data_4E0L
#
_model_server_result.job_id            ITEsqx56KHLIAn0TYZ1Y4Q 
_model_server_result.datetime_utc      '2024-11-24 19:40:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4e0l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":101}' 
#
_entry.id    4E0L 
#
_exptl.entry_id    4E0L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.76 
_cell.angle_gamma         90 
_cell.entry_id            4E0L 
_cell.length_a            66.99 
_cell.length_b            40.78 
_cell.length_c            23.99 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4E0L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H 1 1 
C,D,F,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ORN 1 A ORN 0 1_555 A N PHE 2 A PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? 
covale ? covale2 A NE ORN 1 A ORN 0 1_555 A C ALA 14 A ALA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale3 A C THR 8 A THR 7 1_555 A NE ORN 9 A ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 A C ORN 9 A ORN 8 1_555 A N LYS 10 A LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale5 A C ASN 11 A ASN 10 1_555 A N HAO 12 A HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale6 A C HAO 12 A HAO 11 1_555 A N SER 13 A SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale7 B C ORN 1 B ORN 0 1_555 B N PHE 2 B PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? 
covale ? covale8 B NE ORN 1 B ORN 0 1_555 B C ALA 14 B ALA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale9 B C THR 8 B THR 7 1_555 B NE ORN 9 B ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
covale ? covale10 B C ORN 9 B ORN 8 1_555 B N LYS 10 B LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? 
covale ? covale11 B C ASN 11 B ASN 10 1_555 B N HAO 12 B HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? 
covale ? covale12 B C HAO 12 B HAO 11 1_555 B N SER 13 B SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? 
covale ? covale13 C C ORN 1 C ORN 0 1_555 C N PHE 2 C PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? 
covale ? covale14 C NE ORN 1 C ORN 0 1_555 C C ALA 14 C ALA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
covale ? covale15 C C THR 8 C THR 7 1_555 C NE ORN 9 C ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? 
covale ? covale16 C C ORN 9 C ORN 8 1_555 C N LYS 10 C LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale17 C C ASN 11 C ASN 10 1_555 C N HAO 12 C HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? 
covale ? covale18 C C HAO 12 C HAO 11 1_555 C N SER 13 C SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale19 D C ORN 1 D ORN 0 1_555 D N PHE 2 D PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale20 D NE ORN 1 D ORN 0 1_555 D C ALA 14 D ALA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale21 D C THR 8 D THR 7 1_555 D NE ORN 9 D ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale22 D C ORN 9 D ORN 8 1_555 D N LYS 10 D LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? 
covale ? covale23 D C ASN 11 D ASN 10 1_555 D N HAO 12 D HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale24 D C HAO 12 D HAO 11 1_555 D N SER 13 D SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 105 n n 
C1 H11 MPD sing 106 n n 
C1 H12 MPD sing 107 n n 
C1 H13 MPD sing 108 n n 
C2 O2 MPD sing 109 n n 
C2 CM MPD sing 110 n n 
C2 C3 MPD sing 111 n n 
O2 HO2 MPD sing 112 n n 
CM HM1 MPD sing 113 n n 
CM HM2 MPD sing 114 n n 
CM HM3 MPD sing 115 n n 
C3 C4 MPD sing 116 n n 
C3 H31 MPD sing 117 n n 
C3 H32 MPD sing 118 n n 
C4 O4 MPD sing 119 n n 
C4 C5 MPD sing 120 n n 
C4 H4 MPD sing 121 n n 
O4 HO4 MPD sing 122 n n 
C5 H51 MPD sing 123 n n 
C5 H52 MPD sing 124 n n 
C5 H53 MPD sing 125 n n 
#
_atom_sites.entry_id                     4E0L 
_atom_sites.fract_transf_matrix[1][1]    0.014928 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0023 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.042176 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MPD A 1 101 1 MPD MPD . 
F 2 MPD C 1 101 1 MPD MPD . 
G 3 HOH A 1 201 3 HOH HOH . 
G 3 HOH A 2 202 8 HOH HOH . 
G 3 HOH A 3 203 12 HOH HOH . 
G 3 HOH A 4 204 16 HOH HOH . 
H 3 HOH B 1 101 1 HOH HOH . 
H 3 HOH B 2 102 5 HOH HOH . 
H 3 HOH B 3 103 9 HOH HOH . 
H 3 HOH B 4 104 10 HOH HOH . 
H 3 HOH B 5 105 15 HOH HOH . 
I 3 HOH C 1 201 6 HOH HOH . 
J 3 HOH D 1 101 2 HOH HOH . 
J 3 HOH D 2 102 4 HOH HOH . 
J 3 HOH D 3 103 7 HOH HOH . 
J 3 HOH D 4 104 11 HOH HOH . 
J 3 HOH D 5 105 13 HOH HOH . 
J 3 HOH D 6 106 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . F 2 18.075 -14.012 1.994 1 32.6 ? C1 MPD 101 C 1 
HETATM 2 C C2 MPD . . . F 2 19.079 -13.018 2.568 1 32.43 ? C2 MPD 101 C 1 
HETATM 3 O O2 MPD . . . F 2 18.559 -11.69 2.351 1 35.84 ? O2 MPD 101 C 1 
HETATM 4 C CM MPD . . . F 2 19.198 -13.202 4.074 1 31.47 ? CM MPD 101 C 1 
HETATM 5 C C3 MPD . . . F 2 20.458 -13.235 1.831 1 29.15 ? C3 MPD 101 C 1 
HETATM 6 C C4 MPD . . . F 2 21.617 -12.271 2.221 1 25.15 ? C4 MPD 101 C 1 
HETATM 7 O O4 MPD . . . F 2 22.195 -12.722 3.451 1 24.18 ? O4 MPD 101 C 1 
HETATM 8 C C5 MPD . . . F 2 22.685 -12.222 1.155 1 21.28 ? C5 MPD 101 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#