data_4E2E # _model_server_result.job_id 06UOXlST1I4DyWINPRfLHA _model_server_result.datetime_utc '2025-07-03 13:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4E2E # _exptl.entry_id 4E2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E2E _cell.length_a 60.988 _cell.length_b 78.515 _cell.length_c 122.131 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2,3,4 A,B,C 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 60.988 78.515 0 3 'crystal symmetry operation' 3_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 60.988 0 366.393 4 'crystal symmetry operation' 4_568 x,-y+1,-z+3 1 0 0 0 -1 0 0 0 -1 0 78.515 366.393 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N VAL 3 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale2 A C ASP 23 A ASP 22 1_555 A N MSE 24 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 24 A MSE 23 1_555 A N ALA 25 A ALA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale4 A C ALA 27 A ALA 26 1_555 A N MSE 28 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale5 A C MSE 28 A MSE 27 1_555 A N LYS 29 A LYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 A C GLU 81 A GLU 80 1_555 A N MSE 82 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale7 A C MSE 82 A MSE 81 1_555 A N VAL 83 A VAL 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale8 A C LYS 126 A LYS 125 1_555 A N MSE 127 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale9 A C MSE 127 A MSE 126 1_555 A N LYS 128 A LYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C HIS 165 A HIS 164 1_555 A N MSE 166 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 A C MSE 166 A MSE 165 1_555 A N GLN 167 A GLN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale12 A C ILE 223 A ILE 222 1_555 A N MSE 224 A MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale13 A C MSE 224 A MSE 223 1_555 A N GLN 225 A GLN 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4E2E _atom_sites.fract_transf_matrix[1][1] 0.016397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 248 EDO EDO . C 3 HOH A 1 401 249 HOH HOH . C 3 HOH A 2 402 250 HOH HOH . C 3 HOH A 3 403 251 HOH HOH . C 3 HOH A 4 404 252 HOH HOH . C 3 HOH A 5 405 253 HOH HOH . C 3 HOH A 6 406 254 HOH HOH . C 3 HOH A 7 407 255 HOH HOH . C 3 HOH A 8 408 256 HOH HOH . C 3 HOH A 9 409 257 HOH HOH . C 3 HOH A 10 410 259 HOH HOH . C 3 HOH A 11 411 260 HOH HOH . C 3 HOH A 12 412 261 HOH HOH . C 3 HOH A 13 413 262 HOH HOH . C 3 HOH A 14 414 263 HOH HOH . C 3 HOH A 15 415 264 HOH HOH . C 3 HOH A 16 416 265 HOH HOH . C 3 HOH A 17 417 266 HOH HOH . C 3 HOH A 18 418 267 HOH HOH . C 3 HOH A 19 419 268 HOH HOH . C 3 HOH A 20 420 269 HOH HOH . C 3 HOH A 21 421 270 HOH HOH . C 3 HOH A 22 422 271 HOH HOH . C 3 HOH A 23 423 272 HOH HOH . C 3 HOH A 24 424 273 HOH HOH . C 3 HOH A 25 425 274 HOH HOH . C 3 HOH A 26 426 275 HOH HOH . C 3 HOH A 27 427 276 HOH HOH . C 3 HOH A 28 428 277 HOH HOH . C 3 HOH A 29 429 278 HOH HOH . C 3 HOH A 30 430 279 HOH HOH . C 3 HOH A 31 431 280 HOH HOH . C 3 HOH A 32 432 281 HOH HOH . C 3 HOH A 33 433 282 HOH HOH . C 3 HOH A 34 434 283 HOH HOH . C 3 HOH A 35 435 284 HOH HOH . C 3 HOH A 36 436 285 HOH HOH . C 3 HOH A 37 437 286 HOH HOH . C 3 HOH A 38 438 287 HOH HOH . C 3 HOH A 39 439 288 HOH HOH . C 3 HOH A 40 440 289 HOH HOH . C 3 HOH A 41 441 290 HOH HOH . C 3 HOH A 42 442 291 HOH HOH . C 3 HOH A 43 443 292 HOH HOH . C 3 HOH A 44 444 293 HOH HOH . C 3 HOH A 45 445 294 HOH HOH . C 3 HOH A 46 446 295 HOH HOH . C 3 HOH A 47 447 296 HOH HOH . C 3 HOH A 48 448 297 HOH HOH . C 3 HOH A 49 449 298 HOH HOH . C 3 HOH A 50 450 299 HOH HOH . C 3 HOH A 51 451 300 HOH HOH . C 3 HOH A 52 452 301 HOH HOH . C 3 HOH A 53 453 302 HOH HOH . C 3 HOH A 54 454 303 HOH HOH . C 3 HOH A 55 455 304 HOH HOH . C 3 HOH A 56 456 305 HOH HOH . C 3 HOH A 57 457 306 HOH HOH . C 3 HOH A 58 458 307 HOH HOH . C 3 HOH A 59 459 308 HOH HOH . C 3 HOH A 60 460 309 HOH HOH . C 3 HOH A 61 461 310 HOH HOH . C 3 HOH A 62 462 311 HOH HOH . C 3 HOH A 63 463 312 HOH HOH . C 3 HOH A 64 464 313 HOH HOH . C 3 HOH A 65 465 314 HOH HOH . C 3 HOH A 66 466 315 HOH HOH . C 3 HOH A 67 467 316 HOH HOH . C 3 HOH A 68 468 317 HOH HOH . C 3 HOH A 69 469 318 HOH HOH . C 3 HOH A 70 470 319 HOH HOH . C 3 HOH A 71 471 320 HOH HOH . C 3 HOH A 72 472 321 HOH HOH . C 3 HOH A 73 473 322 HOH HOH . C 3 HOH A 74 474 323 HOH HOH . C 3 HOH A 75 475 324 HOH HOH . C 3 HOH A 76 476 325 HOH HOH . C 3 HOH A 77 477 326 HOH HOH . C 3 HOH A 78 478 327 HOH HOH . C 3 HOH A 79 479 328 HOH HOH . C 3 HOH A 80 480 329 HOH HOH . C 3 HOH A 81 481 330 HOH HOH . C 3 HOH A 82 482 331 HOH HOH . C 3 HOH A 83 483 332 HOH HOH . C 3 HOH A 84 484 333 HOH HOH . C 3 HOH A 85 485 334 HOH HOH . C 3 HOH A 86 486 335 HOH HOH . C 3 HOH A 87 487 336 HOH HOH . C 3 HOH A 88 488 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 19.936 48.694 167.798 1 72.52 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . B 2 18.644 49.333 167.909 1 73.4 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . B 2 20.004 47.356 168.538 1 70.31 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . B 2 19.622 46.253 167.69 1 74.43 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #