data_4E1B # _model_server_result.job_id GKORHRyshAgIuGZ_6EaWoA _model_server_result.datetime_utc '2024-11-05 01:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2002}' # _entry.id 4E1B # _exptl.entry_id 4E1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.335 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description threonylcarbamoyladenylate _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E1B _cell.length_a 85.391 _cell.length_b 120.843 _cell.length_c 67.552 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 122 A ARG 122 1_555 A N MSE 123 A MSE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale2 A C MSE 123 A MSE 123 1_555 A N PRO 124 A PRO 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale3 A C ILE 314 A ILE 314 1_555 A N MSE 315 A MSE 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale4 A C MSE 315 A MSE 315 1_555 A N ILE 316 A ILE 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ILE 327 A ILE 327 1_555 A N MSE 328 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 328 A MSE 328 1_555 A N ASN 329 A ASN 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? metalc ? metalc1 A OG SER 144 A SER 144 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 B MG MG . A MG 2001 1_555 C OP3 TXA . A TXA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 B MG MG . A MG 2001 1_555 D O HOH . A HOH 2132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 B MG MG . A MG 2001 1_555 D O HOH . A HOH 2123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 B MG MG . A MG 2001 1_555 D O HOH . A HOH 2107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc6 B MG MG . A MG 2001 1_555 D O HOH . A HOH 2253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? # _chem_comp.formula 'C15 H21 N6 O11 P' _chem_comp.formula_weight 492.335 _chem_comp.id TXA _chem_comp.mon_nstd_flag . _chem_comp.name threonylcarbamoyladenylate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4E1B _atom_sites.fract_transf_matrix[1][1] 0.011711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2001 2001 MG MG . C 3 TXA A 1 2002 1 TXA TXA . D 4 HOH A 1 2101 2002 HOH HOH . D 4 HOH A 2 2102 2003 HOH HOH . D 4 HOH A 3 2103 2004 HOH HOH . D 4 HOH A 4 2104 2005 HOH HOH . D 4 HOH A 5 2105 2006 HOH HOH . D 4 HOH A 6 2106 2007 HOH HOH . D 4 HOH A 7 2107 2008 HOH HOH . D 4 HOH A 8 2108 2009 HOH HOH . D 4 HOH A 9 2109 2010 HOH HOH . D 4 HOH A 10 2110 2011 HOH HOH . D 4 HOH A 11 2111 2012 HOH HOH . D 4 HOH A 12 2112 2013 HOH HOH . D 4 HOH A 13 2113 2014 HOH HOH . D 4 HOH A 14 2114 2015 HOH HOH . D 4 HOH A 15 2115 2016 HOH HOH . D 4 HOH A 16 2116 2017 HOH HOH . D 4 HOH A 17 2117 2018 HOH HOH . D 4 HOH A 18 2118 2019 HOH HOH . D 4 HOH A 19 2119 2020 HOH HOH . D 4 HOH A 20 2120 2021 HOH HOH . D 4 HOH A 21 2121 2022 HOH HOH . D 4 HOH A 22 2122 2023 HOH HOH . D 4 HOH A 23 2123 2024 HOH HOH . D 4 HOH A 24 2124 2025 HOH HOH . D 4 HOH A 25 2125 2026 HOH HOH . D 4 HOH A 26 2126 2027 HOH HOH . D 4 HOH A 27 2127 2028 HOH HOH . D 4 HOH A 28 2128 2029 HOH HOH . D 4 HOH A 29 2129 2030 HOH HOH . D 4 HOH A 30 2130 2031 HOH HOH . D 4 HOH A 31 2131 2032 HOH HOH . D 4 HOH A 32 2132 2033 HOH HOH . D 4 HOH A 33 2133 2034 HOH HOH . D 4 HOH A 34 2134 2035 HOH HOH . D 4 HOH A 35 2135 2036 HOH HOH . D 4 HOH A 36 2136 2037 HOH HOH . D 4 HOH A 37 2137 2038 HOH HOH . D 4 HOH A 38 2138 2039 HOH HOH . D 4 HOH A 39 2139 2040 HOH HOH . D 4 HOH A 40 2140 2041 HOH HOH . D 4 HOH A 41 2141 2042 HOH HOH . D 4 HOH A 42 2142 2043 HOH HOH . D 4 HOH A 43 2143 2044 HOH HOH . D 4 HOH A 44 2144 2045 HOH HOH . D 4 HOH A 45 2145 2046 HOH HOH . D 4 HOH A 46 2146 2047 HOH HOH . D 4 HOH A 47 2147 2048 HOH HOH . D 4 HOH A 48 2148 2049 HOH HOH . D 4 HOH A 49 2149 2050 HOH HOH . D 4 HOH A 50 2150 2051 HOH HOH . D 4 HOH A 51 2151 2052 HOH HOH . D 4 HOH A 52 2152 2053 HOH HOH . D 4 HOH A 53 2153 2054 HOH HOH . D 4 HOH A 54 2154 2055 HOH HOH . D 4 HOH A 55 2155 2056 HOH HOH . D 4 HOH A 56 2156 2057 HOH HOH . D 4 HOH A 57 2157 2058 HOH HOH . D 4 HOH A 58 2158 2059 HOH HOH . D 4 HOH A 59 2159 2060 HOH HOH . D 4 HOH A 60 2160 2061 HOH HOH . D 4 HOH A 61 2161 2062 HOH HOH . D 4 HOH A 62 2162 2063 HOH HOH . D 4 HOH A 63 2163 2064 HOH HOH . D 4 HOH A 64 2164 2065 HOH HOH . D 4 HOH A 65 2165 2066 HOH HOH . D 4 HOH A 66 2166 2067 HOH HOH . D 4 HOH A 67 2167 2068 HOH HOH . D 4 HOH A 68 2168 2069 HOH HOH . D 4 HOH A 69 2169 2070 HOH HOH . D 4 HOH A 70 2170 2071 HOH HOH . D 4 HOH A 71 2171 2072 HOH HOH . D 4 HOH A 72 2172 2073 HOH HOH . D 4 HOH A 73 2173 2074 HOH HOH . D 4 HOH A 74 2174 2075 HOH HOH . D 4 HOH A 75 2175 2076 HOH HOH . D 4 HOH A 76 2176 2077 HOH HOH . D 4 HOH A 77 2177 2078 HOH HOH . D 4 HOH A 78 2178 2079 HOH HOH . D 4 HOH A 79 2179 2080 HOH HOH . D 4 HOH A 80 2180 2081 HOH HOH . D 4 HOH A 81 2181 2082 HOH HOH . D 4 HOH A 82 2182 2083 HOH HOH . D 4 HOH A 83 2183 2084 HOH HOH . D 4 HOH A 84 2184 2085 HOH HOH . D 4 HOH A 85 2185 2086 HOH HOH . D 4 HOH A 86 2186 2087 HOH HOH . D 4 HOH A 87 2187 2088 HOH HOH . D 4 HOH A 88 2188 2089 HOH HOH . D 4 HOH A 89 2189 2090 HOH HOH . D 4 HOH A 90 2190 2091 HOH HOH . D 4 HOH A 91 2191 2092 HOH HOH . D 4 HOH A 92 2192 2093 HOH HOH . D 4 HOH A 93 2193 2094 HOH HOH . D 4 HOH A 94 2194 2095 HOH HOH . D 4 HOH A 95 2195 2096 HOH HOH . D 4 HOH A 96 2196 2097 HOH HOH . D 4 HOH A 97 2197 2098 HOH HOH . D 4 HOH A 98 2198 2099 HOH HOH . D 4 HOH A 99 2199 2100 HOH HOH . D 4 HOH A 100 2200 2101 HOH HOH . D 4 HOH A 101 2201 2102 HOH HOH . D 4 HOH A 102 2202 2103 HOH HOH . D 4 HOH A 103 2203 2104 HOH HOH . D 4 HOH A 104 2204 2105 HOH HOH . D 4 HOH A 105 2205 2106 HOH HOH . D 4 HOH A 106 2206 2107 HOH HOH . D 4 HOH A 107 2207 2108 HOH HOH . D 4 HOH A 108 2208 2109 HOH HOH . D 4 HOH A 109 2209 2110 HOH HOH . D 4 HOH A 110 2210 2111 HOH HOH . D 4 HOH A 111 2211 2112 HOH HOH . D 4 HOH A 112 2212 2113 HOH HOH . D 4 HOH A 113 2213 2114 HOH HOH . D 4 HOH A 114 2214 2115 HOH HOH . D 4 HOH A 115 2215 2116 HOH HOH . D 4 HOH A 116 2216 2117 HOH HOH . D 4 HOH A 117 2217 2118 HOH HOH . D 4 HOH A 118 2218 2119 HOH HOH . D 4 HOH A 119 2219 2120 HOH HOH . D 4 HOH A 120 2220 2121 HOH HOH . D 4 HOH A 121 2221 2122 HOH HOH . D 4 HOH A 122 2222 2123 HOH HOH . D 4 HOH A 123 2223 2124 HOH HOH . D 4 HOH A 124 2224 2125 HOH HOH . D 4 HOH A 125 2225 2126 HOH HOH . D 4 HOH A 126 2226 2127 HOH HOH . D 4 HOH A 127 2227 2128 HOH HOH . D 4 HOH A 128 2228 2129 HOH HOH . D 4 HOH A 129 2229 2130 HOH HOH . D 4 HOH A 130 2230 2131 HOH HOH . D 4 HOH A 131 2231 2132 HOH HOH . D 4 HOH A 132 2232 2133 HOH HOH . D 4 HOH A 133 2233 2134 HOH HOH . D 4 HOH A 134 2234 2135 HOH HOH . D 4 HOH A 135 2235 2136 HOH HOH . D 4 HOH A 136 2236 2137 HOH HOH . D 4 HOH A 137 2237 2138 HOH HOH . D 4 HOH A 138 2238 2139 HOH HOH . D 4 HOH A 139 2239 2140 HOH HOH . D 4 HOH A 140 2240 2141 HOH HOH . D 4 HOH A 141 2241 2142 HOH HOH . D 4 HOH A 142 2242 2143 HOH HOH . D 4 HOH A 143 2243 2144 HOH HOH . D 4 HOH A 144 2244 2145 HOH HOH . D 4 HOH A 145 2245 2146 HOH HOH . D 4 HOH A 146 2246 2147 HOH HOH . D 4 HOH A 147 2247 2148 HOH HOH . D 4 HOH A 148 2248 2149 HOH HOH . D 4 HOH A 149 2249 2150 HOH HOH . D 4 HOH A 150 2250 2151 HOH HOH . D 4 HOH A 151 2251 2152 HOH HOH . D 4 HOH A 152 2252 2153 HOH HOH . D 4 HOH A 153 2253 2154 HOH HOH . D 4 HOH A 154 2254 2155 HOH HOH . D 4 HOH A 155 2255 2156 HOH HOH . D 4 HOH A 156 2256 2157 HOH HOH . D 4 HOH A 157 2257 2158 HOH HOH . D 4 HOH A 158 2258 2159 HOH HOH . D 4 HOH A 159 2259 2160 HOH HOH . D 4 HOH A 160 2260 2161 HOH HOH . D 4 HOH A 161 2261 2162 HOH HOH . D 4 HOH A 162 2262 2163 HOH HOH . D 4 HOH A 163 2263 2164 HOH HOH . D 4 HOH A 164 2264 2165 HOH HOH . D 4 HOH A 165 2265 2166 HOH HOH . D 4 HOH A 166 2266 2167 HOH HOH . D 4 HOH A 167 2267 2168 HOH HOH . D 4 HOH A 168 2268 2169 HOH HOH . D 4 HOH A 169 2269 2170 HOH HOH . D 4 HOH A 170 2270 2171 HOH HOH . D 4 HOH A 171 2271 2172 HOH HOH . D 4 HOH A 172 2272 2173 HOH HOH . D 4 HOH A 173 2273 2174 HOH HOH . D 4 HOH A 174 2274 2177 HOH HOH . D 4 HOH A 175 2275 2178 HOH HOH . D 4 HOH A 176 2276 2179 HOH HOH . D 4 HOH A 177 2277 2180 HOH HOH . D 4 HOH A 178 2278 2181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT TXA . . . C 3 0.158 22.18 15.273 1 15.23 ? OXT TXA 2002 A 1 HETATM 2 C CX TXA . . . C 3 1.381 22.38 15.056 1 14.3 ? CX TXA 2002 A 1 HETATM 3 O OX TXA . . . C 3 1.747 22.879 13.98 1 14.5 ? OX TXA 2002 A 1 HETATM 4 C CAX TXA . . . C 3 2.405 21.95 16.106 1 15.46 ? CAX TXA 2002 A 1 HETATM 5 C CBX TXA . . . C 3 3.321 20.951 15.323 1 14.04 ? CBX TXA 2002 A 1 HETATM 6 C CGX TXA . . . C 3 4.233 20.163 16.264 1 13.8 ? CGX TXA 2002 A 1 HETATM 7 O OGX TXA . . . C 3 2.547 19.947 14.655 1 18.81 ? OGX TXA 2002 A 1 HETATM 8 N NX TXA . . . C 3 1.777 21.396 17.381 1 14.61 ? NX TXA 2002 A 1 HETATM 9 C CCA TXA . . . C 3 1.44 22.274 18.331 1 20 ? CCA TXA 2002 A 1 HETATM 10 O OP2 TXA . . . C 3 0.622 21.755 19.156 1 20 ? OP2 TXA 2002 A 1 HETATM 11 O OCA TXA . . . C 3 1.783 23.339 18.174 1 19.05 ? OCA TXA 2002 A 1 HETATM 12 P P TXA . . . C 3 0.25 22.586 20.27 1 19.88 ? P TXA 2002 A 1 HETATM 13 O OP3 TXA . . . C 3 1.287 22.882 21.433 1 17.84 ? OP3 TXA 2002 A 1 HETATM 14 O OP1 TXA . . . C 3 -0.614 23.924 19.815 1 19.29 ? OP1 TXA 2002 A 1 HETATM 15 O O5' TXA . . . C 3 -0.821 21.562 21.138 1 21.01 ? O5' TXA 2002 A 1 HETATM 16 C C5' TXA . . . C 3 -1.967 20.937 20.557 1 21.25 ? C5' TXA 2002 A 1 HETATM 17 C C4' TXA . . . C 3 -3.158 21.876 20.522 1 22.24 ? C4' TXA 2002 A 1 HETATM 18 C C3' TXA . . . C 3 -3.871 21.943 21.873 1 18.81 ? C3' TXA 2002 A 1 HETATM 19 O O3' TXA . . . C 3 -3.399 23.004 22.707 1 17.52 ? O3' TXA 2002 A 1 HETATM 20 C C2' TXA . . . C 3 -5.276 22.288 21.438 1 18.14 ? C2' TXA 2002 A 1 HETATM 21 O O2' TXA . . . C 3 -5.338 23.714 21.298 1 19.43 ? O2' TXA 2002 A 1 HETATM 22 C C1' TXA . . . C 3 -5.41 21.61 20.085 1 18.22 ? C1' TXA 2002 A 1 HETATM 23 O O4' TXA . . . C 3 -4.118 21.292 19.633 1 20.41 ? O4' TXA 2002 A 1 HETATM 24 N N9 TXA . . . C 3 -6.148 20.37 20.217 1 19.16 ? N9 TXA 2002 A 1 HETATM 25 C C8 TXA . . . C 3 -5.644 19.093 20.362 1 17.85 ? C8 TXA 2002 A 1 HETATM 26 N N7 TXA . . . C 3 -6.629 18.199 20.475 1 16.27 ? N7 TXA 2002 A 1 HETATM 27 C C5 TXA . . . C 3 -7.805 18.864 20.371 1 19.79 ? C5 TXA 2002 A 1 HETATM 28 C C6 TXA . . . C 3 -9.237 18.479 20.423 1 21.01 ? C6 TXA 2002 A 1 HETATM 29 N N6 TXA . . . C 3 -9.608 17.156 20.514 1 17.56 ? N6 TXA 2002 A 1 HETATM 30 N N1 TXA . . . C 3 -10.131 19.477 20.348 1 22.08 ? N1 TXA 2002 A 1 HETATM 31 C C2 TXA . . . C 3 -9.787 20.764 20.172 1 23.9 ? C2 TXA 2002 A 1 HETATM 32 N N3 TXA . . . C 3 -8.485 21.188 20.116 1 24.19 ? N3 TXA 2002 A 1 HETATM 33 C C4 TXA . . . C 3 -7.478 20.298 20.211 1 20.09 ? C4 TXA 2002 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #