data_4E0U # _model_server_result.job_id jtDMZLusQY5fziHxxqlwjA _model_server_result.datetime_utc '2024-11-05 03:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 4E0U # _exptl.entry_id 4E0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 305.331 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-(1H-indol-3-ylmethyl)-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E0U _cell.length_a 137.73 _cell.length_b 137.73 _cell.length_c 170.51 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1,2 B,I,J,K,L,M,O 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 357 A LEU 369 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A O ILE 360 A ILE 372 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A OE2 GLU 362 A GLU 374 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 A O THR 402 A THR 414 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc5 A O GLN 405 A GLN 417 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C18 H15 N3 O2' _chem_comp.formula_weight 305.331 _chem_comp.id 0MV _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-(1H-indol-3-ylmethyl)-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 0MV doub 1 n n CZ3 CE3 0MV doub 2 n y CZ3 CH2 0MV sing 3 n y CE3 CD2 0MV sing 4 n y C NAM 0MV sing 5 n n C CA 0MV sing 6 n n NAM CAS 0MV sing 7 n n CAG CAS 0MV doub 8 n y CAG CAC 0MV sing 9 n y CB CA 0MV sing 10 n n CB CG 0MV sing 11 n n CH2 CZ2 0MV doub 12 n y CA N 0MV sing 13 n n CD2 CG 0MV sing 14 n y CD2 CE2 0MV doub 15 n y CAS CAT 0MV sing 16 n y CAC CAD 0MV doub 17 n y CG CD1 0MV doub 18 n y CZ2 CE2 0MV sing 19 n y CE2 NE1 0MV sing 20 n y CD1 NE1 0MV sing 21 n y CAT CAH 0MV doub 22 n y CAT CAP 0MV sing 23 n n CAD CAH 0MV sing 24 n y N CAP 0MV sing 25 n n CAP OAA 0MV doub 26 n n NAM H1 0MV sing 27 n n CAG H2 0MV sing 28 n n CAC H3 0MV sing 29 n n CAD H4 0MV sing 30 n n CAH H5 0MV sing 31 n n N H6 0MV sing 32 n n CA H7 0MV sing 33 n n CB H8 0MV sing 34 n n CB H9 0MV sing 35 n n CE3 H10 0MV sing 36 n n CZ3 H11 0MV sing 37 n n CH2 H12 0MV sing 38 n n CZ2 H13 0MV sing 39 n n NE1 H14 0MV sing 40 n n CD1 H15 0MV sing 41 n n # _atom_sites.entry_id 4E0U _atom_sites.fract_transf_matrix[1][1] 0.007261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0MV A 1 501 501 0MV 0MV . D 3 PIS A 1 502 502 PIS PIS . E 4 IMD A 1 503 503 IMD IMD . F 5 EDO A 1 504 504 EDO EDO . G 6 NA A 1 505 505 NA NA . H 5 EDO A 1 506 506 EDO EDO . I 2 0MV B 1 501 501 0MV 0MV . J 3 PIS B 1 502 502 PIS PIS . K 5 EDO B 1 503 503 EDO EDO . L 4 IMD B 1 504 504 IMD IMD . M 5 EDO B 1 505 505 EDO EDO . N 7 HOH A 1 601 601 HOH HOH . N 7 HOH A 2 602 602 HOH HOH . N 7 HOH A 3 603 603 HOH HOH . N 7 HOH A 4 604 604 HOH HOH . N 7 HOH A 5 605 605 HOH HOH . N 7 HOH A 6 606 606 HOH HOH . N 7 HOH A 7 607 607 HOH HOH . N 7 HOH A 8 608 608 HOH HOH . N 7 HOH A 9 609 609 HOH HOH . N 7 HOH A 10 610 610 HOH HOH . N 7 HOH A 11 611 611 HOH HOH . N 7 HOH A 12 612 612 HOH HOH . N 7 HOH A 13 613 613 HOH HOH . N 7 HOH A 14 614 614 HOH HOH . N 7 HOH A 15 615 615 HOH HOH . N 7 HOH A 16 616 616 HOH HOH . N 7 HOH A 17 617 617 HOH HOH . N 7 HOH A 18 618 618 HOH HOH . N 7 HOH A 19 619 619 HOH HOH . N 7 HOH A 20 620 620 HOH HOH . N 7 HOH A 21 621 621 HOH HOH . N 7 HOH A 22 622 622 HOH HOH . O 7 HOH B 1 601 601 HOH HOH . O 7 HOH B 2 602 602 HOH HOH . O 7 HOH B 3 603 603 HOH HOH . O 7 HOH B 4 604 604 HOH HOH . O 7 HOH B 5 605 605 HOH HOH . O 7 HOH B 6 606 606 HOH HOH . O 7 HOH B 7 607 607 HOH HOH . O 7 HOH B 8 608 608 HOH HOH . O 7 HOH B 9 609 609 HOH HOH . O 7 HOH B 10 610 610 HOH HOH . O 7 HOH B 11 611 611 HOH HOH . O 7 HOH B 12 612 612 HOH HOH . O 7 HOH B 13 613 613 HOH HOH . O 7 HOH B 14 614 614 HOH HOH . O 7 HOH B 15 615 615 HOH HOH . O 7 HOH B 16 616 616 HOH HOH . O 7 HOH B 17 617 617 HOH HOH . O 7 HOH B 18 618 618 HOH HOH . O 7 HOH B 19 619 619 HOH HOH . O 7 HOH B 20 620 620 HOH HOH . O 7 HOH B 21 621 621 HOH HOH . O 7 HOH B 22 622 622 HOH HOH . O 7 HOH B 23 623 623 HOH HOH . O 7 HOH B 24 624 624 HOH HOH . O 7 HOH B 25 625 625 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 0MV . . . I 2 -31.856 -16.084 -30.519 1 81.84 ? O 0MV 501 B 1 HETATM 2 C C 0MV . . . I 2 -31.424 -15.902 -29.377 1 81.05 ? C 0MV 501 B 1 HETATM 3 N NAM 0MV . . . I 2 -30.445 -14.91 -29.229 1 81.72 ? NAM 0MV 501 B 1 HETATM 4 C CAS 0MV . . . I 2 -29.847 -14.596 -27.992 1 81.66 ? CAS 0MV 501 B 1 HETATM 5 C CAG 0MV . . . I 2 -28.49 -14.329 -28.108 1 82.23 ? CAG 0MV 501 B 1 HETATM 6 C CAC 0MV . . . I 2 -27.757 -14.014 -26.974 1 82.11 ? CAC 0MV 501 B 1 HETATM 7 C CAD 0MV . . . I 2 -28.38 -13.966 -25.728 1 80.51 ? CAD 0MV 501 B 1 HETATM 8 C CAH 0MV . . . I 2 -29.732 -14.236 -25.61 1 80.14 ? CAH 0MV 501 B 1 HETATM 9 C CAT 0MV . . . I 2 -30.472 -14.545 -26.748 1 80.95 ? CAT 0MV 501 B 1 HETATM 10 C CAP 0MV . . . I 2 -31.825 -14.816 -26.523 1 80.68 ? CAP 0MV 501 B 1 HETATM 11 O OAA 0MV . . . I 2 -32.471 -14.183 -25.68 1 79.9 ? OAA 0MV 501 B 1 HETATM 12 N N 0MV . . . I 2 -32.5 -15.807 -27.251 1 79.98 ? N 0MV 501 B 1 HETATM 13 C CA 0MV . . . I 2 -31.858 -16.684 -28.273 1 79.84 ? CA 0MV 501 B 1 HETATM 14 C CB 0MV . . . I 2 -32.732 -17.883 -28.638 1 77.93 ? CB 0MV 501 B 1 HETATM 15 C CG 0MV . . . I 2 -32.864 -18.672 -27.31 1 75.48 ? CG 0MV 501 B 1 HETATM 16 C CD2 0MV . . . I 2 -31.902 -19.371 -26.689 1 74.85 ? CD2 0MV 501 B 1 HETATM 17 C CE3 0MV . . . I 2 -30.612 -19.618 -26.997 1 72.38 ? CE3 0MV 501 B 1 HETATM 18 C CZ3 0MV . . . I 2 -29.83 -20.408 -26.156 1 71.2 ? CZ3 0MV 501 B 1 HETATM 19 C CH2 0MV . . . I 2 -30.406 -20.918 -25.002 1 71.72 ? CH2 0MV 501 B 1 HETATM 20 C CZ2 0MV . . . I 2 -31.746 -20.632 -24.729 1 71.58 ? CZ2 0MV 501 B 1 HETATM 21 C CE2 0MV . . . I 2 -32.459 -19.871 -25.567 1 73.09 ? CE2 0MV 501 B 1 HETATM 22 N NE1 0MV . . . I 2 -33.737 -19.471 -25.521 1 73.14 ? NE1 0MV 501 B 1 HETATM 23 C CD1 0MV . . . I 2 -33.979 -18.723 -26.592 1 73.3 ? CD1 0MV 501 B 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 23 #