH C 9 209 24 HOH HOH . J 4 HOH C 10 210 29 HOH HOH . J 4 HOH C 11 211 44 HOH HOH . J 4 HOH C 12 212 46 HOH HOH . J 4 HOH C 13 213 10 HOH HOH . K 4 HOH D 1 101 2 HOH HOH . K 4 HOH D 2 102 6 HOH HOH . K 4 HOH D 3 103 9 HOH HOH . K 4 HOH D 4 104 11 HOH HOH . K 4 HOH D 5 105 20 HOH HOH . K 4 HOH D 6 106 34 HOH HOH . K 4 HOH D 7 107 42 HOH HOH . K 4 HOH D 8 108 49 HOH HOH . K 4 HOH D 9 109 53 HOH HOH . K 4 HOH D 10 110 54 HOH HOH . K 4 HOH D 11 111 55 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -16.06 _atom_site.Cartn_y -21.124 _atom_site.Cartn_z 15.685 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #