data_4E35 # _model_server_result.job_id '_Bt7RnS6dMk_vhkamd5PIA' _model_server_result.datetime_utc '2024-11-04 20:51:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 4E35 # _exptl.entry_id 4E35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E35 _cell.length_a 36.083 _cell.length_b 47.603 _cell.length_c 97.838 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J,L 1 1 B,D,G,H,I,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4E35 _atom_sites.fract_transf_matrix[1][1] 0.027714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 401 5 GOL GOL . F 3 GOL A 1 402 9 GOL GOL . G 3 GOL B 1 401 1 GOL GOL . H 3 GOL B 1 402 3 GOL GOL . I 3 GOL B 1 403 7 GOL GOL . J 4 HOH A 1 501 4 HOH HOH . J 4 HOH A 2 502 5 HOH HOH . J 4 HOH A 3 503 6 HOH HOH . J 4 HOH A 4 504 8 HOH HOH . J 4 HOH A 5 505 13 HOH HOH . J 4 HOH A 6 506 15 HOH HOH . J 4 HOH A 7 507 16 HOH HOH . J 4 HOH A 8 508 19 HOH HOH . J 4 HOH A 9 509 20 HOH HOH . J 4 HOH A 10 510 21 HOH HOH . J 4 HOH A 11 511 23 HOH HOH . J 4 HOH A 12 512 25 HOH HOH . J 4 HOH A 13 513 29 HOH HOH . J 4 HOH A 14 514 30 HOH HOH . J 4 HOH A 15 515 31 HOH HOH . J 4 HOH A 16 516 33 HOH HOH . J 4 HOH A 17 517 34 HOH HOH . J 4 HOH A 18 518 35 HOH HOH . J 4 HOH A 19 519 36 HOH HOH . J 4 HOH A 20 520 37 HOH HOH . J 4 HOH A 21 521 38 HOH HOH . J 4 HOH A 22 522 39 HOH HOH . J 4 HOH A 23 523 40 HOH HOH . J 4 HOH A 24 524 41 HOH HOH . J 4 HOH A 25 525 48 HOH HOH . J 4 HOH A 26 526 50 HOH HOH . J 4 HOH A 27 527 51 HOH HOH . J 4 HOH A 28 528 53 HOH HOH . J 4 HOH A 29 529 54 HOH HOH . J 4 HOH A 30 530 60 HOH HOH . J 4 HOH A 31 531 61 HOH HOH . J 4 HOH A 32 532 64 HOH HOH . J 4 HOH A 33 533 65 HOH HOH . J 4 HOH A 34 534 66 HOH HOH . J 4 HOH A 35 535 67 HOH HOH . J 4 HOH A 36 536 68 HOH HOH . J 4 HOH A 37 537 69 HOH HOH . J 4 HOH A 38 538 73 HOH HOH . J 4 HOH A 39 539 74 HOH HOH . J 4 HOH A 40 540 77 HOH HOH . J 4 HOH A 41 541 78 HOH HOH . J 4 HOH A 42 542 79 HOH HOH . J 4 HOH A 43 543 80 HOH HOH . J 4 HOH A 44 544 83 HOH HOH . J 4 HOH A 45 545 86 HOH HOH . J 4 HOH A 46 546 88 HOH HOH . J 4 HOH A 47 547 89 HOH HOH . J 4 HOH A 48 548 94 HOH HOH . J 4 HOH A 49 549 95 HOH HOH . J 4 HOH A 50 550 99 HOH HOH . J 4 HOH A 51 551 102 HOH HOH . J 4 HOH A 52 552 103 HOH HOH . J 4 HOH A 53 553 104 HOH HOH . J 4 HOH A 54 554 108 HOH HOH . J 4 HOH A 55 555 109 HOH HOH . J 4 HOH A 56 556 111 HOH HOH . J 4 HOH A 57 557 116 HOH HOH . J 4 HOH A 58 558 121 HOH HOH . J 4 HOH A 59 559 127 HOH HOH . J 4 HOH A 60 560 128 HOH HOH . J 4 HOH A 61 561 129 HOH HOH . J 4 HOH A 62 562 130 HOH HOH . J 4 HOH A 63 563 133 HOH HOH . J 4 HOH A 64 564 134 HOH HOH . J 4 HOH A 65 565 135 HOH HOH . J 4 HOH A 66 566 136 HOH HOH . J 4 HOH A 67 567 139 HOH HOH . J 4 HOH A 68 568 140 HOH HOH . J 4 HOH A 69 569 142 HOH HOH . J 4 HOH A 70 570 144 HOH HOH . J 4 HOH A 71 571 145 HOH HOH . J 4 HOH A 72 572 146 HOH HOH . J 4 HOH A 73 573 152 HOH HOH . J 4 HOH A 74 574 153 HOH HOH . J 4 HOH A 75 575 154 HOH HOH . J 4 HOH A 76 576 160 HOH HOH . J 4 HOH A 77 577 163 HOH HOH . J 4 HOH A 78 578 167 HOH HOH . J 4 HOH A 79 579 169 HOH HOH . J 4 HOH A 80 580 173 HOH HOH . J 4 HOH A 81 581 176 HOH HOH . J 4 HOH A 82 582 185 HOH HOH . J 4 HOH A 83 583 187 HOH HOH . K 4 HOH B 1 501 7 HOH HOH . K 4 HOH B 2 502 9 HOH HOH . K 4 HOH B 3 503 10 HOH HOH . K 4 HOH B 4 504 11 HOH HOH . K 4 HOH B 5 505 12 HOH HOH . K 4 HOH B 6 506 14 HOH HOH . K 4 HOH B 7 507 17 HOH HOH . K 4 HOH B 8 508 18 HOH HOH . K 4 HOH B 9 509 22 HOH HOH . K 4 HOH B 10 510 26 HOH HOH . K 4 HOH B 11 511 28 HOH HOH . K 4 HOH B 12 512 32 HOH HOH . K 4 HOH B 13 513 42 HOH HOH . K 4 HOH B 14 514 43 HOH HOH . K 4 HOH B 15 515 44 HOH HOH . K 4 HOH B 16 516 45 HOH HOH . K 4 HOH B 17 517 46 HOH HOH . K 4 HOH B 18 518 47 HOH HOH . K 4 HOH B 19 519 49 HOH HOH . K 4 HOH B 20 520 52 HOH HOH . K 4 HOH B 21 521 55 HOH HOH . K 4 HOH B 22 522 56 HOH HOH . K 4 HOH B 23 523 57 HOH HOH . K 4 HOH B 24 524 58 HOH HOH . K 4 HOH B 25 525 62 HOH HOH . K 4 HOH B 26 526 63 HOH HOH . K 4 HOH B 27 527 72 HOH HOH . K 4 HOH B 28 528 75 HOH HOH . K 4 HOH B 29 529 76 HOH HOH . K 4 HOH B 30 530 81 HOH HOH . K 4 HOH B 31 531 82 HOH HOH . K 4 HOH B 32 532 84 HOH HOH . K 4 HOH B 33 533 87 HOH HOH . K 4 HOH B 34 534 90 HOH HOH . K 4 HOH B 35 535 92 HOH HOH . K 4 HOH B 36 536 93 HOH HOH . K 4 HOH B 37 537 97 HOH HOH . K 4 HOH B 38 538 98 HOH HOH . K 4 HOH B 39 539 101 HOH HOH . K 4 HOH B 40 540 107 HOH HOH . K 4 HOH B 41 541 110 HOH HOH . K 4 HOH B 42 542 114 HOH HOH . K 4 HOH B 43 543 115 HOH HOH . K 4 HOH B 44 544 118 HOH HOH . K 4 HOH B 45 545 119 HOH HOH . K 4 HOH B 46 546 120 HOH HOH . K 4 HOH B 47 547 123 HOH HOH . K 4 HOH B 48 548 126 HOH HOH . K 4 HOH B 49 549 131 HOH HOH . K 4 HOH B 50 550 137 HOH HOH . K 4 HOH B 51 551 138 HOH HOH . K 4 HOH B 52 552 149 HOH HOH . K 4 HOH B 53 553 151 HOH HOH . K 4 HOH B 54 554 155 HOH HOH . K 4 HOH B 55 555 156 HOH HOH . K 4 HOH B 56 556 158 HOH HOH . K 4 HOH B 57 557 159 HOH HOH . K 4 HOH B 58 558 161 HOH HOH . K 4 HOH B 59 559 162 HOH HOH . K 4 HOH B 60 560 164 HOH HOH . K 4 HOH B 61 561 165 HOH HOH . K 4 HOH B 62 562 168 HOH HOH . K 4 HOH B 63 563 171 HOH HOH . K 4 HOH B 64 564 172 HOH HOH . K 4 HOH B 65 565 174 HOH HOH . K 4 HOH B 66 566 175 HOH HOH . K 4 HOH B 67 567 177 HOH HOH . K 4 HOH B 68 568 178 HOH HOH . K 4 HOH B 69 569 179 HOH HOH . K 4 HOH B 70 570 181 HOH HOH . K 4 HOH B 71 571 182 HOH HOH . K 4 HOH B 72 572 183 HOH HOH . K 4 HOH B 73 573 184 HOH HOH . K 4 HOH B 74 574 186 HOH HOH . L 4 HOH C 1 101 1 HOH HOH . L 4 HOH C 2 102 2 HOH HOH . L 4 HOH C 3 103 3 HOH HOH . L 4 HOH C 4 104 59 HOH HOH . L 4 HOH C 5 105 70 HOH HOH . L 4 HOH C 6 106 71 HOH HOH . L 4 HOH C 7 107 96 HOH HOH . L 4 HOH C 8 108 105 HOH HOH . L 4 HOH C 9 109 106 HOH HOH . L 4 HOH C 10 110 113 HOH HOH . L 4 HOH C 11 111 143 HOH HOH . L 4 HOH C 12 112 148 HOH HOH . M 4 HOH D 1 101 24 HOH HOH . M 4 HOH D 2 102 27 HOH HOH . M 4 HOH D 3 103 85 HOH HOH . M 4 HOH D 4 104 91 HOH HOH . M 4 HOH D 5 105 100 HOH HOH . M 4 HOH D 6 106 112 HOH HOH . M 4 HOH D 7 107 117 HOH HOH . M 4 HOH D 8 108 122 HOH HOH . M 4 HOH D 9 109 124 HOH HOH . M 4 HOH D 10 110 125 HOH HOH . M 4 HOH D 11 111 132 HOH HOH . M 4 HOH D 12 112 141 HOH HOH . M 4 HOH D 13 113 147 HOH HOH . M 4 HOH D 14 114 157 HOH HOH . M 4 HOH D 15 115 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 21.052 39.82 16.179 1 33.32 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . H 3 21.107 40.073 17.566 1 41.18 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . H 3 19.669 39.304 15.794 1 32.78 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . H 3 19.339 39.743 14.491 1 31.18 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . H 3 19.694 37.78 15.821 1 27.68 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . H 3 18.421 37.281 15.481 1 29.62 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #