data_4E5H # _model_server_result.job_id pBCfwfYOKc1UBcxzTv7few _model_server_result.datetime_utc '2024-11-22 14:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":305}' # _entry.id 4E5H # _exptl.entry_id 4E5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.894 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E5H _cell.length_a 126.101 _cell.length_b 134.825 _cell.length_c 125.905 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,V 1 1 B,I,J,K,L,W 2 1 C,M,N,O,P,X 3 1 D,Q,R,S,T,U,Y 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 G MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OE2 GLU 61 A GLU 80 1_555 H MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 G MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 H MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 A OE1 GLU 100 A GLU 119 1_555 G MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc6 A O ILE 101 A ILE 120 1_555 G MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc7 B NE2 HIS 41 B HIS 41 1_555 K MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc8 B OE1 GLU 61 B GLU 80 1_555 L MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc9 B OD2 ASP 89 B ASP 108 1_555 K MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 B OD1 ASP 89 B ASP 108 1_555 L MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc11 B OE1 GLU 100 B GLU 119 1_555 K MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc12 B O ILE 101 B ILE 120 1_555 K MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc13 C NE2 HIS 41 C HIS 41 1_555 O MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc14 C OE1 GLU 61 C GLU 80 1_555 P MN MN . C MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc15 C OD2 ASP 89 C ASP 108 1_555 O MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc16 C OD1 ASP 89 C ASP 108 1_555 P MN MN . C MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc17 C OE1 GLU 100 C GLU 119 1_555 O MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc18 C O ILE 101 C ILE 120 1_555 O MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc19 D NE2 HIS 41 D HIS 41 1_555 S MN MN . D MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc20 D OD2 ASP 89 D ASP 108 1_555 S MN MN . D MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc21 D OD1 ASP 89 D ASP 108 1_555 T MN MN . D MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc22 D OE1 GLU 100 D GLU 119 1_555 S MN MN . D MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc23 D O ILE 101 D ILE 120 1_555 S MN MN . D MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc24 S MN MN . D MN 303 1_555 U O25 0N8 . D 0N8 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc25 S MN MN . D MN 303 1_555 U O28 0N8 . D 0N8 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc26 T MN MN . D MN 304 1_555 U O27 0N8 . D 0N8 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc27 T MN MN . D MN 304 1_555 U O28 0N8 . D 0N8 