data_4E2J # _model_server_result.job_id HWJM6d2CpIhBtjCPISwFRw _model_server_result.datetime_utc '2024-10-13 04:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4E2J # _exptl.entry_id 4E2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4E2J _cell.length_a 104.356 _cell.length_b 104.356 _cell.length_c 143.925 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J,L 1 1 B,D,G,H,I,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 4E2J _atom_sites.fract_transf_matrix[1][1] 0.009583 _atom_sites.fract_transf_matrix[1][2] 0.005533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 301 1 GOL GOL . F 4 MOF A 1 302 5254 MOF MOF . G 4 MOF B 1 301 5254 MOF MOF . H 5 FMT B 1 302 1 FMT FMT . I 3 GOL B 1 303 3 GOL GOL . J 6 HOH A 1 401 1 HOH HOH . J 6 HOH A 2 402 2 HOH HOH . J 6 HOH A 3 403 9 HOH HOH . J 6 HOH A 4 404 13 HOH HOH . J 6 HOH A 5 405 14 HOH HOH . J 6 HOH A 6 406 15 HOH HOH . J 6 HOH A 7 407 16 HOH HOH . J 6 HOH A 8 408 17 HOH HOH . J 6 HOH A 9 409 21 HOH HOH . J 6 HOH A 10 410 25 HOH HOH . J 6 HOH A 11 411 26 HOH HOH . J 6 HOH A 12 412 28 HOH HOH . J 6 HOH A 13 413 30 HOH HOH . J 6 HOH A 14 414 31 HOH HOH . J 6 HOH A 15 415 32 HOH HOH . J 6 HOH A 16 416 33 HOH HOH . J 6 HOH A 17 417 36 HOH HOH . J 6 HOH A 18 418 37 HOH HOH . J 6 HOH A 19 419 39 HOH HOH . J 6 HOH A 20 420 41 HOH HOH . J 6 HOH A 21 421 45 HOH HOH . J 6 HOH A 22 422 48 HOH HOH . J 6 HOH A 23 423 53 HOH HOH . J 6 HOH A 24 424 62 HOH HOH . J 6 HOH A 25 425 65 HOH HOH . J 6 HOH A 26 426 67 HOH HOH . J 6 HOH A 27 427 69 HOH HOH . J 6 HOH A 28 428 74 HOH HOH . J 6 HOH A 29 429 75 HOH HOH . J 6 HOH A 30 430 76 HOH HOH . J 6 HOH A 31 431 79 HOH HOH . J 6 HOH A 32 432 80 HOH HOH . J 6 HOH A 33 433 81 HOH HOH . J 6 HOH A 34 434 84 HOH HOH . J 6 HOH A 35 435 85 HOH HOH . J 6 HOH A 36 436 87 HOH HOH . J 6 HOH A 37 437 91 HOH HOH . J 6 HOH A 38 438 94 HOH HOH . J 6 HOH A 39 439 99 HOH HOH . J 6 HOH A 40 440 102 HOH HOH . J 6 HOH A 41 441 105 HOH HOH . J 6 HOH A 42 442 106 HOH HOH . J 6 HOH A 43 443 108 HOH HOH . J 6 HOH A 44 444 110 HOH HOH . J 6 HOH A 45 445 111 HOH HOH . J 6 HOH A 46 446 113 HOH HOH . J 6 HOH A 47 447 116 HOH HOH . J 6 HOH A 48 448 117 HOH HOH . J 6 HOH A 49 449 118 HOH HOH . J 6 HOH A 50 450 119 HOH HOH . J 6 HOH A 51 451 120 HOH HOH . J 6 HOH A 52 452 122 HOH HOH . J 6 HOH A 53 453 123 HOH HOH . J 6 HOH A 54 454 124 HOH HOH . J 6 HOH A 55 455 125 HOH HOH . J 6 HOH A 56 456 126 HOH HOH . J 6 HOH A 57 457 127 HOH HOH . J 6 HOH A 58 458 128 HOH HOH . J 6 HOH A 59 459 130 HOH HOH . J 6 HOH A 60 460 132 HOH HOH . J 6 HOH A 61 461 133 HOH HOH . J 6 HOH A 62 462 134 HOH HOH . J 6 HOH A 63 463 135 HOH HOH . J 6 HOH A 64 464 140 HOH HOH . J 6 HOH A 65 465 142 HOH HOH . J 6 HOH A 66 466 144 HOH HOH . J 6 HOH A 67 467 145 HOH HOH . J 6 HOH A 68 468 147 HOH HOH . J 6 HOH A 69 469 149 HOH HOH . J 6 HOH A 70 470 157 HOH HOH . J 6 HOH A 71 471 160 HOH HOH . K 6 HOH B 1 401 3 HOH HOH . K 6 HOH B 2 402 4 HOH HOH . K 6 HOH B 3 403 5 HOH HOH . K 6 HOH B 4 404 6 HOH HOH . K 6 HOH B 5 405 7 HOH HOH . K 6 HOH B 6 406 8 HOH HOH . K 6 HOH B 7 407 10 HOH HOH . K 6 HOH B 8 408 11 HOH HOH . K 6 HOH B 9 409 12 HOH HOH . K 6 HOH B 10 410 18 HOH HOH . K 6 HOH B 11 411 19 HOH HOH . K 6 HOH B 12 412 20 HOH HOH . K 6 HOH B 13 413 22 HOH HOH . K 6 HOH B 14 414 23 HOH HOH . K 6 HOH B 15 415 24 HOH HOH . K 6 HOH B 16 416 27 HOH HOH . K 6 HOH B 17 417 29 HOH HOH . K 6 HOH B 18 418 34 HOH HOH . K 6 HOH B 19 419 35 HOH HOH . K 6 HOH B 20 420 38 HOH HOH . K 6 HOH B 21 421 40 HOH HOH . K 6 HOH B 22 422 42 HOH HOH . K 6 HOH B 23 423 43 HOH HOH . K 6 HOH B 24 424 44 HOH HOH . K 6 HOH B 25 425 46 HOH HOH . K 6 HOH B 26 426 49 HOH HOH . K 6 HOH B 27 427 50 HOH HOH . K 6 HOH B 28 428 51 HOH HOH . K 6 HOH B 29 429 54 HOH HOH . K 6 HOH B 30 430 56 HOH HOH . K 6 HOH B 31 431 57 HOH HOH . K 6 HOH B 32 432 58 HOH HOH . K 6 HOH B 33 433 59 HOH HOH . K 6 HOH B 34 434 60 HOH HOH . K 6 HOH B 35 435 61 HOH HOH . K 6 HOH B 36 436 63 HOH HOH . K 6 HOH B 37 437 64 HOH HOH . K 6 HOH B 38 438 66 HOH HOH . K 6 HOH B 39 439 68 HOH HOH . K 6 HOH B 40 440 70 HOH HOH . K 6 HOH B 41 441 71 HOH HOH . K 6 HOH B 42 442 72 HOH HOH . K 6 HOH B 43 443 73 HOH HOH . K 6 HOH B 44 444 77 HOH HOH . K 6 HOH B 45 445 78 HOH HOH . K 6 HOH B 46 446 82 HOH HOH . K 6 HOH B 47 447 83 HOH HOH . K 6 HOH B 48 448 86 HOH HOH . K 6 HOH B 49 449 88 HOH HOH . K 6 HOH B 50 450 89 HOH HOH . K 6 HOH B 51 451 92 HOH HOH . K 6 HOH B 52 452 93 HOH HOH . K 6 HOH B 53 453 97 HOH HOH . K 6 HOH B 54 454 100 HOH HOH . K 6 HOH B 55 455 101 HOH HOH . K 6 HOH B 56 456 103 HOH HOH . K 6 HOH B 57 457 104 HOH HOH . K 6 HOH B 58 458 107 HOH HOH . K 6 HOH B 59 459 109 HOH HOH . K 6 HOH B 60 460 112 HOH HOH . K 6 HOH B 61 461 114 HOH HOH . K 6 HOH B 62 462 115 HOH HOH . K 6 HOH B 63 463 129 HOH HOH . K 6 HOH B 64 464 131 HOH HOH . K 6 HOH B 65 465 136 HOH HOH . K 6 HOH B 66 466 137 HOH HOH . K 6 HOH B 67 467 138 HOH HOH . K 6 HOH B 68 468 141 HOH HOH . K 6 HOH B 69 469 146 HOH HOH . K 6 HOH B 70 470 148 HOH HOH . K 6 HOH B 71 471 150 HOH HOH . K 6 HOH B 72 472 151 HOH HOH . K 6 HOH B 73 473 152 HOH HOH . K 6 HOH B 74 474 153 HOH HOH . K 6 HOH B 75 475 154 HOH HOH . K 6 HOH B 76 476 158 HOH HOH . L 6 HOH C 1 801 55 HOH HOH . L 6 HOH C 2 802 90 HOH HOH . L 6 HOH C 3 803 156 HOH HOH . M 6 HOH E 1 801 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -32.983 21.738 1.866 1 53.87 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . E 3 -34.372 21.77 2.232 1 50.26 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . E 3 -32.234 20.706 2.71 1 52.77 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . E 3 -31.404 21.386 3.652 1 52.2 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . E 3 -31.379 19.787 1.833 1 54.04 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . E 3 -30.045 20.275 1.626 1 53.54 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #