data_4E2J
#
_model_server_result.job_id            T_cTIdCToC9cNo2xZ8ol3A 
_model_server_result.datetime_utc      '2024-11-22 07:49:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4e2j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":303}' 
#
_entry.id    4E2J 
#
_exptl.entry_id    4E2J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4E2J 
_cell.length_a            104.356 
_cell.length_b            104.356 
_cell.length_c            143.925 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4E2J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,J,L 1 1 
B,D,G,H,I,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 133 n n 
C1 C2 GOL sing 134 n n 
C1 H11 GOL sing 135 n n 
C1 H12 GOL sing 136 n n 
O1 HO1 GOL sing 137 n n 
C2 O2 GOL sing 138 n n 
C2 C3 GOL sing 139 n n 
C2 H2 GOL sing 140 n n 
O2 HO2 GOL sing 141 n n 
C3 O3 GOL sing 142 n n 
C3 H31 GOL sing 143 n n 
C3 H32 GOL sing 144 n n 
O3 HO3 GOL sing 145 n n 
#
_atom_sites.entry_id                     4E2J 
_atom_sites.fract_transf_matrix[1][1]    0.009583 
_atom_sites.fract_transf_matrix[1][2]    0.005533 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011065 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 301 1 GOL GOL . 
F 4 MOF A 1 302 5254 MOF MOF . 
G 4 MOF B 1 301 5254 MOF MOF . 
H 5 FMT B 1 302 1 FMT FMT . 
I 3 GOL B 1 303 3 GOL GOL . 
J 6 HOH A 1 401 1 HOH HOH . 
J 6 HOH A 2 402 2 HOH HOH . 
J 6 HOH A 3 403 9 HOH HOH . 
J 6 HOH A 4 404 13 HOH HOH . 
J 6 HOH A 5 405 14 HOH HOH . 
J 6 HOH A 6 406 15 HOH HOH . 
J 6 HOH A 7 407 16 HOH HOH . 
J 6 HOH A 8 408 17 HOH HOH . 
J 6 HOH A 9 409 21 HOH HOH . 
J 6 HOH A 10 410 25 HOH HOH . 
J 6 HOH A 11 411 26 HOH HOH . 
J 6 HOH A 12 412 28 HOH HOH . 
J 6 HOH A 13 413 30 HOH HOH . 
J 6 HOH A 14 414 31 HOH HOH . 
J 6 HOH A 15 415 32 HOH HOH . 
J 6 HOH A 16 416 33 HOH HOH . 
J 6 HOH A 17 417 36 HOH HOH . 
J 6 HOH A 18 418 37 HOH HOH . 
J 6 HOH A 19 419 39 HOH HOH . 
J 6 HOH A 20 420 41 HOH HOH . 
J 6 HOH A 21 421 45 HOH HOH . 
J 6 HOH A 22 422 48 HOH HOH . 
J 6 HOH A 23 423 53 HOH HOH . 
J 6 HOH A 24 424 62 HOH HOH . 
J 6 HOH A 25 425 65 HOH HOH . 
J 6 HOH A 26 426 67 HOH HOH . 
J 6 HOH A 27 427 69 HOH HOH . 
J 6 HOH A 28 428 74 HOH HOH . 
J 6 HOH A 29 429 75 HOH HOH . 
J 6 HOH A 30 430 76 HOH HOH . 
J 6 HOH A 31 431 79 HOH HOH . 
J 6 HOH A 32 432 80 HOH HOH . 
J 6 HOH A 33 433 81 HOH HOH . 
J 6 HOH A 34 434 84 HOH HOH . 
J 6 HOH A 35 435 85 HOH HOH . 
J 6 HOH A 36 436 87 HOH HOH . 
J 6 HOH A 37 437 91 HOH HOH . 
J 6 HOH A 38 438 94 HOH HOH . 
J 6 HOH A 39 439 99 HOH HOH . 
J 6 HOH A 40 440 102 HOH HOH . 
J 6 HOH A 41 441 105 HOH HOH . 
J 6 HOH A 42 442 106 HOH HOH . 
J 6 HOH A 43 443 108 HOH HOH . 
J 6 HOH A 44 444 110 HOH HOH . 
J 6 HOH A 45 445 111 HOH HOH . 
J 6 HOH A 46 446 113 HOH HOH . 
J 6 HOH A 47 447 116 HOH HOH . 
J 6 HOH A 48 448 117 HOH HOH . 
J 6 HOH A 49 449 118 HOH HOH . 
J 6 HOH A 50 450 119 HOH HOH . 
J 6 HOH A 51 451 120 HOH HOH . 
J 6 HOH A 52 452 122 HOH HOH . 
J 6 HOH A 53 453 123 HOH HOH . 
J 6 HOH A 54 454 124 HOH HOH . 
J 6 HOH A 55 455 125 HOH HOH . 
J 6 HOH A 56 456 126 HOH HOH . 
J 6 HOH A 57 457 127 HOH HOH . 
J 6 HOH A 58 458 128 HOH HOH . 
J 6 HOH A 59 459 130 HOH HOH . 
J 6 HOH A 60 460 132 HOH HOH . 
J 6 HOH A 61 461 133 HOH HOH . 
J 6 HOH A 62 462 134 HOH HOH . 
J 6 HOH A 63 463 135 HOH HOH . 
J 6 HOH A 64 464 140 HOH HOH . 
J 6 HOH A 65 465 142 HOH HOH . 
J 6 HOH A 66 466 144 HOH HOH . 
J 6 HOH A 67 467 145 HOH HOH . 
J 6 HOH A 68 468 147 HOH HOH . 
J 6 HOH A 69 469 149 HOH HOH . 
J 6 HOH A 70 470 157 HOH HOH . 
J 6 HOH A 71 471 160 HOH HOH . 
K 6 HOH B 1 401 3 HOH HOH . 
K 6 HOH B 2 402 4 HOH HOH . 
K 6 HOH B 3 403 5 HOH HOH . 
K 6 HOH B 4 404 6 HOH HOH . 
K 6 HOH B 5 405 7 HOH HOH . 
K 6 HOH B 6 406 8 HOH HOH . 
K 6 HOH B 7 407 10 HOH HOH . 
K 6 HOH B 8 408 11 HOH HOH . 
K 6 HOH B 9 409 12 HOH HOH . 
K 6 HOH B 10 410 18 HOH HOH . 
K 6 HOH B 11 411 19 HOH HOH . 
K 6 HOH B 12 412 20 HOH HOH . 
K 6 HOH B 13 413 22 HOH HOH . 
K 6 HOH B 14 414 23 HOH HOH . 
K 6 HOH B 15 415 24 HOH HOH . 
K 6 HOH B 16 416 27 HOH HOH . 
K 6 HOH B 17 417 29 HOH HOH . 
K 6 HOH B 18 418 34 HOH HOH . 
K 6 HOH B 19 419 35 HOH HOH . 
K 6 HOH B 20 420 38 HOH HOH . 
K 6 HOH B 21 421 40 HOH HOH . 
K 6 HOH B 22 422 42 HOH HOH . 
K 6 HOH B 23 423 43 HOH HOH . 
K 6 HOH B 24 424 44 HOH HOH . 
K 6 HOH B 25 425 46 HOH HOH . 
K 6 HOH B 26 426 49 HOH HOH . 
K 6 HOH B 27 427 50 HOH HOH . 
K 6 HOH B 28 428 51 HOH HOH . 
K 6 HOH B 29 429 54 HOH HOH . 
K 6 HOH B 30 430 56 HOH HOH . 
K 6 HOH B 31 431 57 HOH HOH . 
K 6 HOH B 32 432 58 HOH HOH . 
K 6 HOH B 33 433 59 HOH HOH . 
K 6 HOH B 34 434 60 HOH HOH . 
K 6 HOH B 35 435 61 HOH HOH . 
K 6 HOH B 36 436 63 HOH HOH . 
K 6 HOH B 37 437 64 HOH HOH . 
K 6 HOH B 38 438 66 HOH HOH . 
K 6 HOH B 39 439 68 HOH HOH . 
K 6 HOH B 40 440 70 HOH HOH . 
K 6 HOH B 41 441 71 HOH HOH . 
K 6 HOH B 42 442 72 HOH HOH . 
K 6 HOH B 43 443 73 HOH HOH . 
K 6 HOH B 44 444 77 HOH HOH . 
K 6 HOH B 45 445 78 HOH HOH . 
K 6 HOH B 46 446 82 HOH HOH . 
K 6 HOH B 47 447 83 HOH HOH . 
K 6 HOH B 48 448 86 HOH HOH . 
K 6 HOH B 49 449 88 HOH HOH . 
K 6 HOH B 50 450 89 HOH HOH . 
K 6 HOH B 51 451 92 HOH HOH . 
K 6 HOH B 52 452 93 HOH HOH . 
K 6 HOH B 53 453 97 HOH HOH . 
K 6 HOH B 54 454 100 HOH HOH . 
K 6 HOH B 55 455 101 HOH HOH . 
K 6 HOH B 56 456 103 HOH HOH . 
K 6 HOH B 57 457 104 HOH HOH . 
K 6 HOH B 58 458 107 HOH HOH . 
K 6 HOH B 59 459 109 HOH HOH . 
K 6 HOH B 60 460 112 HOH HOH . 
K 6 HOH B 61 461 114 HOH HOH . 
K 6 HOH B 62 462 115 HOH HOH . 
K 6 HOH B 63 463 129 HOH HOH . 
K 6 HOH B 64 464 131 HOH HOH . 
K 6 HOH B 65 465 136 HOH HOH . 
K 6 HOH B 66 466 137 HOH HOH . 
K 6 HOH B 67 467 138 HOH HOH . 
K 6 HOH B 68 468 141 HOH HOH . 
K 6 HOH B 69 469 146 HOH HOH . 
K 6 HOH B 70 470 148 HOH HOH . 
K 6 HOH B 71 471 150 HOH HOH . 
K 6 HOH B 72 472 151 HOH HOH . 
K 6 HOH B 73 473 152 HOH HOH . 
K 6 HOH B 74 474 153 HOH HOH . 
K 6 HOH B 75 475 154 HOH HOH . 
K 6 HOH B 76 476 158 HOH HOH . 
L 6 HOH C 1 801 55 HOH HOH . 
L 6 HOH C 2 802 90 HOH HOH . 
L 6 HOH C 3 803 156 HOH HOH . 
M 6 HOH E 1 801 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 -67.238 59.327 29.035 1 73.66 ? C1 GOL 303 B 1 
HETATM 2 O O1 GOL . . . I 3 -66.756 60.637 29.362 1 73.44 ? O1 GOL 303 B 1 
HETATM 3 C C2 GOL . . . I 3 -66.314 58.679 28.009 1 74.37 ? C2 GOL 303 B 1 
HETATM 4 O O2 GOL . . . I 3 -65.896 59.667 27.056 1 75.15 ? O2 GOL 303 B 1 
HETATM 5 C C3 GOL . . . I 3 -67.052 57.538 27.311 1 73.27 ? C3 GOL 303 B 1 
HETATM 6 O O3 GOL . . . I 3 -66.364 57.153 26.114 1 68.16 ? O3 GOL 303 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#