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'C23 H24 Cl N O4' _chem_comp.formula_weight 413.894 _chem_comp.id 0N8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 0N8 doub 1 n y C6 C5 0N8 sing 2 n y C1 C2 0N8 sing 3 n y O27 C14 0N8 doub 4 n n C12 C13 0N8 sing 5 n n C12 C11 0N8 sing 6 n n C5 C4 0N8 doub 7 n y C13 N8 0N8 sing 8 n n C2 C7 0N8 sing 9 n n C2 C3 0N8 doub 10 n y O28 C23 0N8 sing 11 n n C7 N8 0N8 sing 12 n n C15 C11 0N8 sing 13 n n C15 C16 0N8 sing 14 n n C14 C11 0N8 sing 15 n n C14 C22 0N8 sing 16 n n C11 C10 0N8 sing 17 n n N8 C9 0N8 sing 18 n n C4 C3 0N8 sing 19 n y C16 C21 0N8 doub 20 n y C16 C17 0N8 sing 21 n y C23 C22 0N8 doub 22 z n C23 C24 0N8 sing 23 n n C21 C20 0N8 sing 24 n y C17 C18 0N8 doub 25 n y O25 C24 0N8 doub 26 n n C10 C9 0N8 sing 27 n n C24 O26 0N8 sing 28 n n C20 C19 0N8 doub 29 n y C18 C19 0N8 sing 30 n y C19 CL2 0N8 sing 31 n n C18 H1 0N8 sing 32 n n C17 H2 0N8 sing 33 n n C20 H3 0N8 sing 34 n n C21 H4 0N8 sing 35 n n C15 H5 0N8 sing 36 n n C15 H6 0N8 sing 37 n n C10 H7 0N8 sing 38 n n C10 H8 0N8 sing 39 n n C9 H9 0N8 sing 40 n n C9 H10 0N8 sing 41 n n C22 H11 0N8 sing 42 n n O28 H14 0N8 sing 43 n n O26 H15 0N8 sing 44 n n C12 H16 0N8 sing 45 n n C12 H17 0N8 sing 46 n n C13 H18 0N8 sing 47 n n C13 H19 0N8 sing 48 n n C7 H21 0N8 sing 49 n n C7 H22 0N8 sing 50 n n C3 H23 0N8 sing 51 n n C4 H24 0N8 sing 52 n n C5 H25 0N8 sing 53 n n C6 H26 0N8 sing 54 n n C1 H27 0N8 sing 55 n n # _atom_sites.entry_id 4E5H _atom_sites.fract_transf_matrix[1][1] 0.00793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 301 4 SO4 SO4 . F 2 SO4 A 1 302 5 SO4 SO4 . G 3 MN A 1 303 1 MN MN . H 3 MN A 1 304 5 MN MN . I 2 SO4 B 1 301 2 SO4 SO4 . J 2 SO4 B 1 302 6 SO4 SO4 . K 3 MN B 1 303 2 MN MN . L 3 MN B 1 304 7 MN MN . M 2 SO4 C 1 301 1 SO4 SO4 . N 2 SO4 C 1 302 7 SO4 SO4 . O 3 MN C 1 303 3 MN MN . P 3 MN C 1 304 8 MN MN . Q 2 SO4 D 1 301 3 SO4 SO4 . R 2 SO4 D 1 302 8 SO4 SO4 . S 3 MN D 1 303 4 MN MN . T 3 MN D 1 304 6 MN MN . U 4 0N8 D 1 305 1 0N8 0N8 . V 5 HOH A 1 401 2 HOH HOH . V 5 HOH A 2 402 9 HOH HOH . V 5 HOH A 3 403 12 HOH HOH . V 5 HOH A 4 404 13 HOH HOH . V 5 HOH A 5 405 15 HOH HOH . V 5 HOH A 6 406 20 HOH HOH . V 5 HOH A 7 407 29 HOH HOH . V 5 HOH A 8 408 34 HOH HOH . V 5 HOH A 9 409 38 HOH HOH . V 5 HOH A 10 410 47 HOH HOH . W 5 HOH B 1 401 3 HOH HOH . W 5 HOH B 2 402 5 HOH HOH . W 5 HOH B 3 403 6 HOH HOH . W 5 HOH B 4 404 7 HOH HOH . W 5 HOH B 5 405 22 HOH HOH . W 5 HOH B 6 406 23 HOH HOH . W 5 HOH B 7 407 25 HOH HOH . W 5 HOH B 8 408 26 HOH HOH . W 5 HOH B 9 409 30 HOH HOH . W 5 HOH B 10 410 32 HOH HOH . W 5 HOH B 11 411 35 HOH HOH . W 5 HOH B 12 412 40 HOH HOH . W 5 HOH B 13 413 41 HOH HOH . W 5 HOH B 14 414 42 HOH HOH . W 5 HOH B 15 415 43 HOH HOH . W 5 HOH B 16 416 46 HOH HOH . X 5 HOH C 1 401 4 HOH HOH . X 5 HOH C 2 402 10 HOH HOH . X 5 HOH C 3 403 11 HOH HOH . X 5 HOH C 4 404 14 HOH HOH . X 5 HOH C 5 405 16 HOH HOH . X 5 HOH C 6 406 21 HOH HOH . X 5 HOH C 7 407 24 HOH HOH . X 5 HOH C 8 408 39 HOH HOH . X 5 HOH C 9 409 45 HOH HOH . X 5 HOH C 10 410 48 HOH HOH . X 5 HOH C 11 411 49 HOH HOH . X 5 HOH C 12 412 50 HOH HOH . Y 5 HOH D 1 401 1 HOH HOH . Y 5 HOH D 2 402 8 HOH HOH . Y 5 HOH D 3 403 17 HOH HOH . Y 5 HOH D 4 404 18 HOH HOH . Y 5 HOH D 5 405 19 HOH HOH . Y 5 HOH D 6 406 27 HOH HOH . Y 5 HOH D 7 407 28 HOH HOH . Y 5 HOH D 8 408 31 HOH HOH . Y 5 HOH D 9 409 33 HOH HOH . Y 5 HOH D 10 410 36 HOH HOH . Y 5 HOH D 11 411 37 HOH HOH . Y 5 HOH D 12 412 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL2 0N8 . . . U 4 -49.335 -9.939 27.978 1 100.2 ? CL2 0N8 305 D 1 HETATM 2 C C19 0N8 . . . U 4 -50.066 -11.118 26.835 1 99.47 ? C19 0N8 305 D 1 HETATM 3 C C18 0N8 . . . U 4 -49.265 -11.853 25.97 1 99.01 ? C18 0N8 305 D 1 HETATM 4 C C17 0N8 . . . U 4 -49.841 -12.763 25.089 1 98.53 ? C17 0N8 305 D 1 HETATM 5 C C20 0N8 . . . U 4 -51.443 -11.297 26.814 1 99.14 ? C20 0N8 305 D 1 HETATM 6 C C21 0N8 . . . U 4 -52.018 -12.206 25.933 1 98.56 ? C21 0N8 305 D 1 HETATM 7 C C16 0N8 . . . U 4 -51.219 -12.945 25.073 1 97.88 ? C16 0N8 305 D 1 HETATM 8 C C15 0N8 . . . U 4 -51.859 -13.921 24.111 1 96.52 ? C15 0N8 305 D 1 HETATM 9 C C11 0N8 . . . U 4 -51.586 -15.376 24.471 1 95.61 ? C11 0N8 305 D 1 HETATM 10 C C10 0N8 . . . U 4 -51.914 -15.64 25.931 1 95.83 ? C10 0N8 305 D 1 HETATM 11 C C9 0N8 . . . U 4 -53.325 -15.162 26.227 1 96.2 ? C9 0N8 305 D 1 HETATM 12 C C14 0N8 . . . U 4 -50.149 -15.717 24.204 1 94.2 ? C14 0N8 305 D 1 HETATM 13 O O27 0N8 . . . U 4 -49.796 -15.775 23.037 1 94.08 ? O27 0N8 305 D 1 HETATM 14 C C22 0N8 . . . U 4 -49.202 -15.996 25.358 1 92.02 ? C22 0N8 305 D 1 HETATM 15 C C23 0N8 . . . U 4 -48.251 -16.871 24.999 1 89.81 ? C23 0N8 305 D 1 HETATM 16 O O28 0N8 . . . U 4 -48.034 -17.094 23.717 1 88.7 ? O28 0N8 305 D 1 HETATM 17 C C24 0N8 . . . U 4 -47.435 -17.582 25.983 1 88.8 ? C24 0N8 305 D 1 HETATM 18 O O26 0N8 . . . U 4 -47.626 -17.376 27.197 1 88.48 ? O26 0N8 305 D 1 HETATM 19 O O25 0N8 . . . U 4 -46.558 -18.381 25.582 1 87.19 ? O25 0N8 305 D 1 HETATM 20 C C12 0N8 . . . U 4 -52.413 -16.272 23.562 1 95.7 ? C12 0N8 305 D 1 HETATM 21 C C13 0N8 . . . U 4 -53.762 -16.572 24.187 1 95.91 ? C13 0N8 305 D 1 HETATM 22 N N8 0N8 . . . U 4 -54.06 -15.405 24.996 1 96.27 ? N8 0N8 305 D 1 HETATM 23 C C7 0N8 . . . U 4 -55.109 -14.496 24.579 1 96.8 ? C7 0N8 305 D 1 HETATM 24 C C2 0N8 . . . U 4 -56.212 -15.347 24.008 1 97.24 ? C2 0N8 305 D 1 HETATM 25 C C3 0N8 . . . U 4 -57.497 -15.271 24.53 1 97.65 ? C3 0N8 305 D 1 HETATM 26 C C4 0N8 . . . U 4 -58.509 -16.061 23.999 1 97.78 ? C4 0N8 305 D 1 HETATM 27 C C5 0N8 . . . U 4 -58.224 -16.925 22.952 1 97.45 ? C5 0N8 305 D 1 HETATM 28 C C6 0N8 . . . U 4 -56.935 -16.998 22.436 1 97.36 ? C6 0N8 305 D 1 HETATM 29 C C1 0N8 . . . U 4 -55.924 -16.211 22.965 1 96.76 ? C1 0N8 305 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #