data_4E0L # _model_server_result.job_id 8HaT-n4sBFu07uXf6mQr2A _model_server_result.datetime_utc '2024-11-24 19:33:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 4E0L # _exptl.entry_id 4E0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.76 _cell.angle_gamma 90 _cell.entry_id 4E0L _cell.length_a 66.99 _cell.length_b 40.78 _cell.length_c 23.99 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ORN 1 A ORN 0 1_555 A N PHE 2 A PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale2 A NE ORN 1 A ORN 0 1_555 A C ALA 14 A ALA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 A C THR 8 A THR 7 1_555 A NE ORN 9 A ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C ORN 9 A ORN 8 1_555 A N LYS 10 A LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale5 A C ASN 11 A ASN 10 1_555 A N HAO 12 A HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale6 A C HAO 12 A HAO 11 1_555 A N SER 13 A SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale7 B C ORN 1 B ORN 0 1_555 B N PHE 2 B PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale8 B NE ORN 1 B ORN 0 1_555 B C ALA 14 B ALA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale9 B C THR 8 B THR 7 1_555 B NE ORN 9 B ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? covale ? covale10 B C ORN 9 B ORN 8 1_555 B N LYS 10 B LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale11 B C ASN 11 B ASN 10 1_555 B N HAO 12 B HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale12 B C HAO 12 B HAO 11 1_555 B N SER 13 B SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale13 C C ORN 1 C ORN 0 1_555 C N PHE 2 C PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale14 C NE ORN 1 C ORN 0 1_555 C C ALA 14 C ALA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale15 C C THR 8 C THR 7 1_555 C NE ORN 9 C ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale16 C C ORN 9 C ORN 8 1_555 C N LYS 10 C LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale17 C C ASN 11 C ASN 10 1_555 C N HAO 12 C HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale18 C C HAO 12 C HAO 11 1_555 C N SER 13 C SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale19 D C ORN 1 D ORN 0 1_555 D N PHE 2 D PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale20 D NE ORN 1 D ORN 0 1_555 D C ALA 14 D ALA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale21 D C THR 8 D THR 7 1_555 D NE ORN 9 D ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale22 D C ORN 9 D ORN 8 1_555 D N LYS 10 D LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale23 D C ASN 11 D ASN 10 1_555 D N HAO 12 D HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale24 D C HAO 12 D HAO 11 1_555 D N SER 13 D SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 105 n n C1 H11 MPD sing 106 n n C1 H12 MPD sing 107 n n C1 H13 MPD sing 108 n n C2 O2 MPD sing 109 n n C2 CM MPD sing 110 n n C2 C3 MPD sing 111 n n O2 HO2 MPD sing 112 n n CM HM1 MPD sing 113 n n CM HM2 MPD sing 114 n n CM HM3 MPD sing 115 n n C3 C4 MPD sing 116 n n C3 H31 MPD sing 117 n n C3 H32 MPD sing 118 n n C4 O4 MPD sing 119 n n C4 C5 MPD sing 120 n n C4 H4 MPD sing 121 n n O4 HO4 MPD sing 122 n n C5 H51 MPD sing 123 n n C5 H52 MPD sing 124 n n C5 H53 MPD sing 125 n n # _atom_sites.entry_id 4E0L _atom_sites.fract_transf_matrix[1][1] 0.014928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0023 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.042176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MPD A 1 101 1 MPD MPD . F 2 MPD C 1 101 1 MPD MPD . G 3 HOH A 1 201 3 HOH HOH . G 3 HOH A 2 202 8 HOH HOH . G 3 HOH A 3 203 12 HOH HOH . G 3 HOH A 4 204 16 HOH HOH . H 3 HOH B 1 101 1 HOH HOH . H 3 HOH B 2 102 5 HOH HOH . H 3 HOH B 3 103 9 HOH HOH . H 3 HOH B 4 104 10 HOH HOH . H 3 HOH B 5 105 15 HOH HOH . I 3 HOH C 1 201 6 HOH HOH . J 3 HOH D 1 101 2 HOH HOH . J 3 HOH D 2 102 4 HOH HOH . J 3 HOH D 3 103 7 HOH HOH . J 3 HOH D 4 104 11 HOH HOH . J 3 HOH D 5 105 13 HOH HOH . J 3 HOH D 6 106 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 2 12.343 6.454 13.455 1 47.41 ? C1 MPD 101 A 1 HETATM 2 C C2 MPD . . . E 2 11.486 5.389 14.132 1 47.39 ? C2 MPD 101 A 1 HETATM 3 O O2 MPD . . . E 2 11.532 5.659 15.545 1 46.64 ? O2 MPD 101 A 1 HETATM 4 C CM MPD . . . E 2 12.09 4 13.927 1 46.86 ? CM MPD 101 A 1 HETATM 5 C C3 MPD . . . E 2 9.985 5.494 13.678 1 49.99 ? C3 MPD 101 A 1 HETATM 6 C C4 MPD . . . E 2 9.481 4.649 12.475 1 52.28 ? C4 MPD 101 A 1 HETATM 7 O O4 MPD . . . E 2 8.128 4.239 12.706 1 54.57 ? O4 MPD 101 A 1 HETATM 8 C C5 MPD . . . E 2 9.561 5.42 11.179 1 52 ? C5 MPD 101 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 738 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #