data_4E41 # _model_server_result.job_id z45OJ5rHtmH3V2qbEooLIg _model_server_result.datetime_utc '2024-11-04 23:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 4E41 # _exptl.entry_id 4E41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.75 _cell.angle_gamma 90 _cell.entry_id 4E41 _cell.length_a 126.133 _cell.length_b 175.611 _cell.length_c 88.646 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O,P,Q 1 1 F,G,H,I,J,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 86 D CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 D SG CYS 132 D CYS 132 1_555 D SG CYS 182 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf6 D SG CYS 157 D CYS 157 1_555 E SG CYS 166 E CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 E SG CYS 21 E CYS 21 1_555 E SG CYS 89 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 E SG CYS 140 E CYS 140 1_555 E SG CYS 205 E CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf9 F SG CYS 107 F CYS 107 1_555 F SG CYS 163 F CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf10 G SG CYS 15 G CYS 15 1_555 G SG CYS 79 G CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf11 G SG CYS 117 G CYS 117 1_555 G SG CYS 173 G CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf12 I SG CYS 22 I CYS 22 1_555 I SG CYS 86 I CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 I SG CYS 132 I CYS 132 1_555 I SG CYS 182 I CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf14 I SG CYS 157 I CYS 157 1_555 J SG CYS 166 J CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf15 J SG CYS 21 J CYS 21 1_555 J SG CYS 89 J CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf16 J SG CYS 140 J CYS 140 1_555 J SG CYS 205 J CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A OE2 GLU 98 A GLU 98 1_555 K NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc2 A OE1 GLU 98 A GLU 98 1_555 K NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc3 K NA NA . A NA 201 1_555 G O THR 185 G THR 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 K NA NA . A NA 201 1_555 G OG1 THR 185 G THR 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc5 K NA NA . A NA 201 1_555 G OE1 GLU 187 G GLU 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc6 B O THR 185 B THR 185 1_555 L NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 B OG1 THR 185 B THR 185 1_555 L NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc8 L NA NA . B NA 201 1_555 F OE1 GLU 98 F GLU 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4E41 _atom_sites.fract_transf_matrix[1][1] 0.007928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 NA A 1 201 1 NA NA . L 6 NA B 1 201 2 NA NA . M 7 HOH A 1 301 18 HOH HOH . M 7 HOH A 2 302 23 HOH HOH . M 7 HOH A 3 303 26 HOH HOH . M 7 HOH A 4 304 39 HOH HOH . M 7 HOH A 5 305 61 HOH HOH . M 7 HOH A 6 306 69 HOH HOH . M 7 HOH A 7 307 70 HOH HOH . M 7 HOH A 8 308 79 HOH HOH . M 7 HOH A 9 309 90 HOH HOH . M 7 HOH A 10 310 100 HOH HOH . M 7 HOH A 11 311 102 HOH HOH . M 7 HOH A 12 312 113 HOH HOH . M 7 HOH A 13 313 126 HOH HOH . M 7 HOH A 14 314 133 HOH HOH . M 7 HOH A 15 315 137 HOH HOH . M 7 HOH A 16 316 138 HOH HOH . M 7 HOH A 17 317 141 HOH HOH . M 7 HOH A 18 318 146 HOH HOH . M 7 HOH A 19 319 149 HOH HOH . M 7 HOH A 20 320 157 HOH HOH . M 7 HOH A 21 321 160 HOH HOH . M 7 HOH A 22 322 164 HOH HOH . M 7 HOH A 23 323 189 HOH HOH . M 7 HOH A 24 324 193 HOH HOH . M 7 HOH A 25 325 257 HOH HOH . M 7 HOH A 26 326 300 HOH HOH . N 7 HOH B 1 301 1 HOH HOH . N 7 HOH B 2 302 6 HOH HOH . N 7 HOH B 3 303 9 HOH HOH . N 7 HOH B 4 304 14 HOH HOH . N 7 HOH B 5 305 57 HOH HOH . N 7 HOH B 6 306 71 HOH HOH . N 7 HOH B 7 307 91 HOH HOH . N 7 HOH B 8 308 92 HOH HOH . N 7 HOH B 9 309 96 HOH HOH . N 7 HOH B 10 310 97 HOH HOH . N 7 HOH B 11 311 108 HOH HOH . N 7 HOH B 12 312 114 HOH HOH . N 7 HOH B 13 313 124 HOH HOH . N 7 HOH B 14 314 155 HOH HOH . N 7 HOH B 15 315 163 HOH HOH . N 7 HOH B 16 316 194 HOH HOH . N 7 HOH B 17 317 213 HOH HOH . N 7 HOH B 18 318 241 HOH HOH . N 7 HOH B 19 319 268 HOH HOH . N 7 HOH B 20 320 277 HOH HOH . O 7 HOH C 1 101 41 HOH HOH . P 7 HOH D 1 301 5 HOH HOH . P 7 HOH D 2 302 8 HOH HOH . P 7 HOH D 3 303 10 HOH HOH . P 7 HOH D 4 304 11 HOH HOH . P 7 HOH D 5 305 15 HOH HOH . P 7 HOH D 6 306 29 HOH HOH . P 7 HOH D 7 307 30 HOH HOH . P 7 HOH D 8 308 31 HOH HOH . P 7 HOH D 9 309 47 HOH HOH . P 7 HOH D 10 310 66 HOH HOH . P 7 HOH D 11 311 68 HOH HOH . P 7 HOH D 12 312 75 HOH HOH . P 7 HOH D 13 313 77 HOH HOH . P 7 HOH D 14 314 82 HOH HOH . P 7 HOH D 15 315 88 HOH HOH . P 7 HOH D 16 316 99 HOH HOH . P 7 HOH D 17 317 144 HOH HOH . P 7 HOH D 18 318 174 HOH HOH . P 7 HOH D 19 319 267 HOH HOH . P 7 HOH D 20 320 269 HOH HOH . P 7 HOH D 21 321 282 HOH HOH . P 7 HOH D 22 322 292 HOH HOH . Q 7 HOH E 1 301 16 HOH HOH . Q 7 HOH E 2 302 55 HOH HOH . Q 7 HOH E 3 303 58 HOH HOH . Q 7 HOH E 4 304 101 HOH HOH . Q 7 HOH E 5 305 127 HOH HOH . Q 7 HOH E 6 306 139 HOH HOH . Q 7 HOH E 7 307 190 HOH HOH . Q 7 HOH E 8 308 216 HOH HOH . Q 7 HOH E 9 309 227 HOH HOH . Q 7 HOH E 10 310 236 HOH HOH . Q 7 HOH E 11 311 239 HOH HOH . Q 7 HOH E 12 312 254 HOH HOH . Q 7 HOH E 13 313 289 HOH HOH . R 7 HOH F 1 201 24 HOH HOH . R 7 HOH F 2 202 27 HOH HOH . R 7 HOH F 3 203 43 HOH HOH . R 7 HOH F 4 204 63 HOH HOH . R 7 HOH F 5 205 64 HOH HOH . R 7 HOH F 6 206 65 HOH HOH . R 7 HOH F 7 207 67 HOH HOH . R 7 HOH F 8 208 74 HOH HOH . R 7 HOH F 9 209 81 HOH HOH . R 7 HOH F 10 210 83 HOH HOH . R 7 HOH F 11 211 94 HOH HOH . R 7 HOH F 12 212 105 HOH HOH . R 7 HOH F 13 213 128 HOH HOH . R 7 HOH F 14 214 158 HOH HOH . R 7 HOH F 15 215 205 HOH HOH . R 7 HOH F 16 216 220 HOH HOH . R 7 HOH F 17 217 231 HOH HOH . R 7 HOH F 18 218 262 HOH HOH . R 7 HOH F 19 219 266 HOH HOH . R 7 HOH F 20 220 286 HOH HOH . R 7 HOH F 21 221 296 HOH HOH . S 7 HOH G 1 201 17 HOH HOH . S 7 HOH G 2 202 25 HOH HOH . S 7 HOH G 3 203 34 HOH HOH . S 7 HOH G 4 204 35 HOH HOH . S 7 HOH G 5 205 49 HOH HOH . S 7 HOH G 6 206 60 HOH HOH . S 7 HOH G 7 207 73 HOH HOH . S 7 HOH G 8 208 103 HOH HOH . S 7 HOH G 9 209 106 HOH HOH . S 7 HOH G 10 210 117 HOH HOH . S 7 HOH G 11 211 159 HOH HOH . S 7 HOH G 12 212 166 HOH HOH . S 7 HOH G 13 213 176 HOH HOH . S 7 HOH G 14 214 188 HOH HOH . S 7 HOH G 15 215 203 HOH HOH . S 7 HOH G 16 216 206 HOH HOH . S 7 HOH G 17 217 219 HOH HOH . S 7 HOH G 18 218 225 HOH HOH . S 7 HOH G 19 219 251 HOH HOH . S 7 HOH G 20 220 253 HOH HOH . S 7 HOH G 21 221 275 HOH HOH . T 7 HOH H 1 101 2 HOH HOH . T 7 HOH H 2 102 62 HOH HOH . T 7 HOH H 3 103 246 HOH HOH . T 7 HOH H 4 104 291 HOH HOH . U 7 HOH I 1 301 3 HOH HOH . U 7 HOH I 2 302 7 HOH HOH . U 7 HOH I 3 303 19 HOH HOH . U 7 HOH I 4 304 21 HOH HOH . U 7 HOH I 5 305 22 HOH HOH . U 7 HOH I 6 306 28 HOH HOH . U 7 HOH I 7 307 33 HOH HOH . U 7 HOH I 8 308 36 HOH HOH . U 7 HOH I 9 309 38 HOH HOH . U 7 HOH I 10 310 46 HOH HOH . U 7 HOH I 11 311 51 HOH HOH . U 7 HOH I 12 312 59 HOH HOH . U 7 HOH I 13 313 84 HOH HOH . U 7 HOH I 14 314 87 HOH HOH . U 7 HOH I 15 315 125 HOH HOH . U 7 HOH I 16 316 135 HOH HOH . U 7 HOH I 17 317 151 HOH HOH . U 7 HOH I 18 318 177 HOH HOH . U 7 HOH I 19 319 223 HOH HOH . U 7 HOH I 20 320 226 HOH HOH . U 7 HOH I 21 321 235 HOH HOH . U 7 HOH I 22 322 255 HOH HOH . U 7 HOH I 23 323 263 HOH HOH . U 7 HOH I 24 324 288 HOH HOH . U 7 HOH I 25 325 290 HOH HOH . U 7 HOH I 26 326 297 HOH HOH . V 7 HOH J 1 301 4 HOH HOH . V 7 HOH J 2 302 20 HOH HOH . V 7 HOH J 3 303 32 HOH HOH . V 7 HOH J 4 304 37 HOH HOH . V 7 HOH J 5 305 40 HOH HOH . V 7 HOH J 6 306 44 HOH HOH . V 7 HOH J 7 307 53 HOH HOH . V 7 HOH J 8 308 54 HOH HOH . V 7 HOH J 9 309 89 HOH HOH . V 7 HOH J 10 310 93 HOH HOH . V 7 HOH J 11 311 123 HOH HOH . V 7 HOH J 12 312 140 HOH HOH . V 7 HOH J 13 313 152 HOH HOH . V 7 HOH J 14 314 153 HOH HOH . V 7 HOH J 15 315 179 HOH HOH . V 7 HOH J 16 316 182 HOH HOH . V 7 HOH J 17 317 230 HOH HOH . V 7 HOH J 18 318 264 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 6 _atom_site.Cartn_x 390.36 _atom_site.Cartn_y 18.264 _atom_site.Cartn_z 95.854 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #