data_4E43 # _model_server_result.job_id QMJ_PZp7t0IwT8AsOKKluQ _model_server_result.datetime_utc '2024-11-08 08:50:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":106}' # _entry.id 4E43 # _exptl.entry_id 4E43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E43 _cell.length_a 58.29 _cell.length_b 86.259 _cell.length_c 46.299 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 4E43 _atom_sites.fract_transf_matrix[1][1] 0.017156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 DMS A 1 101 3 DMS DMS . E 3 DMS A 1 102 4 DMS DMS . F 4 ACT A 1 103 6 ACT ACT . G 5 GOL A 1 104 8 GOL GOL . H 5 GOL A 1 105 9 GOL GOL . I 5 GOL A 1 106 13 GOL GOL . J 5 GOL A 1 107 16 GOL GOL . K 3 DMS B 1 101 1 DMS DMS . L 3 DMS B 1 102 2 DMS DMS . M 6 BME B 1 103 5 BME BME . N 5 GOL B 1 104 7 GOL GOL . O 5 GOL B 1 105 10 GOL GOL . P 5 GOL B 1 106 11 GOL GOL . Q 5 GOL B 1 107 12 GOL GOL . R 5 GOL B 1 108 14 GOL GOL . S 5 GOL B 1 109 15 GOL GOL . T 7 HOH A 1 201 5 HOH HOH . T 7 HOH A 2 202 7 HOH HOH . T 7 HOH A 3 203 10 HOH HOH . T 7 HOH A 4 204 11 HOH HOH . T 7 HOH A 5 205 12 HOH HOH . T 7 HOH A 6 206 16 HOH HOH . T 7 HOH A 7 207 18 HOH HOH . T 7 HOH A 8 208 19 HOH HOH . T 7 HOH A 9 209 20 HOH HOH . T 7 HOH A 10 210 24 HOH HOH . T 7 HOH A 11 211 26 HOH HOH . T 7 HOH A 12 212 27 HOH HOH . T 7 HOH A 13 213 31 HOH HOH . T 7 HOH A 14 214 34 HOH HOH . T 7 HOH A 15 215 35 HOH HOH . T 7 HOH A 16 216 37 HOH HOH . T 7 HOH A 17 217 39 HOH HOH . T 7 HOH A 18 218 43 HOH HOH . T 7 HOH A 19 219 45 HOH HOH . T 7 HOH A 20 220 48 HOH HOH . T 7 HOH A 21 221 50 HOH HOH . T 7 HOH A 22 222 51 HOH HOH . T 7 HOH A 23 223 53 HOH HOH . T 7 HOH A 24 224 55 HOH HOH . T 7 HOH A 25 225 59 HOH HOH . T 7 HOH A 26 226 60 HOH HOH . T 7 HOH A 27 227 64 HOH HOH . T 7 HOH A 28 228 68 HOH HOH . T 7 HOH A 29 229 70 HOH HOH . T 7 HOH A 30 230 71 HOH HOH . T 7 HOH A 31 231 77 HOH HOH . T 7 HOH A 32 232 79 HOH HOH . T 7 HOH A 33 233 80 HOH HOH . T 7 HOH A 34 234 86 HOH HOH . T 7 HOH A 35 235 89 HOH HOH . T 7 HOH A 36 236 90 HOH HOH . T 7 HOH A 37 237 91 HOH HOH . T 7 HOH A 38 238 92 HOH HOH . T 7 HOH A 39 239 93 HOH HOH . T 7 HOH A 40 240 94 HOH HOH . T 7 HOH A 41 241 95 HOH HOH . T 7 HOH A 42 242 97 HOH HOH . T 7 HOH A 43 243 98 HOH HOH . T 7 HOH A 44 244 104 HOH HOH . T 7 HOH A 45 245 105 HOH HOH . T 7 HOH A 46 246 106 HOH HOH . T 7 HOH A 47 247 108 HOH HOH . T 7 HOH A 48 248 111 HOH HOH . T 7 