data_4E5J
#
_model_server_result.job_id            YhXvJ6EO7yrtM7GPa3RFvQ 
_model_server_result.datetime_utc      '2024-10-18 14:34:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4e5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":304}' 
#
_entry.id    4E5J 
#
_exptl.entry_id    4E5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              289.244 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[3-(acetylamino)phenyl]-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4E5J 
_cell.length_a            126.098 
_cell.length_b            134.087 
_cell.length_c            126.64 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4E5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,CA 1 1 
B,K,L,M,N,O,P,DA 2 1 
C,Q,R,S,T,U,V,EA 3 1 
D,W,X,Y,Z,AA,BA,FA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 M N N 
? 3 N N N 
? 3 S N N 
? 3 T N N 
? 3 Y N N 
? 3 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc2 A OE1 GLU 61 A GLU 80 1_555 J MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 J MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc5 A OE2 GLU 100 A GLU 119 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc6 A O ILE 101 A ILE 120 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc7 G O2 581 . A 581 303 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc8 G O1 581 . A 581 303 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc9 G O3 581 . A 581 303 1_555 J MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc10 G O2 581 . A 581 303 1_555 J MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc11 B NE2 HIS 41 B HIS 41 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc12 B OE1 GLU 61 B GLU 80 1_555 P MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc13 B OD2 ASP 89 B ASP 108 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc14 B OD1 ASP 89 B ASP 108 1_555 P MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc15 B OE1 GLU 100 B GLU 119 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc16 B O ILE 101 B ILE 120 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc17 M O2 581 . B 581 303 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc18 M O1 581 . B 581 303 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc19 M O3 581 . B 581 303 1_555 P MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
metalc ? metalc20 M O2 581 . B 581 303 1_555 P MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc21 C NE2 HIS 41 C HIS 41 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc22 C OE1 GLU 61 C GLU 80 1_555 V MN MN . C MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc23 C OD2 ASP 89 C ASP 108 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc24 C OD1 ASP 89 C ASP 108 1_555 V MN MN . C MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc25 C OE1 GLU 100 C GLU 119 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc26 C O ILE 101 C ILE 120 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc27 S O1 581 . C 581 303 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc28 S O2 581 . C 581 303 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc29 S O2 581 . C 581 303 1_555 V MN MN . C MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc30 S O4 581 . C 581 303 1_555 V MN MN . C MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc31 D NE2 HIS 41 D HIS 41 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc32 D OE1 GLU 61 D GLU 80 1_555 BA MN MN . D MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc33 D OD2 ASP 89 D ASP 108 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc34 D OD1 ASP 89 D ASP 108 1_555 BA MN MN . D MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc35 D OE1 GLU 100 D GLU 119 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc36 D O ILE 101 D ILE 120 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc37 Y O2 581 . D 581 303 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc38 Y O1 581 . D 581 303 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc39 Y O4 581 . D 581 303 1_555 BA MN MN . D MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc40 Y O2 581 . D 581 303 1_555 BA MN MN . D MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
#
_chem_comp.formula           'C13 H11 N3 O5' 
_chem_comp.formula_weight    289.244 
_chem_comp.id                581 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[3-(acetylamino)phenyl]-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C12 581 doub 1 n n 
C12 C13 581 sing 2 n n 
C12 N3 581 sing 3 n n 
N3 C3 581 sing 4 n n 
C2 C3 581 doub 5 n y 
C2 C1 581 sing 6 n y 
C3 C4 581 sing 7 n y 
C1 C6 581 doub 8 n y 
C4 C5 581 doub 9 n y 
C6 C5 581 sing 10 n y 
C5 C7 581 sing 11 n n 
C7 N2 581 sing 12 n n 
C7 N1 581 doub 13 n n 
N2 C10 581 sing 14 n n 
N1 C8 581 sing 15 n n 
C10 O1 581 doub 16 n n 
C10 C9 581 sing 17 n n 
C8 C9 581 doub 18 n n 
C8 C11 581 sing 19 n n 
C9 O2 581 sing 20 n n 
O4 C11 581 doub 21 n n 
C11 O3 581 sing 22 n n 
C13 H1 581 sing 23 n n 
C13 H2 581 sing 24 n n 
C13 H3 581 sing 25 n n 
N3 H4 581 sing 26 n n 
C2 H5 581 sing 27 n n 
C1 H6 581 sing 28 n n 
C4 H7 581 sing 29 n n 
C6 H8 581 sing 30 n n 
O2 H9 581 sing 31 n n 
O3 H11 581 sing 32 n n 
N2 H12 581 sing 33 n n 
#
_atom_sites.entry_id                     4E5J 
_atom_sites.fract_transf_matrix[1][1]    0.00793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 301 4 SO4 SO4 . 
