data_4E5J # _model_server_result.job_id dVk5oIJX26tO_EjTQAGWBw _model_server_result.datetime_utc '2024-11-28 07:00:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4e5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":304}' # _entry.id 4E5J # _exptl.entry_id 4E5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 289.244 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[3-(acetylamino)phenyl]-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4E5J _cell.length_a 126.098 _cell.length_b 134.087 _cell.length_c 126.64 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4E5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,CA 1 1 B,K,L,M,N,O,P,DA 2 1 C,Q,R,S,T,U,V,EA 3 1 D,W,X,Y,Z,AA,BA,FA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 M N N ? 3 N N N ? 3 S N N ? 3 T N N ? 3 Y N N ? 3 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A OE1 GLU 61 A GLU 80 1_555 J MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 J MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc5 A OE2 GLU 100 A GLU 119 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc6 A O ILE 101 A ILE 120 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc7 G O2 581 . A 581 303 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc8 G O1 581 . A 581 303 1_555 I MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc9 G O3 581 . A 581 303 1_555 J MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc10 G O2 581 . A 581 303 1_555 J MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc11 B NE2 HIS 41 B HIS 41 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc12 B OE1 GLU 61 B GLU 80 1_555 P MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc13 B OD2 ASP 89 B ASP 108 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc14 B OD1 ASP 89 B ASP 108 1_555 P MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc15 B OE1 GLU 100 B GLU 119 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc16 B O ILE 101 B ILE 120 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc17 M O2 581 . B 581 303 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc18 M O1 581 . B 581 303 1_555 O MN MN . B MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc19 M O3 581 . B 581 303 1_555 P MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc20 M O2 581 . B 581 303 1_555 P MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc21 C NE2 HIS 41 C HIS 41 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc22 C OE1 GLU 61 C GLU 80 1_555 V MN MN . C MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc23 C OD2 ASP 89 C ASP 108 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc24 C OD1 ASP 89 C ASP 108 1_555 V MN MN . C MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc25 C OE1 GLU 100 C GLU 119 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc26 C O ILE 101 C ILE 120 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc27 S O1 581 . C 581 303 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc28 S O2 581 . C 581 303 1_555 U MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc29 S O2 581 . C 581 303 1_555 V MN MN . C MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc30 S O4 581 . C 581 303 1_555 V MN MN . C MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc31 D NE2 HIS 41 D HIS 41 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc32 D OE1 GLU 61 D GLU 80 1_555 BA MN MN . D MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc33 D OD2 ASP 89 D ASP 108 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc34 D OD1 ASP 89 D ASP 108 1_555 BA MN MN . D MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc35 D OE1 GLU 100 D GLU 119 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc36 D O ILE 101 D ILE 120 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc37 Y O2 581 . D 581 303 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc38 Y O1 581 . D 581 303 1_555 AA MN MN . D MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc39 Y O4 581 . D 581 303 1_555 BA MN MN . D MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc40 Y O2 581 . D 581 303 1_555 BA MN MN . D MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C13 H11 N3 O5' _chem_comp.formula_weight 289.244 _chem_comp.id 581 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[3-(acetylamino)phenyl]-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C12 581 doub 1 n n C12 C13 581 sing 2 n n C12 N3 581 sing 3 n n N3 C3 581 sing 4 n n C2 C3 581 doub 5 n y C2 C1 581 sing 6 n y C3 C4 581 sing 7 n y C1 C6 581 doub 8 n y C4 C5 581 doub 9 n y C6 C5 581 sing 10 n y C5 C7 581 sing 11 n n C7 N2 581 sing 12 n n C7 N1 581 doub 13 n n N2 C10 581 sing 14 n n N1 C8 581 sing 15 n n C10 O1 581 doub 16 n n C10 C9 581 sing 17 n n C8 C9 581 doub 18 n n C8 C11 581 sing 19 n n C9 O2 581 sing 20 n n O4 C11 581 doub 21 n n C11 O3 581 sing 22 n n C13 H1 581 sing 23 n n C13 H2 581 sing 24 n n C13 H3 581 sing 25 n n N3 H4 581 sing 26 n n C2 H5 581 sing 27 n n C1 H6 581 sing 28 n n C4 H7 581 sing 29 n n C6 H8 581 sing 30 n n O2 H9 581 sing 31 n n O3 H11 581 sing 32 n n N2 H12 581 sing 33 n n # _atom_sites.entry_id 4E5J _atom_sites.fract_transf_matrix[1][1] 0.00793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 301 4 SO4 SO4 . F 2 SO4 A 1 302 5 SO4 SO4 . G 3 581 A 1 303 1 581 581 . H 3 581 A 1 304 7 581 581 . I 4 MN A 1 305 1 MN MN . J 4 MN A 1 306 2 MN MN . K 2 SO4 B 1 301 2 SO4 SO4 . L 2 SO4 B 1 302 6 SO4 SO4 . M 3 581 B 1 303 2 581 581 . N 3 581 B 1 304 8 581 581 . O 4 MN B 1 305 3 MN MN . P 4 MN B 1 306 4 MN MN . Q 2 SO4 C 1 301 1 SO4 SO4 . R 2 SO4 C 1 302 7 SO4 SO4 . S 3 581 C 1 303 3 581 581 . T 3 581 C 1 304 5 581 581 . U 4 MN C 1 305 5 MN MN . V 4 MN C 1 306 6 MN MN . W 2 SO4 D 1 301 3 SO4 SO4 . X 2 SO4 D 1 302 8 SO4 SO4 . Y 3 581 D 1 303 4 581 581 . Z 3 581 D 1 304 6 581 581 . AA 4 MN D 1 305 7 MN MN . BA 4 MN D 1 306 8 MN MN . CA 5 HOH A 1 401 1 HOH HOH . CA 5 HOH A 2 402 5 HOH HOH . CA 5 HOH A 3 403 6 HOH HOH . CA 5 HOH A 4 404 7 HOH HOH . CA 5 HOH A 5 405 13 HOH HOH . CA 5 HOH A 6 406 16 HOH HOH . CA 5 HOH A 7 407 25 HOH HOH . CA 5 HOH A 8 408 26 HOH HOH . CA 5 HOH A 9 409 32 HOH HOH . CA 5 HOH A 10 410 44 HOH HOH . CA 5 HOH A 11 411 48 HOH HOH . DA 5 HOH B 1 401 2 HOH HOH . DA 5 HOH B 2 402 8 HOH HOH . DA 5 HOH B 3 403 14 HOH HOH . DA 5 HOH B 4 404 17 HOH HOH . DA 5 HOH B 5 405 21 HOH HOH . DA 5 HOH B 6 406 22 HOH HOH . DA 5 HOH B 7 407 33 HOH HOH . DA 5 HOH B 8 408 34 HOH HOH . DA 5 HOH B 9 409 35 HOH HOH . DA 5 HOH B 10 410 38 HOH HOH . DA 5 HOH B 11 411 45 HOH HOH . EA 5 HOH C 1 401 3 HOH HOH . EA 5 HOH C 2 402 9 HOH HOH . EA 5 HOH C 3 403 15 HOH HOH . EA 5 HOH C 4 404 18 HOH HOH . EA 5 HOH C 5 405 23 HOH HOH . EA 5 HOH C 6 406 27 HOH HOH . EA 5 HOH C 7 407 29 HOH HOH . EA 5 HOH C 8 408 30 HOH HOH . EA 5 HOH C 9 409 36 HOH HOH . EA 5 HOH C 10 410 42 HOH HOH . EA 5 HOH C 11 411 47 HOH HOH . FA 5 HOH D 1 401 4 HOH HOH . FA 5 HOH D 2 402 10 HOH HOH . FA 5 HOH D 3 403 11 HOH HOH . FA 5 HOH D 4 404 12 HOH HOH . FA 5 HOH D 5 405 19 HOH HOH . FA 5 HOH D 6 406 20 HOH HOH . FA 5 HOH D 7 407 24 HOH HOH . FA 5 HOH D 8 408 28 HOH HOH . FA 5 HOH D 9 409 31 HOH HOH . FA 5 HOH D 10 410 37 HOH HOH . FA 5 HOH D 11 411 39 HOH HOH . FA 5 HOH D 12 412 40 HOH HOH . FA 5 HOH D 13 413 41 HOH HOH . FA 5 HOH D 14 414 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 581 . . . Z 3 -41.872 -14.975 28.61 1 76.65 ? O5 581 304 D 1 HETATM 2 C C12 581 . . . Z 3 -43.077 -15.034 28.842 1 75.4 ? C12 581 304 D 1 HETATM 3 C C13 581 . . . Z 3 -43.672 -14.922 30.217 1 74.72 ? C13 581 304 D 1 HETATM 4 N N3 581 . . . Z 3 -43.977 -15.183 27.903 1 74.77 ? N3 581 304 D 1 HETATM 5 C C3 581 . . . Z 3 -44.986 -14.292 27.882 1 74.2 ? C3 581 304 D 1 HETATM 6 C C2 581 . . . Z 3 -45.701 -13.99 26.736 1 72.94 ? C2 581 304 D 1 HETATM 7 C C1 581 . . . Z 3 -46.719 -13.09 26.792 1 72.34 ? C1 581 304 D 1 HETATM 8 C C4 581 . . . Z 3 -45.283 -13.698 29.065 1 73.14 ? C4 581 304 D 1 HETATM 9 C C5 581 . . . Z 3 -46.305 -12.828 29.101 1 72.91 ? C5 581 304 D 1 HETATM 10 C C6 581 . . . Z 3 -47.024 -12.501 27.99 1 72.2 ? C6 581 304 D 1 HETATM 11 C C7 581 . . . Z 3 -46.565 -12.23 30.391 1 73.54 ? C7 581 304 D 1 HETATM 12 N N2 581 . . . Z 3 -47.771 -11.798 30.622 1 74.4 ? N2 581 304 D 1 HETATM 13 C C10 581 . . . Z 3 -48.061 -11.25 31.768 1 74.66 ? C10 581 304 D 1 HETATM 14 O O1 581 . . . Z 3 -49.2 -10.853 31.938 1 74.86 ? O1 581 304 D 1 HETATM 15 C C9 581 . . . Z 3 -47.029 -11.113 32.788 1 74.4 ? C9 581 304 D 1 HETATM 16 O O2 581 . . . Z 3 -47.287 -10.544 33.958 1 74.74 ? O2 581 304 D 1 HETATM 17 C C8 581 . . . Z 3 -45.702 -11.616 32.461 1 74.24 ? C8 581 304 D 1 HETATM 18 N N1 581 . . . Z 3 -45.562 -12.173 31.267 1 73.79 ? N1 581 304 D 1 HETATM 19 C C11 581 . . . Z 3 -44.533 -11.555 33.384 1 74.11 ? C11 581 304 D 1 HETATM 20 O O3 581 . . . Z 3 -44.418 -10.681 34.256 1 74.34 ? O3 581 304 D 1 HETATM 21 O O4 581 . . . Z 3 -43.673 -12.412 33.225 1 73.58 ? O4 581 304 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #