data_4E5F
#
_model_server_result.job_id            VDZ789HcNBnE5cji7mHnyQ 
_model_server_result.datetime_utc      '2024-11-05 12:26:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4e5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    4E5F 
#
_exptl.entry_id    4E5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4E5F 
_cell.length_a            126.568 
_cell.length_b            134.321 
_cell.length_c            126.712 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4E5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,Y 1 1 
B,J,K,L,M,N,Z 2 1 
C,O,P,Q,R,S,AA 3 1 
D,T,U,V,W,X,BA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 L N N 
? 3 M N N 
? 3 Q N N 
? 3 R N N 
? 3 V N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 G MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 A OE2 GLU 61 A GLU 80 1_555 H MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 G MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 H MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc5 A OE1 GLU 100 A GLU 119 1_555 G MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc6 A O ILE 101 A ILE 120 1_555 G MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc7 G MN MN . A MN 303 1_555 I O13 0N7 . A 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc8 G MN MN . A MN 303 1_555 I O12 0N7 . A 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc9 H MN MN . A MN 304 1_555 I O12 0N7 . A 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc10 H MN MN . A MN 304 1_555 I O11 0N7 . A 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc11 B NE2 HIS 41 B HIS 41 1_555 L MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc12 B OE1 GLU 61 B GLU 80 1_555 M MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc13 B OD2 ASP 89 B ASP 108 1_555 L MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc14 B OD1 ASP 89 B ASP 108 1_555 M MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc15 B OE1 GLU 100 B GLU 119 1_555 L MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc16 B O ILE 101 B ILE 120 1_555 L MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc17 L MN MN . B MN 303 1_555 N O12 0N7 . B 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc18 L MN MN . B MN 303 1_555 N O13 0N7 . B 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc19 M MN MN . B MN 304 1_555 N O12 0N7 . B 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc20 M MN MN . B MN 304 1_555 N O11 0N7 . B 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc21 C NE2 HIS 41 C HIS 41 1_555 Q MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc22 C OE1 GLU 61 C GLU 80 1_555 R MN MN . C MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc23 C OD2 ASP 89 C ASP 108 1_555 Q MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc24 C OD1 ASP 89 C ASP 108 1_555 R MN MN . C MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc25 C OE1 GLU 100 C GLU 119 1_555 Q MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc26 C O ILE 101 C ILE 120 1_555 Q MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc27 Q MN MN . C MN 303 1_555 S O13 0N7 . C 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc28 Q MN MN . C MN 303 1_555 S O12 0N7 . C 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc29 R MN MN . C MN 304 1_555 S O12 0N7 . C 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc30 R MN MN . C MN 304 1_555 S O11 0N7 . C 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc31 D NE2 HIS 41 D HIS 41 1_555 V MN MN . D MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc32 D OE2 GLU 61 D GLU 80 1_555 W MN MN . D MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc33 D OD2 ASP 89 D ASP 108 1_555 V MN MN . D MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc34 D OD1 ASP 89 D ASP 108 1_555 W MN MN . D MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc35 D OE1 GLU 100 D GLU 119 1_555 V MN MN . D MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc36 D O ILE 101 D ILE 120 1_555 V MN MN . D MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc37 V MN MN . D MN 303 1_555 X O13 0N7 . D 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc38 V MN MN . D MN 303 1_555 X O12 0N7 . D 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc39 W MN MN . D MN 304 1_555 X O12 0N7 . D 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc40 W MN MN . D MN 304 1_555 X O11 0N7 . D 0N7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4E5F 
_atom_sites.fract_transf_matrix[1][1]    0.007901 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007445 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007892 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 301 4 SO4 SO4 . 
F 2 SO4 A 1 302 5 SO4 SO4 . 
G 3 MN A 1 303 1 MN MN . 
H 3 MN A 1 304 2 MN MN . 
I 4 0N7 A 1 305 1 0N7 FLT . 
J 2 SO4 B 1 301 2 SO4 SO4 . 
K 2 SO4 B 1 302 6 SO4 SO4 . 
L 3 MN B 1 303 3 MN MN . 
M 3 MN B 1 304 4 MN MN . 
N 4 0N7 B 1 305 2 0N7 FLT . 
O 2 SO4 C 1 301 1 SO4 SO4 . 
P 2 SO4 C 1 302 7 SO4 SO4 . 
Q 3 MN C 1 303 5 MN MN . 
R 3 MN C 1 304 6 MN MN . 
S 4 0N7 C 1 305 3 0N7 FLT . 
T 2 SO4 D 1 301 3 SO4 SO4 . 
U 2 SO4 D 1 302 8 SO4 SO4 . 
V 3 MN D 1 303 7 MN MN . 
W 3 MN D 1 304 8 MN MN . 
X 4 0N7 D 1 305 4 0N7 FLT . 
Y 5 HOH A 1 401 1 HOH HOH . 
Y 5 HOH A 2 402 6 HOH HOH . 
Y 5 HOH A 3 403 10 HOH HOH . 
Y 5 HOH A 4 404 15 HOH HOH . 
Y 5 HOH A 5 405 20 HOH HOH . 
Y 5 HOH A 6 406 24 HOH HOH . 
Y 5 HOH A 7 407 26 HOH HOH . 
Y 5 HOH A 8 408 29 HOH HOH . 
Y 5 HOH A 9 409 32 HOH HOH . 
Y 5 HOH A 10 410 35 HOH HOH . 
Y 5 HOH A 11 411 43 HOH HOH . 
Y 5 HOH A 12 412 53 HOH HOH . 
Y 5 HOH A 13 413 55 HOH HOH . 
Y 5 HOH A 14 414 59 HOH HOH . 
Y 5 HOH A 15 415 60 HOH HOH . 
Y 5 HOH A 16 416 62 HOH HOH . 
Z 5 HOH B 1 401 2 HOH HOH . 
Z 5 HOH B 2 402 7 HOH HOH . 
Z 5 HOH B 3 403 11 HOH HOH . 
Z 5 HOH B 4 404 16 HOH HOH . 
Z 5 HOH B 5 405 17 HOH HOH . 
Z 5 HOH B 6 406 22 HOH HOH . 
Z 5 HOH B 7 407 25 HOH HOH . 
Z 5 HOH B 8 408 28 HOH HOH . 
Z 5 HOH B 9 409 39 HOH HOH . 
Z 5 HOH B 10 410 40 HOH HOH . 
Z 5 HOH B 11 411 45 HOH HOH . 
Z 5 HOH B 12 412 49 HOH HOH . 
Z 5 HOH B 13 413 54 HOH HOH . 
Z 5 HOH B 14 414 61 HOH HOH . 
Z 5 HOH B 15 415 64 HOH HOH . 
Z 5 HOH B 16 416 66 HOH HOH . 
AA 5 HOH C 1 401 3 HOH HOH . 
AA 5 HOH C 2 402 8 HOH HOH . 
AA 5 HOH C 3 403 12 HOH HOH . 
AA 5 HOH C 4 404 13 HOH HOH . 
AA 5 HOH C 5 405 18 HOH HOH . 
AA 5 HOH C 6 406 23 HOH HOH . 
AA 5 HOH C 7 407 27 HOH HOH . 
AA 5 HOH C 8 408 31 HOH HOH . 
AA 5 HOH C 9 409 34 HOH HOH . 
AA 5 HOH C 10 410 38 HOH HOH . 
AA 5 HOH C 11 411 44 HOH HOH . 
AA 5 HOH C 12 412 48 HOH HOH . 
AA 5 HOH C 13 413 51 HOH HOH . 
AA 5 HOH C 14 414 56 HOH HOH . 
AA 5 HOH C 15 415 63 HOH HOH . 
BA 5 HOH D 1 401 4 HOH HOH . 
BA 5 HOH D 2 402 5 HOH HOH . 
BA 5 HOH D 3 403 9 HOH HOH . 
BA 5 HOH D 4 404 14 HOH HOH . 
BA 5 HOH D 5 405 19 HOH HOH . 
BA 5 HOH D 6 406 21 HOH HOH . 
BA 5 HOH D 7 407 30 HOH HOH . 
BA 5 HOH D 8 408 33 HOH HOH . 
BA 5 HOH D 9 409 36 HOH HOH . 
BA 5 HOH D 10 410 37 HOH HOH . 
BA 5 HOH D 11 411 41 HOH HOH . 
BA 5 HOH D 12 412 42 HOH HOH . 
BA 5 HOH D 13 413 46 HOH HOH . 
BA 5 HOH D 14 414 47 HOH HOH . 
BA 5 HOH D 15 415 50 HOH HOH . 
BA 5 HOH D 16 416 52 HOH HOH . 
BA 5 HOH D 17 417 57 HOH HOH . 
BA 5 HOH D 18 418 58 HOH HOH . 
BA 5 HOH D 19 419 65 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -14.77 
_atom_site.Cartn_y               -20.281 
_atom_site.Cartn_z               -22.485 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.15 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           210 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#