F 2 SO4 A 1 302 5 SO4 SO4 . 
G 3 581 A 1 303 1 581 581 . 
H 3 581 A 1 304 7 581 581 . 
I 4 MN A 1 305 1 MN MN . 
J 4 MN A 1 306 2 MN MN . 
K 2 SO4 B 1 301 2 SO4 SO4 . 
L 2 SO4 B 1 302 6 SO4 SO4 . 
M 3 581 B 1 303 2 581 581 . 
N 3 581 B 1 304 8 581 581 . 
O 4 MN B 1 305 3 MN MN . 
P 4 MN B 1 306 4 MN MN . 
Q 2 SO4 C 1 301 1 SO4 SO4 . 
R 2 SO4 C 1 302 7 SO4 SO4 . 
S 3 581 C 1 303 3 581 581 . 
T 3 581 C 1 304 5 581 581 . 
U 4 MN C 1 305 5 MN MN . 
V 4 MN C 1 306 6 MN MN . 
W 2 SO4 D 1 301 3 SO4 SO4 . 
X 2 SO4 D 1 302 8 SO4 SO4 . 
Y 3 581 D 1 303 4 581 581 . 
Z 3 581 D 1 304 6 581 581 . 
AA 4 MN D 1 305 7 MN MN . 
BA 4 MN D 1 306 8 MN MN . 
CA 5 HOH A 1 401 1 HOH HOH . 
CA 5 HOH A 2 402 5 HOH HOH . 
CA 5 HOH A 3 403 6 HOH HOH . 
CA 5 HOH A 4 404 7 HOH HOH . 
CA 5 HOH A 5 405 13 HOH HOH . 
CA 5 HOH A 6 406 16 HOH HOH . 
CA 5 HOH A 7 407 25 HOH HOH . 
CA 5 HOH A 8 408 26 HOH HOH . 
CA 5 HOH A 9 409 32 HOH HOH . 
CA 5 HOH A 10 410 44 HOH HOH . 
CA 5 HOH A 11 411 48 HOH HOH . 
DA 5 HOH B 1 401 2 HOH HOH . 
DA 5 HOH B 2 402 8 HOH HOH . 
DA 5 HOH B 3 403 14 HOH HOH . 
DA 5 HOH B 4 404 17 HOH HOH . 
DA 5 HOH B 5 405 21 HOH HOH . 
DA 5 HOH B 6 406 22 HOH HOH . 
DA 5 HOH B 7 407 33 HOH HOH . 
DA 5 HOH B 8 408 34 HOH HOH . 
DA 5 HOH B 9 409 35 HOH HOH . 
DA 5 HOH B 10 410 38 HOH HOH . 
DA 5 HOH B 11 411 45 HOH HOH . 
EA 5 HOH C 1 401 3 HOH HOH . 
EA 5 HOH C 2 402 9 HOH HOH . 
EA 5 HOH C 3 403 15 HOH HOH . 
EA 5 HOH C 4 404 18 HOH HOH . 
EA 5 HOH C 5 405 23 HOH HOH . 
EA 5 HOH C 6 406 27 HOH HOH . 
EA 5 HOH C 7 407 29 HOH HOH . 
EA 5 HOH C 8 408 30 HOH HOH . 
EA 5 HOH C 9 409 36 HOH HOH . 
EA 5 HOH C 10 410 42 HOH HOH . 
EA 5 HOH C 11 411 47 HOH HOH . 
FA 5 HOH D 1 401 4 HOH HOH . 
FA 5 HOH D 2 402 10 HOH HOH . 
FA 5 HOH D 3 403 11 HOH HOH . 
FA 5 HOH D 4 404 12 HOH HOH . 
FA 5 HOH D 5 405 19 HOH HOH . 
FA 5 HOH D 6 406 20 HOH HOH . 
FA 5 HOH D 7 407 24 HOH HOH . 
FA 5 HOH D 8 408 28 HOH HOH . 
FA 5 HOH D 9 409 31 HOH HOH . 
FA 5 HOH D 10 410 37 HOH HOH . 
FA 5 HOH D 11 411 39 HOH HOH . 
FA 5 HOH D 12 412 40 HOH HOH . 
FA 5 HOH D 13 413 41 HOH HOH . 
FA 5 HOH D 14 414 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 581 . . . H 3 -19.238 -17.097 -27.535 1 54.23 ? O5 581 304 A 1 
HETATM 2 C C12 581 . . . H 3 -18.076 -17.388 -27.698 1 53.7 ? C12 581 304 A 1 
HETATM 3 C C13 581 . . . H 3 -17.436 -17.584 -29.031 1 54.36 ? C13 581 304 A 1 
HETATM 4 N N3 581 . . . H 3 -17.268 -17.56 -26.707 1 52.1 ? N3 581 304 A 1 
HETATM 5 C C3 581 . . . H 3 -16.288 -16.692 -26.714 1 53.34 ? C3 581 304 A 1 
HETATM 6 C C2 581 . . . H 3 -15.648 -16.234 -25.584 1 52.69 ? C2 581 304 A 1 
HETATM 7 C C1 581 . . . H 3 -14.622 -15.312 -25.718 1 53.25 ? C1 581 304 A 1 
HETATM 8 C C4 581 . . . H 3 -15.94 -16.227 -27.939 1 53.51 ? C4 581 304 A 1 
HETATM 9 C C5 581 . . . H 3 -14.937 -15.324 -28.079 1 54.77 ? C5 581 304 A 1 
HETATM 10 C C6 581 . . . H 3 -14.269 -14.853 -26.975 1 53.58 ? C6 581 304 A 1 
HETATM 11 C C7 581 . . . H 3 -14.636 -14.892 -29.445 1 57.94 ? C7 581 304 A 1 
HETATM 12 N N2 581 . . . H 3 -13.384 -14.657 -29.742 1 60.07 ? N2 581 304 A 1 
HETATM 13 C C10 581 . . . H 3 -13.062 -14.263 -30.948 1 61.65 ? C10 581 304 A 1 
HETATM 14 O O1 581 . . . H 3 -11.897 -14.035 -31.215 1 62.74 ? O1 581 304 A 1 
HETATM 15 C C9 581 . . . H 3 -14.073 -14.089 -31.98 1 61.53 ? C9 581 304 A 1 
HETATM 16 O O2 581 . . . H 3 -13.761 -13.697 -33.225 1 63.17 ? O2 581 304 A 1 
HETATM 17 C C8 581 . . . H 3 -15.444 -14.36 -31.621 1 60.13 ? C8 581 304 A 1 
HETATM 18 N N1 581 . . . H 3 -15.632 -14.772 -30.351 1 59.25 ? N1 581 304 A 1 
HETATM 19 C C11 581 . . . H 3 -16.529 -14.221 -32.656 1 59.82 ? C11 581 304 A 1 
HETATM 20 O O3 581 . . . H 3 -17.471 -14.976 -32.588 1 58.81 ? O3 581 304 A 1 
HETATM 21 O O4 581 . . . H 3 -16.506 -13.406 -33.58 1 58.91 ? O4 581 304 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#