HOH A 49 249 112 HOH HOH . T 7 HOH A 50 250 113 HOH HOH . T 7 HOH A 51 251 114 HOH HOH . T 7 HOH A 52 252 117 HOH HOH . T 7 HOH A 53 253 119 HOH HOH . T 7 HOH A 54 254 122 HOH HOH . T 7 HOH A 55 255 123 HOH HOH . T 7 HOH A 56 256 125 HOH HOH . T 7 HOH A 57 257 128 HOH HOH . T 7 HOH A 58 258 129 HOH HOH . T 7 HOH A 59 259 130 HOH HOH . T 7 HOH A 60 260 133 HOH HOH . T 7 HOH A 61 261 134 HOH HOH . T 7 HOH A 62 262 135 HOH HOH . T 7 HOH A 63 263 138 HOH HOH . T 7 HOH A 64 264 143 HOH HOH . T 7 HOH A 65 265 144 HOH HOH . T 7 HOH A 66 266 146 HOH HOH . T 7 HOH A 67 267 150 HOH HOH . T 7 HOH A 68 268 153 HOH HOH . T 7 HOH A 69 269 154 HOH HOH . T 7 HOH A 70 270 156 HOH HOH . T 7 HOH A 71 271 157 HOH HOH . T 7 HOH A 72 272 158 HOH HOH . T 7 HOH A 73 273 159 HOH HOH . T 7 HOH A 74 274 160 HOH HOH . T 7 HOH A 75 275 162 HOH HOH . T 7 HOH A 76 276 164 HOH HOH . T 7 HOH A 77 277 165 HOH HOH . T 7 HOH A 78 278 166 HOH HOH . T 7 HOH A 79 279 171 HOH HOH . T 7 HOH A 80 280 172 HOH HOH . T 7 HOH A 81 281 173 HOH HOH . T 7 HOH A 82 282 176 HOH HOH . T 7 HOH A 83 283 178 HOH HOH . T 7 HOH A 84 284 183 HOH HOH . T 7 HOH A 85 285 185 HOH HOH . T 7 HOH A 86 286 28 HOH HOH . U 7 HOH B 1 201 81 HOH HOH . U 7 HOH B 2 202 96 HOH HOH . U 7 HOH B 3 203 1 HOH HOH . U 7 HOH B 4 204 2 HOH HOH . U 7 HOH B 5 205 3 HOH HOH . U 7 HOH B 6 206 4 HOH HOH . U 7 HOH B 7 207 6 HOH HOH . U 7 HOH B 8 208 8 HOH HOH . U 7 HOH B 9 209 9 HOH HOH . U 7 HOH B 10 210 13 HOH HOH . U 7 HOH B 11 211 14 HOH HOH . U 7 HOH B 12 212 15 HOH HOH . U 7 HOH B 13 213 17 HOH HOH . U 7 HOH B 14 214 21 HOH HOH . U 7 HOH B 15 215 22 HOH HOH . U 7 HOH B 16 216 23 HOH HOH . U 7 HOH B 17 217 25 HOH HOH . U 7 HOH B 18 218 29 HOH HOH . U 7 HOH B 19 219 30 HOH HOH . U 7 HOH B 20 220 32 HOH HOH . U 7 HOH B 21 221 33 HOH HOH . U 7 HOH B 22 222 36 HOH HOH . U 7 HOH B 23 223 38 HOH HOH . U 7 HOH B 24 224 40 HOH HOH . U 7 HOH B 25 225 41 HOH HOH . U 7 HOH B 26 226 42 HOH HOH . U 7 HOH B 27 227 44 HOH HOH . U 7 HOH B 28 228 46 HOH HOH . U 7 HOH B 29 229 47 HOH HOH . U 7 HOH B 30 230 49 HOH HOH . U 7 HOH B 31 231 52 HOH HOH . U 7 HOH B 32 232 56 HOH HOH . U 7 HOH B 33 233 57 HOH HOH . U 7 HOH B 34 234 58 HOH HOH . U 7 HOH B 35 235 61 HOH HOH . U 7 HOH B 36 236 62 HOH HOH . U 7 HOH B 37 237 63 HOH HOH . U 7 HOH B 38 238 65 HOH HOH . U 7 HOH B 39 239 66 HOH HOH . U 7 HOH B 40 240 67 HOH HOH . U 7 HOH B 41 241 69 HOH HOH . U 7 HOH B 42 242 72 HOH HOH . U 7 HOH B 43 243 73 HOH HOH . U 7 HOH B 44 244 74 HOH HOH . U 7 HOH B 45 245 75 HOH HOH . U 7 HOH B 46 246 76 HOH HOH . U 7 HOH B 47 247 78 HOH HOH . U 7 HOH B 48 248 82 HOH HOH . U 7 HOH B 49 249 83 HOH HOH . U 7 HOH B 50 250 84 HOH HOH . U 7 HOH B 51 251 85 HOH HOH . U 7 HOH B 52 252 87 HOH HOH . U 7 HOH B 53 253 88 HOH HOH . U 7 HOH B 54 254 99 HOH HOH . U 7 HOH B 55 255 100 HOH HOH . U 7 HOH B 56 256 101 HOH HOH . U 7 HOH B 57 257 102 HOH HOH . U 7 HOH B 58 258 103 HOH HOH . U 7 HOH B 59 259 107 HOH HOH . U 7 HOH B 60 260 109 HOH HOH . U 7 HOH B 61 261 110 HOH HOH . U 7 HOH B 62 262 115 HOH HOH . U 7 HOH B 63 263 116 HOH HOH . U 7 HOH B 64 264 118 HOH HOH . U 7 HOH B 65 265 120 HOH HOH . U 7 HOH B 66 266 121 HOH HOH . U 7 HOH B 67 267 124 HOH HOH . U 7 HOH B 68 268 126 HOH HOH . U 7 HOH B 69 269 127 HOH HOH . U 7 HOH B 70 270 131 HOH HOH . U 7 HOH B 71 271 132 HOH HOH . U 7 HOH B 72 272 136 HOH HOH . U 7 HOH B 73 273 137 HOH HOH . U 7 HOH B 74 274 139 HOH HOH . U 7 HOH B 75 275 140 HOH HOH . U 7 HOH B 76 276 141 HOH HOH . U 7 HOH B 77 277 142 HOH HOH . U 7 HOH B 78 278 145 HOH HOH . U 7 HOH B 79 279 147 HOH HOH . U 7 HOH B 80 280 148 HOH HOH . U 7 HOH B 81 281 149 HOH HOH . U 7 HOH B 82 282 151 HOH HOH . U 7 HOH B 83 283 152 HOH HOH . U 7 HOH B 84 284 155 HOH HOH . U 7 HOH B 85 285 161 HOH HOH . U 7 HOH B 86 286 163 HOH HOH . U 7 HOH B 87 287 167 HOH HOH . U 7 HOH B 88 288 168 HOH HOH . U 7 HOH B 89 289 169 HOH HOH . U 7 HOH B 90 290 170 HOH HOH . U 7 HOH B 91 291 174 HOH HOH . U 7 HOH B 92 292 175 HOH HOH . U 7 HOH B 93 293 177 HOH HOH . U 7 HOH B 94 294 179 HOH HOH . U 7 HOH B 95 295 180 HOH HOH . U 7 HOH B 96 296 181 HOH HOH . U 7 HOH B 97 297 182 HOH HOH . U 7 HOH B 98 298 184 HOH HOH . U 7 HOH B 99 299 186 HOH HOH . U 7 HOH B 100 300 187 HOH HOH . U 7 HOH B 101 301 188 HOH HOH . V 7 HOH C 1 101 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -3.66 37.507 18.62 1 39.07 ? C1 GOL 106 A 1 HETATM 2 O O1 GOL . . . I 5 -3.819 38.098 19.891 1 39.31 ? O1 GOL 106 A 1 HETATM 3 C C2 GOL . . . I 5 -4.34 36.147 18.568 1 40.79 ? C2 GOL 106 A 1 HETATM 4 O O2 GOL . . . I 5 -5.726 36.325 18.744 1 41.65 ? O2 GOL 106 A 1 HETATM 5 C C3 GOL . . . I 5 -4.053 35.508 17.213 1 41.43 ? C3 GOL 106 A 1 HETATM 6 O O3 GOL . . . I 5 -2.867 34.743 17.309 1 41.89 ? O3 GOL 106 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #